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Plan AXIN2 paraffin IHC using colon glandular cells with high staining and prostate glandular cells with low staining (HPA tissue IHC). The IHC-validated antibody A01772-2 has a recommended concentration of 2–5 μg/mL (datasheet A01772-2); assess cytoplasmic and nuclear staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm expected; nuclei also observed (UniProt; HPA tissue IHC) | |
| Staining pattern | General cytoplasmic and nuclear staining; high in glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01772-2) | |
| Positive control | Breast+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Antibody staining and RNA have medium consistency (HPA tissue IHC) | |
| Regulation | Expression regulation not specified (UniProt) | |
| Isoform / epitope | One full-length chain; no isoforms reported (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A01772-2) appears alongside published AXIN2 IHC protocols for rat lung (PMC3174135), human oral tissue (PMC3934066), and human osteosarcoma with adjacent bone (PMC8464802).
| Sample | Paraffin-embedded human renal carcinoma tissue; fixative not specified (datasheet A01772-2) |
| Fixation | Image fixative and duration unreported (datasheet A01772-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01772-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01772-2) |
| Primary antibody | Rabbit anti-AXIN2, 2-5 μg/ml (datasheet A01772-2) |
| Primary incubation | Overnight at 4 °C (datasheet A01772-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01772-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | AXIN2-positive staining in adipocytes of breast (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic and nuclear expression. No signal in the no-primary control. |
AXIN2 is a cytoplasmic protein with no transmembrane segment (UniProt Q9Y2T1 topology). In paraffin IHC, expect cytoplasmic staining with possible nuclear staining in the relevant cells (HPA tissue IHC: general cytoplasmic and nuclear expression). HPA reports high staining in several cell populations, including colon glandular cells and lung macrophages (HPA tissue IHC: High). Its tissue IHC profile is Approved, with medium consistency between staining and RNA data (HPA tissue IHC).
| Colon or duodenal glandular cells show clear cytoplasmic staining, with or without a nuclear component (HPA tissue IHC: High; general cytoplasmic and nuclear expression). | This matches a reported high staining cell population and the broad IHC compartment pattern (HPA tissue IHC). Compare cells within the section before assigning intensity; HPA's High category describes the reported pattern, not a required score for every specimen (HPA tissue IHC: High). |
| Signal is confined to extracellular deposits or tissue-free spaces, while intact cells lack staining (UniProt Q9Y2T1: cytoplasm; HPA tissue IHC: cytoplasmic and nuclear). | That distribution does not fit the reported cellular pattern (UniProt Q9Y2T1; HPA tissue IHC). Check section edges, precipitate and detection controls before calling AXIN2 positive (general IHC practice). Nuclear staining alone needs closer review because nuclear expression is reported in tissue IHC (HPA tissue IHC). |
| Strong staining appears mainly in oral mucosal or esophageal squamous cells (HPA tissue IHC: Low), instead of the expected high staining cells on the same run (HPA tissue IHC: High). | The distribution conflicts with those HPA tissue examples, but Low does not mean absent (HPA tissue IHC: Low). Consider cross-reactivity or endogenous detection activity; compare a matched control and cell morphology before interpreting the contrast (general IHC practice). |
| A uniform brown haze covers many cell types and blank spaces, obscuring cell boundaries (general chromogenic IHC practice). | The haze prevents assessment of the cellular cytoplasmic and nuclear pattern reported for AXIN2 (HPA tissue IHC). Review blocking, washes, detection chemistry and section quality with a negative control (general IHC practice); the haze alone cannot establish AXIN2 expression. |
| No convincing signal appears in colon glandular cells or lung macrophages (HPA tissue IHC: High). | An expected high staining population has failed to show the reported pattern (HPA tissue IHC). First check tissue preservation, retrieval, antibody and detection controls (general IHC practice). HPA's Approved rating has medium staining to RNA consistency, so an individual negative section is not decisive (HPA tissue IHC). |
| Cell compartment and topology (UniProt Q9Y2T1; HPA tissue IHC) | UniProt places AXIN2 in the cytoplasm and lists no transmembrane segment; HPA tissue IHC reports cytoplasmic and nuclear expression. Judge signal against cell boundaries and nuclei, rather than requiring membrane staining (UniProt Q9Y2T1 topology; HPA tissue IHC). |
| Choice of tissue and cell population (HPA tissue IHC) | Colon and duodenal glandular cells, cerebral cortical neurons and lung macrophages are reported High; oral and esophageal squamous cells are Low (HPA tissue IHC). Identify the scored cell population before comparing sections; these categories do not make every other cell negative (HPA tissue IHC). |
| Strength of IHC evidence (HPA tissue IHC; HPA antibodies) | The tissue profile is Approved with medium staining to RNA consistency; CAB012283 and CAB017783 are each listed as IHC Approved (HPA tissue IHC; HPA antibodies). Treat unexpected staining as a finding to verify, rather than assuming the profile proves specificity in every specimen. |
| Processing and isoform record (UniProt Q9Y2T1) | UniProt lists one chain spanning residues 1–843, no signal peptide or propeptide, and no recorded isoforms (UniProt Q9Y2T1). The supplied record gives no epitope position, so it cannot predict which retrieval condition or compartment an antibody will favour. |
| IF/ICC Q&A: Should fluorescence reproduce every IHC compartment? (HPA subcellular; HPA antibodies) | No. HPA supports cytosol in ICC-IF, while nucleoplasm and plasma membrane are marked uncertain; CAB017783 has ICC Uncertain status and CAB012283 has no ICC status listed (HPA subcellular; HPA antibodies). Interpret IF/ICC on its separate evidence and guide page. |
| Situation | Likely cause | Next action |
|---|---|---|
| A high staining reference population is blank, such as colon glandular cells (HPA tissue IHC: High). | Tissue condition, retrieval, antibody incubation or detection may have failed (general IHC practice); HPA provides no AXIN2 specific fixation sensitivity claim. | Review run controls, section quality, retrieval and detection steps, then repeat with a documented IHC condition if needed (general IHC practice). Do not infer absent AXIN2 from the failed control. |
| Brown colour blankets cells and acellular areas (general chromogenic IHC practice). | Excess detection background, incomplete blocking or inadequate washing can obscure localisation (general IHC practice). | Inspect the negative control and detection only control; adjust blocking, washes and development within the assay instructions (general IHC practice). Reassess whether intact cells show the HPA cytoplasmic or nuclear pattern (HPA tissue IHC). |
| Colour is concentrated at tissue edges or in extracellular debris (general IHC practice). | Edge artefact or chromogen deposit can mimic a positive area (general IHC practice); it does not match the reported cellular AXIN2 pattern (HPA tissue IHC). | Compare intact central tissue, morphology and a negative control before scoring; exclude deposits without a corresponding cellular pattern (general IHC practice; HPA tissue IHC). |
| Low category squamous epithelium stains strongly (HPA tissue IHC: Low in oral mucosa and esophagus). | Specificity or endogenous detection activity is possible, though Low is not equivalent to zero expression (HPA tissue IHC; general IHC practice). | Compare high staining reference cells and appropriate detection controls, then document the cell type and intensity rather than declaring a false positive from category alone (HPA tissue IHC; general IHC practice). |
| A slide looks exclusively nuclear or exclusively membrane associated (HPA tissue IHC; HPA subcellular). | Tissue IHC permits nuclear expression, whereas plasma membrane localisation is uncertain in ICC-IF; an exclusive pattern needs context (HPA tissue IHC; HPA subcellular). | Verify cell boundaries and counterstained nuclei, compare the negative control and another reported high staining population, and record the observed compartment (general IHC practice; HPA tissue IHC). |
| Two antibody stains disagree on the same tissue (HPA antibodies: CAB012283 and CAB017783 IHC Approved). | Differences in reagent performance or assay conditions can produce discordant stains (general IHC practice); Approved status does not resolve a specific disagreement (HPA antibodies). | Compare the same cell populations, controls and detection conditions, then report the discordance instead of selecting the stronger stain as proof (general IHC practice; HPA antibodies). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Breast | Adipocytes | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: AXIN2 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot AXIN2 staining in paraffin sections by checking retrieval, tissue handling, signal location, controls, and scoring before interpreting pathway activity.
AXIN2 antibodies have IHC images from human paraffin sections and mouse and rat lung tissue, plus IF images from rat lung cells, mouse lung tissue and HepG2 cells (catalog image captions).
A01772-2 has IHC images from human renal carcinoma, spleen and thyroid cancer paraffin sections (A01772-2 IHC captions). A01772 has IHC images from rat and mouse lung tissue and IF images from rat lung cells, mouse lung tissue and HepG2 cells (A01772 IHC/IF captions).
Which to pick: For human paraffin-section IHC, choose A01772-2: its renal carcinoma image documents EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody; the fixative is unreported (A01772-2 IHC caption). For IF, choose A01772, which lists IF and has cellular and tissue IF images at 20 μg/mL (A01772 applications and IF captions). For work across human, mouse and rat, A01772 lists all three as reactive, while its pictured IHC results cover mouse and rat lung tissue (A01772 reactivity and IHC captions).