Cells for flow cytometry analysis are usually derived
from four main sources:
- Adherent or suspension cultures
- Cryopreserved samples
- Whole blood or buffy coats
- Solid tissues e.g. bone marrow, spleen, intestine etc.
Regardless of the source, the final cell
preparation should be:
a homogenous single-cell suspension free of clumps and dead cell debris at a density of
106-107 cell per ml suspended in a suitable staining buffer.
PBMCs isolated from
whole blood through Ficoll gradient centrifugation or RBC lysed whole
blood or non-adherent cultured cells are readily available for flow
cytometric analysis. Adherent cultured cells or cells present in the
solid organs should be first made into a single cell suspension before
flow analysis by using enzymatic digestion or mechanical dissociation of
the tissue, respectively. Mechanical filtration should be followed to
avoid unwanted instrument clogs or lower quality flow data. Use the
following sample preparation protocols based on your appropriate
starting materials.
Preparation Of Suspension Culture Cells
Key Reagents – PBS, staining buffer
- Decant cells from cell culture vessel into centrifuge tube(s).
- Centrifuge at 300-400 x g for 5-10 min at room temperature.
- Discard supernatant and re-suspend pellet in PBS and repeat previous step.
- Discard supernatant and re-suspend in suitable volume of cold staining buffer.
Preparation Of Adherent Culture Cells
Key Reagents – PBS, staining buffer, 0.25%
trypsin
- Discard culture medium and rinse the cell monolayer with sterile PBS
- Add warmed trypsin to just cover the monolayer and incubate at 37°C for 5-10 min
(depending on the cell type).
- Neutralize the reaction with culture medium (serum added) and detach the cells
by gently shaking the vessel.
- Continue as with suspension culture cells preparation protocol.
Preparation Of Cryopreserved Cells
Key reagents – PBS, staining buffer, culture
medium with 10% FBS
- Thaw the cryo-tubes rapidly in a water bath set at 37°C.
- Transfer to a chilled centrifuge tube and add ice cold culture medium drop by
drop until the cells are diluted 10X. Perform on ice!
- Centrifuge at 300-400 x g for 5 min at 4°C.
- Discard supernatant and wash once with cold staining buffer.
- Re-suspend cells in a suitable volume of cold staining buffer.
Preparation Of Cells From Blood Or Buffy Coat
Key reagents – PBS, staining buffers, suitable
gradients medium like Ficoll or Histopaque
- Dilute whole blood or buffy coat with equal volume of room temperature PBS.
- Carefully layer the diluted blood over an equal volume of the gradient medium.
- Centrifuge at 400-500 x g for 30-40 min at room temperature. The centrifuge
brakes should be turned off!
- Aspirate the PBMCs from the thin interface between the upper plasma layer and
lower medium layer.
- To remove granulocytes, aspirate the whitish colored layer just above the RBC
sediment [Note: specialized gradient media have been formulated to enrich for
different granulocyte populations].
- Re-suspend the cells in PBS and centrifuge at 300-400 x g for 10 min. at room
temperature.
- Wash with PBS once or twice more.
- Re-suspend the cells in a suitable volume of staining buffer.
Preparation Of Cells From Murine Bone Marrow
Key reagents – PBS, staining buffer (see
appendix), RBC lysis buffer [check Appendix for recipe or use a commercially
available buffer]
- Dissect out the tibia and femurs and remove all extraneous fat, muscle and
connective tissue. Put the bone in cold PBS and store on ice – perform all
following steps on ice.
- Fill up a syringe with cold culture medium and fit an 18 gauge needle to it.
Drill the ends of the bones with the needle and flush out the contents onto a
non-tissue culture treated plate.
- Break up the cell masses into a single cell suspension with the help of a
22-gauge needle.
- Pellet down the cells at 300-400 x g and wash once more with cold PBS.
- Re-suspend the cells in a suitable volume of staining buffer and perform a cell
count before pelleting the cells again.
- Re-suspend the cells in RBC lysis buffer at 106 cells/ml and incubate at room
temperature for 5 minutes.
- Pellet down the cells, discard the lysis buffer and wash once with PBS.
- Re-suspend the cells in a suitable volume of staining buffer.
