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- Table of Contents
ASS1 shows cytoplasmic staining in several tissues, including liver and kidney (HPA tissue IHC). Use this guide to plan paraffin-section staining around the catalog antibody’s IHC evidence (datasheet M02212-1) and cell-specific controls (standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC); cytosolic protein (UniProt) | |
| Staining pattern | Cytoplasmic staining in hepatocytes and urothelial cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M02212-1) | |
| Positive control | Kidney+4 more · see all | |
| Negative control | Bone marrow+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA show medium consistency (HPA tissue IHC) | |
| Regulation | Expression regulation not reported (UniProt) | |
| Isoform / epitope | No annotated isoforms; one 1–412 chain (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: M02212-1) is accompanied by published ASS1 IHC methods for esophageal, pancreatic and ovarian tumor samples (PMC12650347; PMC5302782; PMC4858122).
| Sample | Paraffin-embedded human prostate cancer tissue; fixative not specified (datasheet M02212-1) |
| Fixation | Image fixative and duration unreported (datasheet M02212-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M02212-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M02212-1) |
| Primary antibody | Mouse monoclonal (clone 5I5) anti-ASS1, 2μg/ml (datasheet M02212-1) |
| Primary incubation | Overnight at 4 °C (datasheet M02212-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M02212-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ASS1-positive staining in bowman's capsule of kidney (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several tissues including kidney, liver and urinary bladder. No signal in the no-primary control. |
ASS1 is a cytosolic protein with no transmembrane segment (UniProt P00966: subcellular location and topology). In paraffin sections, expect cytoplasmic staining in hepatocytes and cells of Bowman’s capsule; both are reported as high in HPA tissue IHC (HPA: liver and kidney). HPA rates the tissue profile Enhanced but describes only medium consistency between staining and RNA expression (HPA: tissue reliability).
| Strong cytoplasmic staining in hepatocytes or cells of Bowman’s capsule. | This matches the expected compartment and two reported high-staining cell populations (UniProt P00966: cytosol; HPA: liver and kidney, High). Judge the pattern within the identified cells, since an entire tissue need not stain uniformly. |
| Predominantly nuclear, membranous or extracellular staining in an IHC section. | These are unexpected dominant patterns for cytosolic ASS1 (UniProt P00966: subcellular location and no transmembrane segment). Check morphology and detection controls before assigning them to ASS1; HPA’s uncertain additional nucleoplasmic ICC-IF location does not establish a dominant nuclear IHC pattern (HPA: subcellular). |
| Prominent staining of hematopoietic cells in bone marrow or germinal center cells in lymph node. | HPA reports ASS1 as not detected in those specific cell populations (HPA: bone marrow and lymph node). Consider cross-reactivity or endogenous detection activity, and compare with a high-staining control; the HPA observations do not prove absolute absence in every sample. |
| Broad color deposit over stroma, empty spaces or most cell types, obscuring cytoplasm. | This cannot be scored confidently as cell-specific ASS1 staining. Uneven detection background, endogenous activity or insufficient blocking are general IHC possibilities (standard IHC practice); HPA reports a cytoplasmic pattern in several tissues (HPA: tissue profile). |
| No visible signal in hepatocytes or cells of Bowman’s capsule. | A run with no signal in these reported high-staining cells needs technical review before a negative ASS1 call (HPA: liver and kidney, High). Check section integrity and controls, then examine retrieval, antibody exposure and detection as general IHC workflow variables (standard IHC practice). |
| Cell-specific tissue distribution | HPA reports High staining in hepatocytes, cells of Bowman’s capsule, type II alveolar cells, basal-layer skin cells and urothelial cells (HPA: tissue IHC). Choose and score the named cell population; HPA also reports Medium, Low and Not detected results elsewhere (HPA: tissue IHC). |
| Compartment and topology | Cytoplasmic IHC signal fits a cytosolic protein lacking a transmembrane segment or signal peptide (UniProt P00966: location, topology and processing). These annotations give no basis for expecting a surface or secreted staining pattern. |
| Strength of pattern evidence | HPA calls the tissue profile Enhanced while describing medium agreement with RNA; both listed antibodies have Enhanced IHC status (HPA: tissue reliability and antibody validation). These labels support pattern review, but do not guarantee identical intensity in every section. |
| Antigen retrieval | Retrieval conditions can be assessed with positive and negative controls as a general paraffin IHC workflow step (standard IHC practice). Neither HPA nor UniProt here supplies an ASS1-specific retrieval setting or fixation-sensitivity claim. |
| Epitope interpretation | UniProt lists modified residues, but the supplied record gives no antibody epitope or modification-dependent staining result (UniProt P00966: modified residues). Do not attribute a weak section to a particular modification without separate evidence. |
| Situation | Likely cause | Next action |
|---|---|---|
| The high-staining control is blank. | The cause is unresolved; retrieval, primary-antibody exposure or detection can fail in a paraffin IHC workflow (standard IHC practice). | Verify tissue and section quality, then check each workflow step and the same-run controls before interpreting test sections (standard IHC practice; HPA: hepatocytes and cells of Bowman’s capsule, High). |
| Color appears mainly in nuclei or along membranes. | That distribution conflicts with the expected cytosolic pattern (UniProt P00966: location and topology); morphology or nonspecific detection may be misleading (standard IHC practice). | Recheck compartment boundaries with the counterstain and compare a known high-staining cell population and detection controls (standard IHC practice; HPA: liver and kidney, High). |
| A reported Not detected cell population stains strongly. | Cross-reactivity or endogenous detection activity is possible, but HPA’s cell-specific observation alone cannot identify the cause (HPA: bone marrow or lymph node, Not detected). | Check a no-primary detection control and compare staining with a high-staining cell population on a controlled run (standard IHC practice; HPA: liver and kidney, High). |
| Diffuse color obscures the cells to be scored. | Blocking, washing or endogenous detection activity may contribute to background in chromogenic IHC (standard IHC practice). | Inspect a no-primary control, check blocking and washes, and score only identifiable cellular staining after background is resolved (standard IHC practice). |
| Staining intensity differs between sections. | HPA reports High, Medium, Low and Not detected findings across specified cell populations; differences in cell composition can affect the apparent section-wide result (HPA: tissue IHC). | Compare the same named cell type and a same-run high-staining control, then record intensity and background separately (standard IHC practice; HPA: liver and kidney, High). |
| Q: Should an IF/ICC nuclear signal be called expected ASS1 staining? | HPA supports cytosol as the main ICC-IF location and lists nucleoplasm only as an uncertain additional location (HPA: subcellular). | A: Prioritize cytosolic signal; treat nucleoplasmic signal as uncertain and assess it with appropriate IF controls (HPA: subcellular; standard IF practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Kidney | Bowman's capsule | High | Protein (IHC) | HPA → |
| Liver | Hepatocytes | High | Protein (IHC) | HPA → |
| Lung | Alveolar cells type II | High | Protein (IHC) | HPA → |
| Skin | Cells in basal layer | High | Protein (IHC) | HPA → |
| Urinary bladder | Urothelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot ASS1 staining in paraffin sections using the catalog antibody’s tissue IHC example, with one entry on adapting the assay to IF.
Anti-ASS1 antibodies have IHC images from human paraffin sections and rat liver, plus IF images from HEPG2 and MCF-7 cells (catalog image captions); listed reactivity includes human, mouse, rat and monkey (catalog reactivity).
M02212-1 shows human prostate cancer paraffin sections (M02212-1 IHC caption), and M02212-2 shows human breast cancer paraffin sections (M02212-2 IHC caption). A02212-1 shows human pancreatic cancer paraffin sections (A02212-1 IHC caption).
Which to pick: For tissue IHC, consider M02212-1: its captions show human prostate, breast and colon cancer paraffin sections and rat liver (M02212-1 IHC captions); the fixative is unreported in all three rendered IHC captions (M02212-1, M02212-2 and A02212-1 IHC captions). For IF/ICC, A02212-1 lists both applications and has an IF image in HEPG2 cells (A02212-1 applications and IF caption). For the broadest listed species coverage, M02212-1 (mouse monoclonal 5I5) and M02212-2 (mouse monoclonal 7I9) each list human, mouse, rat and monkey reactivity (catalog host, clone and reactivity); their IHC captions document human paraffin sections, and M02212-1 also documents rat liver (M02212-1 and M02212-2 IHC captions).