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- Table of Contents
Plan PSMD8 paraffin IHC using the catalog antibody’s documented protocol (datasheet A12465-1). Compare staining with the mainly cytoplasmic tissue profile and score Purkinje cell nuclear signal separately (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Mainly cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Mostly cytoplasmic; Purkinje cell nuclei stain strongly (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A12465-1) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | Bone marrow+2 more · see all |
| Fixation | Keep fixation consistent across samples (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A12465-1) | |
| Caveat | Purkinje cell nuclei may stain despite the cytoplasmic trend (HPA tissue IHC) | |
| Regulation | Expression regulation is unreported (UniProt) | |
| Isoform / epitope | No annotated isoforms; one chain spans residues 1–350 (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A12465-1) is accompanied by published PSMD8 protocols for ovarian and bladder cancer tissue (PMC10286491; PMC12704262).
| Sample | Paraffin-embedded mouse brain tissue; fixative not specified (datasheet A12465-1) |
| Fixation | Image fixative and duration unreported (datasheet A12465-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A12465-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A12465-1) |
| Primary antibody | Rabbit anti-PSMD8, 2-5 μg/ml (datasheet A12465-1) |
| Primary incubation | Overnight at 4 °C (datasheet A12465-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A12465-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | PSMD8-positive staining in purkinje cells - nucleus of cerebellum (HPA tissue IHC: High). HPA tissue profile: Mainly cytoplasmic expression in most tissues. No signal in the no-primary control. |
Expect mainly cytoplasmic PSMD8 staining across most tissues, with intensity varying by cell type (HPA tissue IHC: Supported; medium consistency with RNA). Cerebral cortex neuronal cells stain strongly, while cerebellar Purkinje cells show high nuclear staining (HPA tissue IHC). PSMD8 has no annotated transmembrane segment (UniProt P48556 topology), so a membrane-restricted pattern is unexpected. ICC-IF places PSMD8 mainly in the cytosol, with additional nuclear speckles (HPA subcellular: approved).
| Cytoplasmic staining in many cells, with stronger neuronal staining in cerebral cortex and nuclear staining in Purkinje cells. | This fits the reported IHC pattern: mainly cytoplasmic expression in most tissues, high staining in cortical neuronal cells, and high nuclear staining in cerebellar Purkinje cells (HPA tissue IHC). Judge the compartment in its tissue context; nuclear Purkinje staining is an observed exception to the broad cytoplasmic profile. |
| A sharp plasma-membrane outline dominates the stain, with little cytoplasmic signal. | Treat a membrane-restricted result as suspect because PSMD8 has no annotated transmembrane segment (UniProt P48556 topology), and HPA reports mainly cytoplasmic tissue staining (HPA tissue IHC). Review morphology, controls, and detection conditions before interpreting the outline as PSMD8. |
| Strong staining appears in bone-marrow hematopoietic cells or oral or vaginal squamous epithelium. | HPA lists these cell populations as not detected in its tissue IHC record (HPA tissue IHC). Investigate cross-reactivity or endogenous chromogen-generating activity (general IHC practice). An HPA negative observation is a comparison point, not proof that every specimen must be negative. |
| Color coats the section broadly, including tissue spaces or many unrelated structures. | Diffuse background does not resolve the cell and compartment differences reported for PSMD8 (HPA tissue IHC). Check a no-primary control, blocking, washes, and detection reagent conditions to distinguish nonspecific staining from cellular signal (general IHC practice). |
| No staining is visible in cerebral cortex neuronal cells or cerebellar Purkinje cells. | These are useful positive comparisons because HPA reports high staining in cortical neuronal cells and Purkinje-cell nuclei (HPA tissue IHC). Confirm tissue integrity and a working detection control, then review retrieval and antibody conditions (general IHC practice); absence alone cannot identify the failed step. |
| Strength of tissue evidence | HPA rates the IHC pattern Supported and describes medium consistency between antibody staining and RNA data (HPA tissue IHC). Use the listed cells as reference patterns while allowing for specimen and assay differences (general IHC practice). |
| Cell-type variation | HPA reports medium staining in adipocytes and several glandular or epithelial populations, low staining in selected glial and glandular cells, and not detected staining in listed marrow and squamous cells (HPA tissue IHC). Score identified cell populations separately. |
| Compartment and protein context | PSMD8 is a component of the 19S proteasome regulatory-particle lid and lacks an annotated transmembrane segment (UniProt P48556). HPA's tissue profile is mainly cytoplasmic, while ICC-IF also resolves nuclear speckles (HPA tissue IHC; HPA subcellular). |
| RNA versus stain | Skeletal muscle is tissue-enhanced at the RNA level (HPA tissue IHC: RNA specificity). That label does not specify an IHC intensity or establish a positive control in skeletal muscle; select an observed protein-staining example when assessing the slide (HPA tissue IHC). |
| Antibody evidence | HPA lists two antibodies with IHC status Supported; one also has ICC status Approved (HPA antibodies: HPA006702, CAB021101). These statuses support their reported applications but do not validate an unlisted antibody or a particular laboratory's conditions. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive neuronal tissue has no visible signal. | The assay may have failed at detection, retrieval, or antibody incubation (general IHC practice); HPA reports high staining in cortical neuronal cells (HPA tissue IHC). | Check a working detection control and section quality, then review the antibody's IHC-P instructions for retrieval and incubation conditions (general IHC practice). |
| The whole section has diffuse brown background. | Nonspecific binding, incomplete washing, or endogenous detection activity can obscure cell boundaries (general IHC practice). | Compare a no-primary control; review blocking, washes, and the detection system's endogenous-activity controls (general IHC practice). Reassess whether a cellular pattern remains (HPA tissue IHC). |
| Signal is confined to cell membranes. | That compartment conflicts with PSMD8's lack of an annotated transmembrane segment and HPA's mainly cytoplasmic IHC profile (UniProt P48556 topology; HPA tissue IHC). | Inspect a positive reference and no-primary control, then review primary-antibody and detection conditions before assigning the rim to PSMD8 (general IHC practice). |
| Bone-marrow hematopoietic cells stain strongly. | HPA reports these cells as not detected; cross-reactivity or endogenous detection activity is possible (HPA tissue IHC; general IHC practice). | Run a no-primary control and compare cell-specific staining with a known-positive tissue; interpret persistent signal cautiously (general IHC practice; HPA tissue IHC). |
| Every nuclear signal is being scored as an artifact. | The rule is too broad: HPA reports high nuclear staining in Purkinje cells and additional nuclear-speckle localization by ICC-IF (HPA tissue IHC; HPA subcellular). | Score nuclei by identified cell type and staining pattern; investigate unexpected nuclear staining elsewhere against controls and the mainly cytoplasmic tissue profile (HPA tissue IHC; general IHC practice). |
| Q: Must an IF/ICC image reproduce the chromogenic IHC pattern exactly? | The assays report related but different observations: HPA describes mainly cytoplasmic tissue IHC and cytosol plus nuclear speckles in ICC-IF (HPA tissue IHC; HPA subcellular). | A: Use the ICC-IF localization as context for compartment interpretation, and judge the paraffin-section result against tissue IHC cell types and controls (HPA tissue IHC; HPA subcellular; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Purkinje cells - nucleus | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
Troubleshoot PSMD8 staining in paraffin sections by checking retrieval, compartment, controls, and scoring before interpreting differences between samples.
A12465-1 has paraffin-section IHC images from mouse and rat brain and human breast cancer, plus IF/ICC data in A549 cells (catalog image captions).
A12465-1 is listed for IHC and IF/ICC, with human, mouse and rat reactivity (catalog: applications/reactivity). Its IHC captions show paraffin sections of mouse and rat brain and human breast cancer; its IF caption shows A549 cells (catalog image captions).
Which to pick: Choose A12465-1 for paraffin-section tissue IHC: its captions show EDTA pH 8.0 retrieval and 2 μg/ml primary antibody in mouse brain, rat brain and human breast cancer sections; the fixative is unreported (catalog IHC captions). For IF/ICC, A12465-1 has an A549-cell example at 5 μg/ml (catalog IF caption). It is the listed cross-species choice for tissue IHC because those captions cover human, mouse and rat; the antibody is rabbit-hosted, and clonality is unreported (catalog IHC captions; catalog: host/clone).