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- Table of Contents
Plan ASNS staining in paraffin sections using pancreatic exocrine glandular cells as a high-staining reference (HPA tissue IHC). Start the IHC-validated antibody at 2–5 μg/mL (datasheet A03302-2), and score cytoplasmic staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in tissue sections (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining in pancreas, brain and stomach (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03302-2) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA show medium consistency; verify locally (HPA tissue IHC) | |
| Regulation | Expression regulation not annotated (UniProt) | |
| Isoform / epitope | 3 isoforms; epitope effects are unknown (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A03302-2) is accompanied by three published ASNS IHC protocols (PMC9424662; PMC10393983; PMC8440958).
| Sample | Paraffin-embedded human gastric carcinoma tissue; fixative not specified (datasheet A03302-2) |
| Fixation | Image fixative and duration unreported (datasheet A03302-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03302-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03302-2) |
| Primary antibody | Rabbit anti-ASNS, 2-5 μg/ml (datasheet A03302-2) |
| Primary incubation | Overnight at 4 °C (datasheet A03302-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03302-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ASNS-positive staining in purkinje cells of cerebellum (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several different tissue types, including pancreas, brain and stomach. No signal in the no-primary control. |
ASNS staining should be predominantly cytoplasmic, consistent with HPA tissue IHC and supported cytosolic ICC-IF localization (HPA: tissue IHC; HPA: cytosol supported). Strong examples include pancreatic exocrine glandular cells, cerebellar Purkinje cells, stomach glandular cells and placental trophoblastic cells (HPA: High in each). HPA rates the tissue IHC pattern Approved, with medium consistency against RNA data and external verification pending (HPA: tissue IHC). UniProt reports no transmembrane segment (UniProt P08243 topology).
| Cytoplasmic staining in pancreatic exocrine glandular cells or cerebellar Purkinje cells. | This matches two High IHC examples (HPA: High in pancreatic exocrine glandular cells; HPA: High in Purkinje cells). Compare cells within the section before judging overall intensity: an appropriate positive pattern is cell specific and cytoplasmic (HPA: tissue IHC profile). |
| Predominantly nuclear, membranous or sharply extracellular staining. | The compartment conflicts with supported cytosolic ICC-IF localization and the cytoplasmic tissue IHC profile (HPA: cytosol supported; HPA: tissue IHC). Treat it as suspect and review morphology, controls and detection background before interpreting it as ASNS; UniProt provides no subcellular annotation (UniProt P08243). |
| Strong staining in adrenal glandular cells or lung alveolar cells. | These particular cell populations were Not detected in HPA tissue IHC (HPA: adrenal glandular cells Not detected; HPA: lung alveolar cells Not detected). Check cell identity and controls; unexpected color can reflect antibody cross-reactivity or endogenous detection activity. An HPA negative example does not establish that every cell in that organ is negative. |
| Diffuse color across cells, stroma and blank areas. | A broad haze does not resemble HPA's cytoplasmic, cell-specific tissue pattern (HPA: tissue IHC profile). General IHC causes include insufficient washing, nonspecific antibody binding or endogenous enzyme activity. Assess a no-primary control and review blocking, washing and detection settings before scoring cells. |
| No convincing cytoplasmic signal in pancreatic exocrine glandular cells. | That conflicts with a High HPA example (HPA: High in pancreatic exocrine glandular cells), but a single section cannot establish ASNS absence. Confirm that the expected cells are present, then review the antibody's IHC-P conditions, antigen retrieval and detection controls; HPA does not report ASNS-specific fixation sensitivity. |
| Tissue and cell selection | HPA records High staining in pancreatic exocrine glandular, Purkinje, placental trophoblastic, stomach glandular and tonsillar germinal center cells (HPA: tissue IHC). It also records Low neuronal staining in hippocampus and Not detected staining in adrenal glandular cells (HPA: tissue IHC). Select and score the named cell population, rather than assigning one result to an entire organ. |
| Strength of the tissue evidence | The HPA tissue profile is Approved, with medium consistency between staining and RNA expression and external verification pending (HPA: tissue IHC reliability). HPA lists IHC as Approved for HPA029318 and HPA064737 (HPA: antibodies); those labels support cautious comparison with the reported pattern, not a universal result for every antibody or specimen. |
| Topology and isoforms | UniProt lists no transmembrane segment and three ASNS isoforms (UniProt P08243 topology; UniProt P08243 isoforms). The supplied record gives no epitope map for the catalog antibody, so it cannot establish whether all isoforms stain equally or explain an unexpected compartment. Interpret staining location against the observed HPA cytosolic pattern (HPA: cytosol supported). |
| Processing and modifications | UniProt lists no signal peptide or propeptide and a chain spanning residues 2–561; it also records modifications including acetyllysine 385 and phosphorylation at 545 and 557 (UniProt P08243 processing; UniProt P08243 modified residues). No supplied source links these features to IHC staining strength, retrieval response or epitope accessibility. |
| IF/ICC Q: Where should ASNS fluorescence appear? | A: Predominantly in the cytosol (HPA: cytosol supported). HPA lists ICC as Enhanced for HPA004924 and HPA064737 (HPA: antibodies). Compare that localization with the IHC pattern, but use a dedicated IF/ICC guide for the separate workflow; the supplied record does not support an IF protocol here. |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in a pancreatic positive control. | The result conflicts with High staining reported for exocrine glandular cells (HPA: pancreas IHC); the relevant cells may be absent, or a general IHC workflow step may have failed. | Locate exocrine glandular cells, confirm control-slide performance, and check the chosen antibody's IHC-P instructions for retrieval, dilution and detection. Do not infer ASNS-specific fixation sensitivity from HPA. |
| Strong nuclei but little cytoplasm. | Nuclear dominance conflicts with HPA cytoplasmic tissue staining and supported cytosolic ICC-IF localization (HPA: tissue IHC; HPA: cytosol supported). | Review morphology and the no-primary control, then reassess antibody specificity and detection conditions before scoring nuclear color as ASNS. |
| Color in stromal or cell-free regions. | That distribution differs from the cell-associated cytoplasmic profile (HPA: tissue IHC); general IHC background or endogenous detection activity is possible. | Check a no-primary control and review blocking, washing and detection steps. Score only identifiable cells with a plausible compartment pattern. |
| Strong signal in an HPA negative cell population. | HPA reports Not detected staining for cells such as adrenal glandular cells and lung alveolar cells (HPA: tissue IHC). Misidentified cells, cross-reactivity or detection background may explain a mismatch. | Verify cell identity and include negative and no-primary controls; investigate reproducible signal before calling that population ASNS positive. |
| Unexpectedly weak staining in a selected tissue. | HPA levels differ by cell population: pancreatic exocrine cells are High, while hippocampal neuronal cells are Low (HPA: tissue IHC). A weak result may therefore fit the selected population. | Compare the named cells and their HPA level, then check a High positive control before changing general IHC conditions or calling the run a failure. |
| IHC and ICC-IF appear to disagree. | HPA reports cytoplasmic tissue IHC and supported cytosolic ICC-IF localization, but uses application-specific antibody validation labels (HPA: tissue IHC; HPA: subcellular; HPA: antibodies). | Confirm that the same cell population and compartment are being compared. Review each antibody's validation for its application; an ICC Enhanced label alone does not establish its IHC performance (HPA: antibodies). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Pancreas | Exocrine glandular cells | High | Protein (IHC) | HPA → |
| Placenta | Trophoblastic cells | High | Protein (IHC) | HPA → |
| Stomach | Glandular cells | High | Protein (IHC) | HPA → |
| Tonsil | Germinal center cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s paraffin-section result as the IHC starting point, then assess cytoplasmic staining against appropriate tissue and detection controls.
Both anti-ASNS antibodies have human paraffin-section IHC images; one also has a human paraffin-section IF image. Both list human, mouse, and rat reactivity (catalog image captions; catalog reactivity).
A03302-2 has IHC images from paraffin-embedded human gastric carcinoma, lung cancer, and testicular germ cell tumors, plus an IF image from paraffin-embedded human intestinal cancer (A03302-2 IHC/IF captions). M03302 lists IHC and ICC/IF applications and has an IHC image from paraffin-embedded human bladder (M03302 applications; M03302 IHC caption).
Which to pick: For tissue IHC, choose A03302-2 when its documented human tumor examples match your sample; M03302 provides a paraffin-embedded human bladder example (A03302-2 IHC captions; M03302 IHC caption). For IF, A03302-2 has a human tissue image; M03302 lists ICC/IF but has no supplied IF image (A03302-2 IF caption; M03302 applications and image alts). Both list human, mouse, and rat reactivity, although the supplied tissue images are human only; M03302 is a rabbit monoclonal, A03302-2 has no clone specified, and neither IHC caption reports a fixative (catalog reactivity and clone fields; IHC captions).