This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan chromogenic ACVR1C IHC in paraffin sections using the observed cytoplasmic tissue pattern and the receptor’s membrane topology (HPA tissue IHC; UniProt). Interpret staining cautiously because tissue IHC reliability is uncertain and presumed off-target binding has been observed (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining observed (HPA tissue IHC); membrane expected (UniProt) | |
| Staining pattern | General cytoplasmic staining across several tissue types (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6.0 HIER, 95–98 °C, 20 min (rule: cytoplasmic / membrane antigen) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A30526) | |
| Caveat | Presumed off-target staining; tissue IHC reliability uncertain (HPA tissue IHC) | |
| Regulation | Expression varies by tissue (HPA tissue IHC) | |
| Isoform / epitope | 4 isoforms; check whether the epitope is extracellular or cytoplasmic (UniProt) |
Compare the catalog antibody’s IHC-P protocol with one published ACVR1C IHC method in colorectal cancer tissue (PMC13371181).
| Sample | Paraffin-embedded human brain tissue; fixative not specified (datasheet A30526) |
| Fixation | Image fixative and duration unreported (datasheet A30526); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in citrate buffer, pH 6.0, 20 min at 95–98 °C (standard rule: cytoplasmic / membrane antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-ACVR1C, 1:100 - 1:300 (datasheet A30526) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ACVR1C-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression in several different tissue types. No signal in the no-primary control. |
ACVR1C is a single-pass membrane receptor with an extracellular region at residues 22–113 and a cytoplasmic region at 135–493 (UniProt Q8NER5 topology). In paraffin IHC, examine the HPA-reported glandular cells, neurons, glomerular cells and lung macrophages; HPA reports generally cytoplasmic staining, but rates its tissue IHC evidence Uncertain because staining and RNA data have low consistency and presumed off-target binding was observed (HPA: tissue IHC).
| Membrane-associated staining in the expected cells, with possible cytoplasmic signal. | Membrane association fits receptor topology (UniProt Q8NER5 topology). HPA describes general cytoplasmic staining but rates its IHC evidence Uncertain; confirm the pattern with controls before assigning either compartment specifically to ACVR1C (HPA: tissue IHC). |
| Predominantly nuclear staining, especially without a corresponding membrane-associated pattern. | A nuclear-only pattern conflicts with the reported membrane location (UniProt Q8NER5 subcellular location; HPA: subcellular summary). Review morphology, background and controls before calling it positive. |
| Strong staining in cells outside the HPA-reported populations. | Consider cross-reactivity or endogenous chromogenic activity. HPA observed presumed off-target binding, and its antibody IHC assessments are Uncertain (HPA: tissue IHC; HPA: HPA007982 and HPA011933 IHC). Cell identity alone cannot prove specificity. |
| Diffuse staining across tissue, including areas without a clear cellular pattern. | This is difficult to score as receptor localisation; assess blocking, wash conditions and no-primary control as general IHC practice. HPA's uncertain tissue pattern gives no basis for treating uniform background as ACVR1C signal (HPA: tissue IHC). |
| No staining in a tissue with an HPA High cell population. | First check whether that population is present and assess assay controls. HPA High is an observation, not a guaranteed positive for every antibody or section; HPA also reports low antibody-to-RNA consistency (HPA: tissue IHC). |
| Topology and compartment | ACVR1C has one transmembrane segment at residues 114–134 (UniProt Q8NER5 topology). Membrane association is biologically plausible; the HPA cytoplasmic IHC profile needs independent confirmation because its reliability is Uncertain (HPA: tissue IHC). |
| Cell population used for comparison | HPA reports High staining in adrenal, breast, colon, duodenal and fallopian tube glandular cells; cerebral cortical neurons, glomerular cells and lung macrophages are also High (HPA: tissue IHC). Its Low examples are comparison points, not proven negatives (HPA: tissue IHC). |
| Antibody validation | Both listed rabbit polyclonal antibodies, HPA007982 and HPA011933, have Uncertain IHC assessments (HPA: antibodies). HPA reports presumed off-target binding; a plausible cell pattern therefore still needs appropriate specificity controls (HPA: tissue IHC). |
| Isoforms and epitope interpretation | UniProt lists four ACVR1C isoforms and a signal peptide at residues 1–20, with the mature chain beginning at residue 21 (UniProt Q8NER5). The supplied record gives no antibody epitope, so isoform recognition or staining of the cleaved signal peptide cannot be inferred. |
| IF/ICC expectation? | The separate IF/ICC guide should treat membrane staining as the location hypothesis (UniProt Q8NER5 subcellular location; HPA: subcellular summary). HPA supplies no ICC-IF image-bearing cell line or main-location assignment here, so an IF staining pattern is unconfirmed (HPA: subcellular). |
| Situation | Likely cause | Next action |
|---|---|---|
| Only nuclei stain. | The compartment conflicts with ACVR1C's reported membrane location (UniProt Q8NER5; HPA: subcellular summary). | Compare no-primary and counterstain controls; recheck cellular boundaries and scoring before accepting a positive call (general IHC practice). |
| Colour appears in many unexpected cell types. | Cross-reactivity is plausible because HPA reports presumed off-target binding; endogenous chromogenic activity can also contribute (HPA: tissue IHC; general IHC practice). | Use a no-primary control and an appropriate endogenous-enzyme block, then compare staining with the reported cell populations (general IHC practice; HPA: tissue IHC). |
| Background obscures cell boundaries. | Nonspecific reagent binding or incomplete washing can produce diffuse chromogen (general IHC practice). | Review blocking, wash steps and detection-control slides; score only staining whose cellular distribution remains interpretable (general IHC practice). |
| An HPA High tissue gives no interpretable signal. | The expected cell population may be absent from the section, or the assay may have failed; HPA High does not ensure this antibody will stain (HPA: tissue IHC). | Verify the relevant cells on the counterstain and check assay controls; review the antibody's IHC-P conditions and retrieval workflow (general IHC practice). |
| Cytoplasmic staining dominates with little membrane detail. | HPA reports general cytoplasmic IHC staining despite the membrane annotation, and calls the tissue result Uncertain (HPA: tissue IHC; HPA: subcellular summary). | Record the distribution as observed, compare controls and seek independent specificity evidence before calling the cytoplasmic signal ACVR1C (general IHC practice; HPA: tissue IHC). |
| Different sections show inconsistent positive cells. | HPA reports low consistency between antibody staining and RNA expression and rates both listed antibodies Uncertain for IHC (HPA: tissue IHC; HPA: antibodies). | Check that the same cell populations are present, keep scoring criteria consistent and qualify conclusions that rely on a single staining pattern (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: ACVR1C is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot ACVR1C staining in paraffin sections by checking retrieval, compartment, cell identity and controls before comparing staining intensity.
A30526 is listed for IHC and IF (catalog applications), with IHC data from paraffin-embedded human brain tissue (IHC image caption) and IF data from COS7 cells (IF image caption).
A30526 has an IHC image of paraffin-embedded human brain tissue (IHC image caption). The same SKU has an IF image of COS7 cells (IF image caption) and lists human, mouse and rat reactivity (catalog reactivity).
Which to pick: For tissue IHC, choose A30526: its IHC image shows paraffin-embedded human brain tissue (IHC image caption), and its listed IHC dilution is 1:100–1:300 (datasheet). For IF/ICC, A30526 lists both applications (catalog applications), has IF data from COS7 cells (IF image caption), and lists an ICC/IF dilution of 1:200–1:1000 (datasheet). For cross-species work, A30526 is a rabbit polyclonal listed as reactive with human, mouse and rat (catalog host, clonality and reactivity); its IHC caption supports paraffin sections, but does not report the fixative (IHC image caption).