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Plan GIGYF2 chromogenic IHC in paraffin sections using the catalog antibody at 2–5 μg/ml (datasheet: A04303-2). Compare the granular cytoplasmic staining profile with high staining in testicular preleptotene spermatocytes and undetected staining in adipocytes (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Granular cytoplasm in several tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A04303-2) | |
| Positive control | Testis+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across paraffin sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A04303-2) | |
| Caveat | Staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Expression regulation is not annotated (UniProt) | |
| Isoform / epitope | 4 isoforms; epitope coverage is unknown (UniProt) |
The catalog antibody uses EDTA pH 8.0 heat retrieval (datasheet A04303-2). Published IHC protocols cover mouse hippocampus (PMC4182477) and transplanted tPVAT (PMC8698607).
| Sample | Paraffin-embedded human colorectal cancer tissue; fixative not specified (datasheet A04303-2) |
| Fixation | Image fixative and duration unreported (datasheet A04303-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A04303-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04303-2) |
| Primary antibody | Rabbit anti-GIGYF2, 2-5 μg/ml (datasheet A04303-2) |
| Primary incubation | Overnight at 4 °C (datasheet A04303-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A04303-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GIGYF2-positive staining in preleptotene spermatocytes of testis (HPA tissue IHC: High). HPA tissue profile: Granular cytoplasmic expression in several tissues. No signal in the no-primary control. |
GIGYF2 staining should appear mainly as granular cytoplasmic signal in paraffin sections (HPA: tissue IHC profile). Preleptotene spermatocytes in testis show high staining; several other cell types show medium staining (HPA: tissue IHC). Cytosolic localisation is also supported by ICC-IF (HPA: enhanced cytosol). GIGYF2 has no transmembrane segment (UniProt Q6Y7W6 topology). HPA rates the tissue IHC profile Approved but reports low consistency with RNA expression (HPA: tissue IHC reliability).
| Granular cytoplasmic staining is strong in testicular preleptotene spermatocytes (HPA: High in preleptotene spermatocytes). | This is the clearest supplied positive tissue pattern (HPA: tissue IHC). Medium staining in adrenal glandular cells, breast myoepithelial cells or cortical neurons can also fit the reported distribution (HPA: tissue IHC). Score the relevant cells and their compartment, rather than the section as a whole (general IHC practice). |
| Predominantly nuclear or membrane-rim staining replaces the expected cytoplasmic pattern (HPA: granular cytoplasmic tissue profile). | Treat a dominant signal in those compartments as suspect: HPA reports cytosolic ICC-IF localisation, while UniProt lists no transmembrane segment (HPA: enhanced cytosol; UniProt Q6Y7W6 topology). Check antibody specificity and compare with a negative detection control (general IHC practice). |
| Strong staining appears in adipocytes or lymph-node germinal center cells (HPA: Not detected in those cells). | That distribution conflicts with the supplied tissue observations (HPA: tissue IHC). Cross-reactivity or endogenous chromogenic detection activity is possible (general IHC practice). Assess staining in a matched control lacking primary antibody before assigning the signal to GIGYF2 (general IHC practice). |
| Color spreads across cells and extracellular areas, obscuring granular cytoplasmic detail (HPA: tissue IHC profile). | Diffuse background cannot establish the reported cell-specific pattern (HPA: granular cytoplasmic expression). Review blocking, washes, antibody concentration and chromogen development; each can affect background in chromogenic IHC (general IHC practice). Interpret only a signal that remains distinguishable from the negative detection control (general IHC practice). |
| No signal is visible in testicular preleptotene spermatocytes (HPA: High in these cells). | A missing expected positive makes a negative result elsewhere difficult to interpret (HPA: tissue IHC). Verify that the relevant cells are present, then review primary-antibody incubation, retrieval and detection controls (general IHC practice). HPA provides no target-specific fixation-sensitivity finding in this payload (HPA: supplied tissue IHC record). |
| Tissue and cell choice | Testicular preleptotene spermatocytes provide the strongest reported positive example; adrenal glandular cells and cortical neurons are reported at medium levels (HPA: tissue IHC). Adipocytes and lymph-node germinal center cells are reported as Not detected (HPA: tissue IHC). Compare named cell types, because staining levels differ within the supplied tissue profile (HPA: tissue IHC). |
| Subcellular expectation | HPA describes granular cytoplasmic tissue staining and enhanced cytosolic ICC-IF localisation (HPA: tissue IHC; HPA: subcellular ICC-IF). UniProt does not annotate a subcellular location, but records no transmembrane segment (UniProt Q6Y7W6). These observations support a cytoplasmic scoring expectation without establishing an exclusive compartment (HPA: supplied records; UniProt Q6Y7W6). |
| IHC evidence strength | The tissue profile is Approved, and HPA059918 and HPA065064 have Approved IHC status (HPA: tissue IHC; HPA: antibody validation). HPA also reports low consistency between antibody staining and RNA expression (HPA: reliability description). Treat the observed pattern as a useful reference while checking unexpected positives with controls (general IHC practice). |
| Isoforms and epitope coverage | UniProt lists 4 GIGYF2 isoforms and a GYF domain at residues 533–581 (UniProt Q6Y7W6). The supplied record gives no epitope position for the IHC antibodies (HPA: supplied antibody records). It therefore cannot establish whether all isoforms would stain equally; record the antibody used when comparing results (general IHC practice). |
| Retrieval and detection | No GIGYF2-specific retrieval condition or fixation effect is established by the supplied HPA and UniProt records (HPA: supplied records; UniProt Q6Y7W6). If signal is weak, evaluate retrieval and chromogenic detection against the expected positive cells and a negative detection control (general IHC practice); do not infer a target-specific fixation effect from that adjustment. |
| IF/ICC question: what localisation should be expected? | Cytosolic signal is the reported ICC-IF result, with enhanced localisation evidence (HPA: subcellular ICC-IF). HPA050899 and HPA054612 have Enhanced ICC status, whereas the listed IHC antibodies have Approved IHC status (HPA: antibody validation). Use that IF observation to interpret compartment, without treating the two application validations as interchangeable (HPA: antibody validation). |
| Situation | Likely cause | Next action |
|---|---|---|
| Testis section lacks staining in preleptotene spermatocytes (HPA: High in these cells). | The expected cells may be absent from the section, or an IHC processing or detection step may have failed (general IHC practice). | Confirm cell identity and tissue quality; check primary-antibody exposure, retrieval, secondary detection and chromogen development with controls (general IHC practice). Avoid scoring other tissues as negative until an expected positive is demonstrated (general IHC practice). |
| Nuclear staining dominates the slide (HPA: cytoplasmic tissue profile). | The compartment conflicts with HPA's granular cytoplasmic tissue pattern and enhanced cytosolic ICC-IF result (HPA: tissue IHC; HPA: subcellular ICC-IF). Nonspecific signal is possible (general IHC practice). | Compare with the negative detection control and inspect whether cytoplasmic granules remain distinguishable (general IHC practice). Reassess antibody specificity before reporting nuclear GIGYF2 localisation (general IHC practice). |
| Adipocytes stain strongly (HPA: adipocytes Not detected). | The result differs from HPA's observed cell pattern; cross-reactivity or endogenous chromogenic activity may contribute (HPA: tissue IHC; general IHC practice). | Compare the same tissue with a control lacking primary antibody, and evaluate the signal's cellular location (general IHC practice). Report the discrepancy with the HPA observation if staining persists (HPA: adipocytes Not detected). |
| Background masks cell boundaries and cytoplasmic granules (HPA: granular cytoplasmic tissue profile). | Insufficient blocking or washing, excessive reagent concentration, or extended chromogen development can raise background (general IHC practice). | Review blocking and washes, then adjust reagent concentration or development time using a positive tissue and negative detection control (general IHC practice). Score staining only after cell-specific signal can be separated from background (general IHC practice). |
| A medium-staining tissue looks weak compared with testis (HPA: medium examples; High in testicular preleptotene spermatocytes). | The difference may reflect the reported tissue pattern rather than assay failure (HPA: tissue IHC). HPA also reports low consistency with RNA expression (HPA: reliability description). | Compare the correct cell types and compartment, and confirm assay performance in testicular preleptotene spermatocytes when available (HPA: tissue IHC; general IHC practice). Do not require every tissue to match testis intensity (HPA: tissue IHC). |
| IF/ICC appears cytosolic, but the paraffin IHC result is unclear (HPA: enhanced cytosolic ICC-IF). | The supplied HPA records validate different antibodies for ICC and IHC, and the tissue IHC profile has low consistency with RNA expression (HPA: antibody validation; HPA: tissue IHC reliability). | Evaluate the paraffin section using its own positive cells, compartment pattern and detection controls (HPA: tissue IHC; general IHC practice). Treat the ICC-IF finding as localisation context rather than proof that the IHC signal is specific (HPA: antibody validation). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Preleptotene spermatocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Breast | Myoepithelial cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Follicle cells | Not detected | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot GIGYF2 chromogenic IHC by checking retrieval, cytoplasmic localisation, cell identity, and controls before interpreting staining intensity.
A04303-2 has IHC images from human paraffin sections and an IF/ICC image from SiHa cells (catalog image captions); its listed reactivity is human (catalog: reactivity).
A04303-2 is the only SKU and is listed for human IHC and IF/ICC (catalog: applications and reactivity). Its images show IHC in paraffin sections of human colorectal cancer and gall bladder adenosquamous carcinoma, plus IF/ICC in SiHa cells (catalog image captions).
Which to pick: Choose A04303-2 for human paraffin-section IHC: its colorectal cancer image used EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody; the fixative is unreported (A04303-2 IHC image caption). Choose the same SKU for IF/ICC in human cells, supported by its SiHa-cell image and listed 5 μg/ml IF dilution; clonality is unreported (A04303-2 IF image caption; catalog: dilution and clone). No cross-species option is supported by this payload (catalog: human reactivity only).