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- Table of Contents
Plan chromogenic IHC for CMTM8 in paraffin sections with the catalog antibody at 1:100–1:300 (datasheet). Compare liver hepatocytes or pancreatic exocrine cells with appendix glandular cells reported as undetected (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in several tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic in hepatocytes and pancreatic exocrine cells (HPA tissue IHC) | |
| Antigen retrieval | Tris-EDTA pH 9.0 HIER, 95–98 °C, 20 min (rule: nuclear antigen) | |
| Positive control | Epididymis+4 more · see all | |
| Negative control | Appendix+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Medium antibody–RNA consistency; verify staining (HPA tissue IHC) | |
| Regulation | Specific expression regulation not annotated (UniProt) | |
| Isoform / epitope | 2 isoforms; check extracellular versus cytoplasmic epitope (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet) appears alongside four published CMTM8 IHC methods (PMC9468640; PMC4722886; PMC9013447; PMC7859753).
| Sample | Paraffin-embedded Human Tonsils tissue; fixative not specified (datasheet A11789) |
| Fixation | Image fixative and duration unreported (datasheet A11789); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in Tris-EDTA buffer, pH 9.0, 20 min at 95–98 °C (standard rule: nuclear antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-CMTM8, 1:100-1:300 (datasheet A11789) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CMTM8-positive staining in glandular cells of epididymis (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in several tissues, including liver and pancreas. No signal in the no-primary control. |
In paraffin-section IHC, expect predominantly cytoplasmic CMTM8 staining in hepatocytes and pancreatic exocrine glandular cells, with medium staining reported in both (HPA: tissue IHC). This observed pattern can coexist with a four-pass membrane protein annotated in the membrane, cytoplasm and nucleus (UniProt Q8IZV2 topology and subcellular location). HPA rates its tissue IHC evidence Approved, with medium consistency against RNA data and external verification pending (HPA: tissue IHC reliability).
| Cytoplasmic staining in hepatocytes and pancreatic exocrine glandular cells. | This matches the reported IHC profile; HPA scores both cell populations Medium, so compare localisation and cell identity as well as intensity (HPA: tissue IHC). |
| Nuclear staining dominates the paraffin-section result, with little cytoplasmic staining. | Treat this as an IHC pattern requiring validation before calling it positive: HPA reports cytoplasmic tissue IHC, although UniProt includes nucleus and HPA ICC-IF reports nucleoplasm (HPA: tissue IHC and subcellular; UniProt Q8IZV2 subcellular location). |
| Strong staining appears mainly in cells HPA lists as not detected, such as appendix glandular cells. | This conflicts with that reference cell-type result and raises concern for cross-reactivity or detection background; a single discordant section does not establish either cause (HPA: tissue IHC; general IHC practice). |
| Chromogen is spread across tissue structures without a clear cellular pattern. | A diffuse deposit is difficult to score as CMTM8; assess background and endogenous detection activity with appropriate controls before interpreting localisation (general chromogenic IHC practice). |
| No staining is visible in hepatocytes or pancreatic exocrine glandular cells. | Recheck the assay before interpreting the specimen as negative: HPA reports Medium staining in these cells, but its tissue IHC evidence has only medium consistency with RNA data (HPA: tissue IHC and reliability). |
| Which compartment should guide IHC scoring? | Use the observed cytoplasmic tissue pattern as the reference (HPA: tissue IHC). Four transmembrane segments and membrane, cytoplasm and nucleus annotations broaden plausible biology but do not predict a membrane-only chromogenic pattern (UniProt Q8IZV2 topology and subcellular location). |
| Which tissue and cell type make a useful reference? | HPA reports Medium staining in liver hepatocytes, pancreatic exocrine glandular cells and lung macrophages; it reports appendix glandular cells as Not detected (HPA: tissue IHC). Score the specified cell population rather than whole-section colour (general IHC practice). |
| How secure is the tissue IHC pattern? | The tissue profile is Approved but has medium consistency with RNA expression and awaits external verification (HPA: tissue IHC reliability). HPA055077 is IHC Approved; the supplied record does not establish an IHC Enhanced result (HPA: antibody validation). |
| Does an isoform or processing event explain a different pattern? | UniProt lists two isoforms, no signal peptide or propeptide, and a chain spanning residues 1–173 (UniProt Q8IZV2). These annotations alone cannot assign an antibody epitope or explain a discordant staining compartment. |
| Q: What should an IF/ICC result show? | A: HPA reports approved nucleoplasmic localisation in ICC-IF images from HEK293 and Hep-G2, with HPA073258 ICC Supported (HPA: subcellular and antibody validation). Interpret that result within ICC-IF; it does not replace the cytoplasmic tissue IHC reference (HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| The expected liver or pancreas cells are unstained. | The section conflicts with HPA's Medium hepatocyte or pancreatic exocrine glandular-cell staining; the reason cannot be assigned from that comparison alone (HPA: tissue IHC). | Check the IHC-validated antibody's protocol, retrieval, dilution and detection steps against the actual run, then repeat alongside a reference section (general IHC practice). |
| Only nuclei stain in an IHC section. | This differs from HPA's cytoplasmic tissue IHC profile, although nuclear localisation is annotated by UniProt and nucleoplasmic ICC-IF is reported by HPA (HPA: tissue IHC and subcellular; UniProt Q8IZV2). | Review morphology and controls, then seek independent IHC confirmation before treating nuclear-only staining as the expected tissue pattern (general IHC practice). |
| Appendix glandular cells stain as strongly as the intended positive cells. | HPA lists appendix glandular cells as Not detected; cross-reactivity or detection background is possible but unproven (HPA: tissue IHC; general IHC practice). | Compare a no-primary control and cell-level localisation across sections; investigate persistent discordance with an independent validation approach (general IHC practice). |
| Diffuse chromogen obscures cell borders. | Nonspecific reagent binding or, with enzyme-based detection, endogenous activity can contribute to background (general chromogenic IHC practice). | Inspect a no-primary control and the assay's blocking, washing and endogenous-activity controls; adjust only steps relevant to the detection system used (general IHC practice). |
| Pancreas looks positive overall, but the stained cells are unclear. | A tissue-wide impression cannot establish the specified HPA result, which is Medium staining in exocrine glandular cells (HPA: tissue IHC). | Use morphology and counterstain to identify exocrine glandular cells, then record their compartment and intensity separately from neighbouring cells (general IHC practice). |
| ICC-IF shows nucleoplasmic signal while IHC shows cytoplasmic signal. | Those are the distinct reported assay observations, with separate HPA antibody validation entries (HPA: subcellular, tissue IHC and antibody validation). | Report each result with its assay and antibody context; assess any unexplained discrepancy within that assay's controls before combining interpretations (general IHC/ICC-IF practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Epididymis | Glandular cells | Medium | Protein (IHC) | HPA → |
| Liver | Hepatocytes | Medium | Protein (IHC) | HPA → |
| Lung | Macrophages | Medium | Protein (IHC) | HPA → |
| Pancreas | Exocrine glandular cells | Medium | Protein (IHC) | HPA → |
| Placenta | Decidual cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CMTM8 staining in paraffin sections by checking retrieval, cellular compartment, tissue context and controls before assigning a score.
A11789 has real IHC data from paraffin-embedded human tonsils (catalog image caption); IF is listed as an application without an IF image (catalog applications; catalog IF image alts). Human and mouse reactivity are listed (catalog reactivity).
A11789 will render with an IHC figure of paraffin-embedded human tonsils at 1:200 (catalog image caption). The rabbit polyclonal antibody lists IHC and IF applications and human and mouse reactivity; no IF figure is supplied (catalog host and dilution_raw; catalog applications and reactivity; catalog IF image alts).
Which to pick: For tissue IHC, choose A11789: its own image documents paraffin-embedded human tonsils at 1:200, while the fixative is unreported (catalog image caption). For IF/ICC, A11789 lists IF and an IF dilution of 1:50, but supplies no IF image or ICC validation (catalog applications; catalog IF dilution; catalog IF image alts). For human or mouse samples, A11789 is the listed rabbit polyclonal option with both species in its reactivity list; the pictured IHC sample is human (catalog host and dilution_raw; catalog reactivity; catalog image caption).