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- Table of Contents
Plan paraffin-section chromogenic HSD17B7 IHC using the catalog antibody’s documented assay (datasheet A05850-1). Interpret cytoplasmic tissue staining (HPA tissue IHC) alongside the ER membrane location (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining (HPA tissue IHC); ER membrane location (UniProt) | |
| Staining pattern | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A05850-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+2 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); assess its effect empirically. | |
| Caveat | Antibody staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Liver-enhanced RNA expression (HPA tissue RNA) | |
| Isoform / epitope | 3 isoforms; check extracellular vs cytoplasmic epitope (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A05850-1) with published HSD17B7 staining of mouse ovarian sections (PMC11121541; PMC5934784) and human prostate tissue (PMC13266810).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A05850-1) |
| Fixation | Image fixative and duration unreported (datasheet A05850-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A05850-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A05850-1) |
| Primary antibody | Rabbit anti-HSD17B7, 2-5 μg/ml (datasheet A05850-1) |
| Primary incubation | Overnight at 4 °C (datasheet A05850-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A05850-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HSD17B7-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
HSD17B7 is an endoplasmic reticulum membrane protein, so the expected IHC signal is cytoplasmic rather than nuclear (UniProt P56937 topology). HPA reports cytoplasmic expression in most tissues and high staining in selected glandular cells, bronchial ciliated cell bodies, pancreatic exocrine cells and melanocytes (HPA tissue IHC). Interpret these patterns with care: HPA rates the tissue staining Approved but reports low consistency between antibody staining and RNA expression (HPA tissue IHC reliability).
| Cytoplasmic staining in adrenal, colonic, duodenal, gallbladder or small-intestinal glandular cells, or pancreatic exocrine cells (HPA tissue IHC). | This matches the reported high-staining cell populations (HPA: High in these cells) and is compatible with endoplasmic reticulum membrane localisation (UniProt P56937). Judge signal within the identified cells; a positive section alone does not show that every cell in it should stain. |
| Predominantly nuclear staining with little cytoplasmic signal in an expected positive cell population. | A nuclear-only pattern conflicts with the reported cytoplasmic tissue pattern (HPA tissue IHC) and endoplasmic reticulum membrane assignment (UniProt P56937). Treat it as suspect until the staining controls and tissue morphology have been checked; compartment alone cannot identify the source of an artefact. |
| Strong staining in adipocytes, parathyroid glandular cells or splenic red-pulp cells (HPA: Not detected in these cells). | These cell populations are HPA-reported negatives, so strong signal warrants review for cross-reactivity or endogenous chromogenic detection activity (HPA tissue IHC; general IHC practice). Compare with a no-primary control and a positive tissue on the same run before assigning it to HSD17B7. |
| Colour spread across stroma, lumens or many cell types without a distinct cytoplasmic pattern. | Treat a diffuse field as background when cell boundaries and the expected positive populations cannot be distinguished (HPA tissue IHC; general IHC practice). Examine the no-primary control and review blocking, washing and detection conditions; a dark field by itself cannot establish HSD17B7 localisation. |
| No cytoplasmic signal in an expected high-staining population, with intact tissue morphology (HPA: High in selected cells). | First check whether the run can detect its positive control, then review antibody use and the general IHC workflow. Absence in one section is inconclusive: HPA calls the tissue pattern Approved while noting low staining–RNA consistency, so avoid treating one negative result as proof of absent protein (HPA tissue IHC reliability). |
| Cell population and tissue | HPA reports High staining in adrenal, colonic, duodenal, gallbladder and small-intestinal glandular cells; bronchial ciliated cell bodies, pancreatic exocrine cells and skin melanocytes are also High (HPA tissue IHC). Lung alveolar and prostate glandular cells are Low, while adipocytes are Not detected (HPA tissue IHC). Choose and score the named cells rather than using whole-section colour as the criterion. |
| Subcellular assignment | UniProt places HSD17B7 at the endoplasmic reticulum membrane with one annotated transmembrane segment at residues 230–250 (UniProt P56937 topology). HPA describes cytoplasmic tissue staining (HPA tissue IHC). These records support a cytoplasmic expectation but do not establish which side of the membrane the catalog antibody recognises; its epitope is unspecified here. |
| Evidence and antibody scope | HPA lists the supplied antibody, HPA047496, as IHC Approved, and reports low consistency between antibody staining and RNA expression for the tissue profile (HPA antibody validation; HPA tissue IHC reliability). Use the observed cell pattern as a reference with that limitation; do not treat Approved as evidence that every positive cell or signal intensity is independently confirmed. |
| IF/ICC: what localisation can this section predict? | Expect a membrane-associated intracellular pattern from the endoplasmic reticulum assignment (UniProt P56937); HPA's subcellular summary says Membrane but supplies no main-location assignment or ICC-IF image cell lines (HPA subcellular). This supports only a cautious localisation expectation for IF/ICC, not a demonstrated fluorescent pattern or an IF protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected positive glandular cells are blank while the section looks intact (HPA: High in selected glandular cells). | Target-specific fixation effects are not established by the supplied assay evidence. Verify with a matched IHC source before attributing a result to fixation. | Check a positive control from an HPA-reported High cell population and the run's detection controls; then review the antibody's IHC instructions and routine processing records before interpreting the blank section. |
| An expected positive population has only weak colour (HPA: High in selected cells). | Weak staining can make a cell-level pattern hard to judge (general IHC practice); HPA's staining–RNA consistency is low, so expression data alone cannot settle the result (HPA tissue IHC reliability). | Compare like cell populations in the positive control and test section. Verify routine chromogenic detection and counterstain conditions, then report the observed intensity rather than upgrading it to High from the reference. |
| Adipocytes or parathyroid glandular cells appear strongly positive (HPA: Not detected in these cells). | Cross-reactivity or endogenous detection activity is possible (general IHC practice); the observation conflicts with these HPA tissue results (HPA tissue IHC). | Inspect a no-primary control, confirm cell identity from morphology and compare the same run with an HPA-reported High population. Flag persistent unexpected staining as unresolved rather than assigning target expression. |
| Signal is predominantly nuclear in cells expected to stain cytoplasm. | That compartment disagrees with HPA's cytoplasmic tissue profile and UniProt's endoplasmic reticulum membrane assignment (HPA tissue IHC; UniProt P56937). | Check morphology, the no-primary control and staining across the expected positive cells. Record the discordance if the nuclear pattern persists; these sources do not establish a nuclear HSD17B7 pattern. |
| The whole section is hazy or chromogen obscures cell boundaries. | Diffuse background or excessive detection can hide the cell-specific cytoplasmic pattern (general IHC practice; HPA tissue IHC). | Review the no-primary control, blocking, washing and detection conditions using routine IHC practice. Reassess only when the named cell populations and cytoplasmic signal can be distinguished. |
| A low-staining lung alveolar or prostate glandular population seems as strong as an expected high-staining control (HPA tissue IHC). | The observed relative intensity differs from HPA's Low versus High categories; staining conditions or specimen variation could contribute (HPA tissue IHC; general IHC practice). | Score the named cells separately under comparable detection and counterstain conditions, and document the discrepancy. Do not infer a new HSD17B7 tissue ranking from a single section, given HPA's low staining–RNA consistency (HPA tissue IHC reliability). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Ciliated cells (cell body) | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
Troubleshoot HSD17B7 chromogenic IHC in paraffin sections using the tested retrieval and staining conditions, while checking whether signal fits its ER membrane localisation.
A05850-1 has IHC data from human paraffin sections of liver, prostate, and colorectal cancers (catalog IHC captions), plus IF data from HepG2 cells (catalog IF caption). Rat reactivity is listed (catalog: reactivity).
A05850-1 is shown in IHC on human paraffin sections of liver cancer, prostate cancer, and colorectal adenocarcinoma (catalog IHC captions). It is also shown in IF/ICC on HepG2 cells (catalog IF caption), and its listed reactivity is Human and Rat (catalog: reactivity).
Which to pick: Choose A05850-1 for chromogenic IHC on human paraffin sections: its own IHC captions show EDTA pH 8.0 retrieval and 2 μg/ml primary antibody (catalog IHC captions). The same SKU is listed for IF/ICC at 5 μg/ml and shown on HepG2 cells (catalog: applications, IF dilution, IF caption). A05850-1 lists Rat reactivity, but the supplied IHC and IF images show human samples only (catalog: reactivity, IHC captions, IF caption); the IHC captions do not report the fixative (catalog IHC captions).