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- Table of Contents
Plan AOC1 staining in paraffin sections using colon glandular cells or kidney tubules as positive controls (HPA tissue IHC). Compare cytoplasmic and membranous staining with the tissue context, and start the catalog antibody at 2–5 μg/ml (HPA tissue IHC; datasheet: 2–5 μg/ml).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous (HPA tissue IHC) | |
| Staining pattern | Most cell types show cytoplasmic and membranous staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB10040) | |
| Positive control | Colon+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Secretion can separate protein staining from local RNA expression (HPA tissue IHC) | |
| Regulation | No expression regulator specified (UniProt) | |
| Isoform / epitope | 2 isoforms; residues 1–19 are cleaved, so epitope site matters (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: PB10040) is accompanied by published AOC1 chromogenic protocols for colorectal cancer tissue and mouse placenta (PMC8131869; PMC13438134).
| Sample | Paraffin-embedded human colonic adenoma tissue; fixative not specified (datasheet PB10040) |
| Fixation | Image fixative and duration unreported (datasheet PB10040); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB10040); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB10040) |
| Primary antibody | Rabbit anti-AOC1, 2-5 μg/ml (datasheet PB10040) |
| Primary incubation | Overnight at 4 °C (datasheet PB10040) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet PB10040) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | AOC1-positive staining in glandular cells of colon (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and membranous expression in most cell types. No signal in the no-primary control. |
AOC1 is reported in the extracellular space and at the cell membrane, with no transmembrane segment (UniProt P19801: location, topology). Tissue IHC shows cytoplasmic and membranous staining in most cell types, with high staining in colon glandular cells and kidney tubule cells (HPA: tissue IHC). HPA rates the tissue pattern Approved but notes low consistency with RNA expression, as secreted protein can be found away from its site of synthesis (HPA: reliability).
| Colon glands or kidney tubules show clear cytoplasmic and membranous chromogen above surrounding tissue (HPA: High in colon glandular cells and kidney tubule cells). | This matches the strongest listed tissue IHC examples (HPA: tissue IHC). Score the cells and compartments that stain; secretion can complicate assignment of protein signal to its producing cell (UniProt P19801: secreted; HPA: reliability). |
| Signal is exclusively nuclear in otherwise intact cells. | An exclusively nuclear pattern conflicts with the reported cytoplasmic and membranous tissue pattern and extracellular or membrane annotation (HPA: tissue IHC; UniProt P19801: location). Check whether the nuclear color persists in a no-primary control before interpreting it as AOC1 (general IHC practice). |
| Strong chromogen appears in cells listed as not detected, such as adipocytes in adipose tissue (HPA: tissue IHC). | Treat this as discordant with the listed HPA example, rather than proof of expression. Cross-reactivity or endogenous detection activity is possible; compare a no-primary control and the expected colon or kidney pattern (general IHC practice; HPA: tissue IHC). |
| Color spreads across the section without a discernible cell or compartment pattern. | Diffuse background cannot establish the reported cytoplasmic and membranous pattern (HPA: tissue IHC). Check the no-primary control and compare tissue edges, folds and intact cells before scoring specific staining (general IHC practice). |
| Neither colon glandular cells nor kidney tubule cells stain (HPA: High in both cell populations). | A blank known-positive example raises an assay-performance question; it does not establish that AOC1 is absent. Confirm tissue identity, positive-control performance and the detection steps before interpreting the test section (HPA: tissue IHC; general IHC practice). |
| Protein location and secretion (UniProt P19801: location, topology). | AOC1 is annotated as secreted and cell-membrane associated, without a transmembrane segment (UniProt P19801). Interpret extracellular color cautiously alongside the observed cellular pattern (HPA: tissue IHC, reliability). |
| Choice of tissue comparator (HPA: tissue IHC). | Colon glandular cells and kidney tubule cells are High; placental trophoblastic cells are Medium, while adipose-tissue adipocytes are Not detected (HPA: tissue IHC). Match the cell type when comparing slides. |
| Strength of pattern evidence (HPA: antibody validation, reliability). | HPA lists two antibodies, HPA031032 and HPA031033, as IHC Approved; the supplied record does not label either IHC Enhanced (HPA: antibodies). HPA also reports low staining–RNA consistency for this secreted protein (HPA: reliability). |
| Processing and molecular variation (UniProt P19801: processing, isoforms, glycosylation). | The record lists a signal peptide at residues 1–19, a mature chain at 20–751, two isoforms and four glycosylation sites (UniProt P19801). It supplies no epitope map or target-specific retrieval or fixation effect; avoid predicting how those features alter staining. |
| IF/ICC: what pattern is established? (HPA: subcellular ICC-IF). | HPA summarizes AOC1 as secreted but provides no main ICC-IF location or cell-line images (HPA: subcellular ICC-IF). Use the tissue IHC observations as context, without treating them as an IF/ICC validation. |
| Situation | Likely cause | Next action |
|---|---|---|
| The positive tissue is blank. | The stain may have failed, or the sampled section may lack the expected glandular or tubular cells (general IHC practice; HPA: tissue IHC). | Confirm the cell type on the counterstain, then review the antibody, retrieval and detection run with a known-positive section (general IHC practice; HPA: High in colon glands and kidney tubules). |
| All tissue compartments look brown. | Background from detection or insufficient blocking may obscure a cellular pattern (general IHC practice). | Compare a no-primary control; review blocking, washes and detection conditions, then score only distinguishable cells (general IHC practice). |
| The no-primary control is also colored. | For an HRP-based chromogenic assay, endogenous peroxidase or detection-system background may contribute (general IHC practice). | Review the peroxidase-blocking and detection steps, and repeat the control beside the test section (general IHC practice). |
| Signal is confined to nuclei. | The compartment disagrees with the reported cytoplasmic and membranous tissue pattern (HPA: tissue IHC). | Check counterstain and no-primary control, then compare the same tissue with a validated positive section before assigning AOC1 (general IHC practice; HPA: tissue IHC). |
| An unexpected cell population stains strongly. | Cross-reactivity or endogenous activity is possible when staining conflicts with an HPA Not detected example (general IHC practice; HPA: tissue IHC). | Compare cell-matched HPA examples and controls; report the discordance rather than scoring it as established AOC1 expression (HPA: tissue IHC; general IHC practice). |
| Protein staining does not track local RNA expression. | Secreted AOC1 may be detected away from the cells producing it; HPA explicitly reports low staining–RNA consistency (UniProt P19801: secreted; HPA: reliability). | Describe the stained cells and compartments on the slide, and avoid inferring their AOC1 transcription from protein color alone (HPA: reliability; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. Secreted protein, tissue location of RNA and protein is expected to differ.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Cells in tubules | High | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Placenta | Trophoblastic cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot AOC1 chromogenic IHC by checking retrieval, staining compartment, tissue controls and scoring against the reported evidence.
Both anti-AOC1 antibodies have human paraffin-section IHC images and T-47D cell IF images; both list human and monkey reactivity (catalog image captions; catalog reactivity).
PB10040 has IHC images from human colonic adenoma, placenta and renal cell carcinoma paraffin sections, plus a T-47D cell IF image (PB10040 image captions). A08386-1 has a human colorectal adenocarcinoma paraffin-section IHC image and a T-47D cell IF image (A08386-1 image captions).
Which to pick: For tissue IHC, choose PB10040 for the human colonic adenoma example or A08386-1 for the human colorectal adenocarcinoma example; each caption uses 2 μg/ml on a paraffin section, and neither reports the fixative (respective IHC captions). For IF/ICC, A08386-1 lists an IF concentration of 5 μg/ml and shows T-47D cell IF data (A08386-1 catalog; IF caption). For cross-species planning, both list human and monkey reactivity, but the supplied IHC and IF images show human samples only (catalog reactivity; image captions).