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- Table of Contents
Plan BDKRB2 paraffin-section IHC using the cytoplasmic tissue pattern reported in CNS and the receptor’s membrane topology (HPA tissue IHC; UniProt). Compare neuronal staining with cells reported as not detected, and interpret intensity cautiously because antibody staining has low consistency with RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining in CNS neuronal cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M03117) | |
| Positive control | Caudate+3 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent across samples (standard IHC practice; not target-specific) | |
| Caveat | Antibody staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Staining regulation is not specified (UniProt) | |
| Isoform / epitope | 2 isoforms; extracellular versus cytoplasmic epitope coverage is unknown (UniProt) |
The catalog antibody’s IHC-P protocol is accompanied by two published chromogenic BDKRB2 IHC protocols: human amnion and rat paraffin sections (PMC9130483; PMC8275397).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet M03117) |
| Fixation | Image fixative and duration unreported (datasheet M03117); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M03117); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M03117) |
| Primary antibody | Rabbit monoclonal (clone AFAG-2) anti-BDKRB2, 1:50 recommended; image 1:200 (datasheet M03117) |
| Primary incubation | Overnight at 4 °C (datasheet M03117) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M03117) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | BDKRB2-positive staining in neuronal cells of caudate (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in a group of tissues, including CNS. No signal in the no-primary control. |
BDKRB2 is a seven-pass cell-membrane receptor (UniProt P30411 topology). In tissue IHC, HPA reports cytoplasmic staining in a group of tissues, including neuronal cells in the caudate and cerebral cortex (HPA tissue IHC). HPA rates its tissue staining “Approved,” while noting low consistency between antibody staining and RNA expression (HPA tissue IHC reliability). Interpret compartment and tissue together rather than treating either observation alone as proof of specificity.
| Strong cytoplasmic staining in caudate or cerebral-cortex neuronal cells. | This matches the reported High neuronal staining in both tissues (HPA tissue IHC). A visible cell boundary is compatible with receptor localization at the membrane (UniProt P30411 subcellular location), but membrane outlining is not required by the reported tissue IHC profile (HPA tissue IHC). |
| Predominantly nuclear staining, with little signal in neuronal cytoplasm. | Nuclear-only staining does not match the reported cytoplasmic tissue pattern (HPA tissue IHC) or cell-membrane localization (UniProt P30411). Treat it as suspect and check control sections, counterstain, and detection background before assigning BDKRB2 positivity (general IHC practice). |
| Strong signal in cells listed as unstained by HPA, such as adipocytes or bone-marrow hematopoietic cells. | HPA reports BDKRB2 as not detected in these specified cells (HPA tissue IHC). Unexpected signal may reflect cross-reactivity or endogenous detection activity; compare negative controls and tissue context before interpreting it as target staining (general IHC practice). |
| Diffuse chromogen across cells and surrounding tissue, without clear cell-specific staining. | A widespread haze obscures the reported cell-specific pattern (HPA tissue IHC). Consider nonspecific antibody binding or detection background, then review blocking, washes, chromogen development, and a no-primary control (general IHC practice). |
| No staining in neuronal cells of caudate or cerebral cortex. | This conflicts with HPA’s High staining in those cells (HPA tissue IHC). First check section quality, antibody dilution, antigen retrieval, and detection controls (general IHC practice). A negative result alone cannot resolve HPA’s reported staining–RNA inconsistency (HPA tissue IHC reliability). |
| Compartment and topology | The receptor has 7 transmembrane segments and a cell-membrane location (UniProt P30411 topology and subcellular location). Tissue IHC is nevertheless described as cytoplasmic (HPA tissue IHC). Do not require a sharply outlined membrane to score the reported IHC pattern. |
| Tissue and cell selection | HPA reports High neuronal staining in caudate and cerebral cortex, Medium neuronal staining in hippocampus, and no detected staining in several specified cell populations (HPA tissue IHC). Compare the same cell type when judging intensity; a whole-section score can hide that distinction (general IHC practice). |
| Strength of validation | The tissue IHC reliability label is “Approved,” with low staining–RNA consistency (HPA tissue IHC reliability). HPA lists IHC as “Approved” for HPA050841 and ICC as “Approved” for HPA003551 (HPA antibodies). Those assay labels do not make the two antibodies interchangeable. |
| Epitope and processing limits | UniProt lists extracellular and cytoplasmic regions, two isoforms, and three glycosylation sites (UniProt P30411 topology, isoforms, glycosylation). The supplied record gives no antibody epitope or isoform-specific staining data, so it cannot predict which compartment, isoform, or retrieval condition a particular antibody will favor. |
| IF/ICC Q: What pattern should I expect? | A: Mainly plasma-membrane signal, with additional vesicle and cytokinetic-bridge localization (HPA subcellular ICC-IF). This is an ICC-IF observation; the paraffin-section IHC description remains cytoplasmic (HPA tissue IHC). Use the separate IF/ICC guide for assay setup. |
| Situation | Likely cause | Next action |
|---|---|---|
| Caudate or cerebral-cortex neuronal cells are blank. | An assay failure is possible because these cells show High staining in HPA tissue IHC (HPA tissue IHC). | Check tissue preservation, antigen retrieval, primary-antibody dilution, and detection reagents with an appropriate positive control (general IHC practice). The payload supplies no target-specific retrieval setting. |
| Only nuclei are strongly stained. | This conflicts with the cytoplasmic tissue pattern (HPA tissue IHC) and cell-membrane annotation (UniProt P30411). | Review the counterstain and no-primary control, and check for nonspecific primary or detection signal before scoring nuclei as positive (general IHC practice). |
| Chromogen appears broadly in expected-negative cell populations. | HPA lists adipocytes and bone-marrow hematopoietic cells as not detected (HPA tissue IHC); cross-reactivity or endogenous detection activity is possible (general IHC practice). | Compare a no-primary control and an appropriate detection control; review the blocking step and whether staining is restricted to identifiable cells (general IHC practice). |
| The whole section has diffuse brown background. | Nonspecific binding, residual detection activity, or excessive chromogen development can obscure cell-specific staining (general IHC practice). | Inspect the no-primary control, then review blocking, wash stringency, antibody dilution, and development time (general IHC practice). |
| IHC looks cytoplasmic, while ICC-IF images look membrane-enriched. | HPA reports cytoplasmic tissue IHC and mainly plasma-membrane ICC-IF localization (HPA tissue IHC; HPA subcellular ICC-IF). | Interpret each assay against its own reported pattern and validation status (HPA tissue IHC; HPA antibodies); do not use the ICC-IF pattern as a required IHC scoring rule. |
| A weakly stained tissue is judged negative by comparison with cortex. | HPA reports Low staining in several tissues but High staining in cerebral-cortex neuronal cells (HPA tissue IHC). | Score the specified cells and their local background in each tissue, and retain the HPA tissue category when comparing results (HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Hippocampus | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Nasopharynx | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
Troubleshooting guidance for chromogenic BDKRB2 IHC in paraffin sections, with one Q&A on adapting the analysis to IF.
The IHC-validated antibody M03117 has paraffin-section images from human liver cancer and mouse small intestine (catalog: M03117 IHC captions); no IF/ICC image is supplied (catalog: M03117 IF images).
M03117 is listed for IHC and has a paraffin-section image from human liver cancer (catalog: M03117 applications and IHC caption). The same SKU has a paraffin-section image from mouse small intestine (catalog: M03117 IHC caption).
Which to pick: Choose M03117 for paraffin-section tissue IHC: it is a rabbit monoclonal with human and mouse reactivity, supported by its own IHC captions (catalog: M03117 host, clone, reactivity and IHC captions). Its captions do not report the fixative (catalog: M03117 IHC captions). No IF/ICC application or image is supplied for M03117, so the payload does not support an IF/ICC recommendation (catalog: M03117 applications and IF images).