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- Table of Contents
Plan paraffin-section AURKB IHC around nuclear staining, most abundant in lymphoid immune cells and the gastrointestinal tract (HPA tissue IHC). A catalog antibody has a 1:50 IHC example in human tonsil (datasheet: M00762-1); interpret staining cautiously because presumed off-target binding was observed (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining in tissue (HPA tissue IHC) | |
| Staining pattern | Nuclear signal is most abundant in lymphoid immune and GI cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00762-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target staining warrants cautious scoring (HPA tissue IHC) | |
| Regulation | Higher in S/G2-M and cancer M phase (UniProt) | |
| Isoform / epitope | 5 isoforms; verify epitope coverage across variants (UniProt) |
Compare the catalog antibody protocol (datasheet: M00762-1) with 3 published AURKB IHC protocols (PMC7053608; PMC7960835; PMC10023558).
| Sample | Paraffin-embedded human bladder urothelial carcinoma tissue; fixative not specified (datasheet M00762-1) |
| Fixation | Image fixative and duration unreported (datasheet M00762-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00762-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00762-1) |
| Primary antibody | Rabbit monoclonal (clone FA-1) anti-AURKB, 1:50 (datasheet M00762-1) |
| Primary incubation | Overnight at 4 °C (datasheet M00762-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M00762-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | AURKB-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Nuclear expression in several tissues, most abundant in immune cells of lymphoid tissues and gastrointestinal tract. No signal in the no-primary control. |
AURKB is mainly nuclear in tissue IHC, with staining expected in selected lymphoid and gastrointestinal cells (HPA tissue IHC). During mitosis it moves from chromosomes and centromeres to the spindle midzone and midbody (UniProt Q96GD4). It has no transmembrane segment (UniProt Q96GD4 topology). HPA rates tissue IHC reliability Enhanced, while reporting medium staining–RNA consistency and presumed off-target binding that was disregarded (HPA tissue IHC).
| Distinct nuclear staining in appendix, colon, duodenum, rectum or small-intestine endocrine cells. | This fits the cell types scored High by HPA; interpret the signal in identified cells, since a High score for endocrine cells does not make every cell in that tissue an expected positive (HPA tissue IHC). |
| Nuclear signal in hematopoietic cells of bone marrow or non-germinal-center cells of lymph node. | Both cell populations are scored Medium, providing additional expected-positive patterns. Compare the named cell population and compartment before judging staining strength (HPA tissue IHC). |
| Strong membrane staining or uniform cytoplasmic staining without a convincing nuclear pattern. | That distribution does not match the predominant tissue nuclear profile or a protein lacking a transmembrane segment. Check morphology and detection controls before assigning it to AURKB; mitotic spindle or midbody signal has a separate phase-dependent basis (HPA tissue IHC; UniProt Q96GD4 topology and subcellular location). |
| Prominent staining in adipocytes or heart-muscle cardiomyocytes, particularly with little expected-positive nuclear staining. | HPA scores those specific cell populations Not detected. Treat the mismatch as possible nonspecific antibody binding or detection activity, rather than evidence that the whole tissue is AURKB-negative; HPA also reports presumed off-target binding (HPA tissue IHC; standard IHC practice). |
| Diffuse color across nuclei, cytoplasm and tissue edges, or no signal in an expected-positive cell population. | Diffuse color limits compartment scoring and can reflect background from the staining workflow. Absence of signal in a sampled High-scoring endocrine population calls for a control and assay check before concluding that AURKB is absent from the specimen (HPA tissue IHC; standard IHC practice). |
| Cell identity and sampling | HPA scores gastrointestinal endocrine cells High, bone-marrow hematopoietic cells and lymph-node non-germinal-center cells Medium, and skin basal-layer cells Low; assess the named cells rather than averaging an entire section (HPA tissue IHC). |
| Mitotic phase | AURKB occupies chromosome arms and inner centromeres from prophase through metaphase, then the spindle midzone and midbody from anaphase through cytokinesis. A static section can therefore show different compartments in different mitotic cells (UniProt Q96GD4 subcellular location). |
| Antibody evidence | HPA lists CAB005862 as IHC Enhanced and HPA037708 as ICC Supported; those statuses apply to different assays. Tissue IHC also carries a medium staining–RNA consistency caveat and a note about disregarded presumed off-target binding (HPA antibodies; HPA tissue IHC). |
| IF/ICC Q&A: What location should fluorescence show? | Mainly nucleoplasm, with supported midbody and uncertain kinetochore localization in HPA ICC-IF; phase-dependent chromosome and spindle locations are also described by UniProt. This IF/ICC observation does not substitute for tissue IHC validation (HPA subcellular; UniProt Q96GD4; HPA antibodies). |
| Isoforms and epitope coverage | UniProt lists five AURKB isoforms, but the supplied record gives no antibody epitope or isoform-specific detection result. Do not infer which isoforms contribute to tissue staining (UniProt Q96GD4 isoforms). |
| Situation | Likely cause | Next action |
|---|---|---|
| No nuclear signal in sampled gastrointestinal endocrine cells. | The selected cells are HPA High, so an empty expected-positive field may reflect tissue sampling or an unsuccessful staining run; HPA does not establish which step failed (HPA tissue IHC; standard IHC practice). | Confirm the endocrine cells are present and review an appropriate positive control, antibody dilution, antigen-retrieval run and detection reagents using the validated IHC workflow (standard IHC practice). |
| Signal is chiefly membranous or broadly cytoplasmic. | This conflicts with the HPA nuclear tissue profile and UniProt's lack of a transmembrane segment, although localized spindle or midbody staining may occur in mitotic cells (HPA tissue IHC; UniProt Q96GD4). | Identify mitotic figures and recheck the nuclear counterstain; compare the pattern with an expected-positive section and evaluate nonspecific detection if the mismatch persists (standard IHC practice). |
| Adipocytes or cardiomyocytes appear strongly positive. | HPA reports these cell types as Not detected and notes presumed off-target binding in its tissue assessment (HPA tissue IHC). | Check cell identification and inspect a no-primary control for endogenous or reagent-driven color; interpret residual staining cautiously against HPA's cell-specific reference (standard IHC practice; HPA tissue IHC). |
| Diffuse chromogen obscures cell boundaries or nuclei. | Excess background can prevent reliable localization or scoring; its specific source cannot be assigned from the AURKB evidence supplied here (standard IHC practice). | Review the no-primary control, blocking, washes and detection development; repeat with a clean counterstain that permits nuclear assessment (standard IHC practice). |
| Only scattered cells stain in a field expected to contain AURKB. | AURKB expression varies with cell cycle, while HPA levels describe named cell populations rather than every cell in a section (UniProt Q96GD4 tissue specificity; HPA tissue IHC). | Record the stained cell type and compartment, inspect additional representative fields, and compare with HPA's cell-specific levels before calling the result unexpectedly weak (HPA tissue IHC; standard IHC practice). |
| The IHC result is disputed using an ICC-IF image. | HPA gives separate antibody statuses for IHC and ICC, and its ICC-IF summary includes a kinetochore location marked uncertain (HPA antibodies; HPA subcellular). | Judge tissue IHC against its tissue and antibody evidence, with a matched positive section and detection controls; use ICC-IF localization as context for mitotic structures (HPA tissue IHC; HPA antibodies; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | High | Protein (IHC) | HPA → |
| Rectum | Endocrine cells | High | Protein (IHC) | HPA → |
| Skin | Cells in basal layer | Low | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
AURKB staining depends on cell cycle stage and compartment. Use the antibody’s documented paraffin-section conditions as the starting point, then assess morphology and controls.
IHC images show AURKB staining in human bladder urothelial carcinoma, liver carcinoma and tonsil (catalog IHC captions); an IF image shows HepG2 cells (A00762T232 IF caption).
M00762-1 has paraffin-section IHC images from human bladder urothelial carcinoma and tonsil (M00762-1 IHC captions); A00762T232 has a paraffin-section IHC image from human liver carcinoma (A00762T232 IHC caption). M00762-5 has a human tonsil IHC image (M00762-5 IHC caption).
Which to pick: For tissue IHC, choose M00762-1 when its documented EDTA pH 8.0 retrieval and 1:50 dilution fit your paraffin sections (M00762-1 IHC caption); the caption does not report the fixative. For IF/ICC, M00762-1 lists both applications (M00762-1 catalog applications); A00762T232 lists IF and has a HepG2 IF image with phospho-peptide blocking (A00762T232 catalog applications and IF caption). For cross-species work, A00762T232 lists human, monkey, mouse and rat reactivity, although its tissue IHC image shows only human liver carcinoma in a paraffin section and does not report the fixative (A00762T232 catalog reactivity and IHC caption).