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- Table of Contents
Plan CAMK2A chromogenic IHC in paraffin sections using CNS neurons and neuropil as the expected staining pattern (HPA tissue IHC). Compare with a tissue control reported as unstained, and interpret positive staining cautiously because the HPA profile may reflect proteins from more than one gene (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Neuronal neuropil (HPA tissue IHC); synaptic sites expected (UniProt) | |
| Staining pattern | CNS neurons and neuropil; finer pattern unspecified (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M03241) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image M03241) | |
| Caveat | Staining may reflect proteins from more than one gene (HPA tissue IHC) | |
| Regulation | Expression regulation unreported (UniProt) | |
| Isoform / epitope | 2 isoforms (A/B); epitope coverage unknown (UniProt) |
The catalog antibody’s IHC-P protocol is followed by one published CAMK2A staining protocol for paraffin-embedded brain sections (PMC3660221).
| Sample | Paraffin-embedded human colon cancer tissue; fixative not specified (datasheet M03241) |
| Fixation | Image fixative and duration unreported (datasheet M03241); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M03241); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M03241) |
| Primary antibody | Rabbit monoclonal (clone AAFF-3) anti-CAMK2A, 1:50 (datasheet M03241) |
| Primary incubation | Overnight at 4 °C (datasheet M03241) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M03241) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CAMK2A-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Selective expression in neuropil and neurons in CNS. No signal in the no-primary control. |
CAMK2A is associated with synapses, postsynaptic densities, dendritic spines and dendrites, and has no transmembrane segment (UniProt Q9UQM7). In paraffin-section IHC, expect staining in CNS neurons and neuropil (HPA: selective CNS profile). HPA rates its tissue pattern Supported, with medium agreement between staining and RNA data, and cautions that the antibodies may also detect proteins from more than one gene (HPA: tissue IHC).
| Neuronal cells and surrounding neuropil stain strongly in cerebral cortex or caudate; cerebellar granular-layer cells also stain (HPA: High in these sites). | This fits the reported CNS pattern and synaptic association (HPA: tissue IHC; UniProt Q9UQM7). At IHC resolution, neuropil staining cannot establish staining of individual postsynaptic densities; assess the tissue pattern alongside a control for background (general IHC practice). |
| Staining is predominantly nuclear, with little corresponding signal in neurons or neuropil (HPA: selective CNS profile). | A nuclear-only pattern is inconsistent with the listed synaptic, dendritic and postsynaptic locations (UniProt Q9UQM7). Check whether staining persists in the negative detection control and whether counterstain has been mistaken for chromogen (general IHC practice). |
| Adipocytes or skin fibroblasts stain strongly, while the selected neuronal positive control remains weak (HPA: Not detected in those cells; High in CNS neuronal cells). | Consider antibody cross-reactivity or endogenous detection activity (general IHC practice). Cell identity matters: glandular cells in adrenal gland, endometrium and gallbladder also show High staining, so staining outside the CNS alone does not establish an artefact (HPA: tissue IHC). |
| Chromogen spreads across several cell types or extracellular spaces without a clear cellular pattern (general IHC practice). | This is diffuse background rather than a convincing match to the selective CNS profile (HPA: tissue IHC). Review blocking, primary-antibody concentration and wash stringency; endogenous enzyme activity can also contribute with chromogenic detection (general IHC practice). |
| No signal appears in neuronal cells of cerebral cortex or caudate (HPA: High in those cells). | First check section integrity and the assay controls, then review antigen retrieval, primary-antibody dilution and detection steps (general IHC practice). HPA's Supported rating does not guarantee that every antibody or run will reproduce its reported pattern (HPA: tissue IHC). |
| Subcellular context | Synapse, postsynaptic density, dendrite and dendritic spine are listed locations (UniProt Q9UQM7). Use these to interpret a neuronal and neuropil pattern; chromogenic section IHC does not resolve those structures individually (general IHC practice). |
| Tissue and cell context | Cortex and caudate neuronal cells and cerebellar granular-layer cells are High, whereas adipocytes and skin fibroblasts are Not detected (HPA: tissue IHC). The reported High glandular-cell staining means CNS restriction should not be imposed on every section (HPA: tissue IHC). |
| Antibody validation limit | Four listed antibodies have Supported IHC ratings (HPA: HPA051783, HPA051785, HPA053973, CAB004330). HPA also reports medium staining–RNA consistency and possible detection of proteins from more than one gene; a plausible pattern alone is not proof of CAMK2A specificity (HPA: tissue IHC). |
| Molecular features | UniProt lists isoforms A and B, nine modified residues, and no transmembrane segment or signal peptide (UniProt Q9UQM7). The supplied records do not map antibody epitopes or establish how isoforms or phosphorylation alter this IHC signal (UniProt Q9UQM7; HPA: tissue IHC). |
| IF/ICC Q&A: should membrane or cilium staining be expected? | HPA lists plasma membrane and primary-cilium locations as uncertain and warns of antibodies targeting proteins from multiple genes (HPA: subcellular ICC-IF). Treat those ICC-IF observations as provisional; they do not redefine the supported neuronal and neuropil IHC pattern (HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| CNS positive tissue has no detectable neuronal signal (HPA: High in cortex and caudate). | The run may have insufficient retrieval or ineffective primary or detection reagents (general IHC practice); target-specific fixation sensitivity is unreported in the supplied records (UniProt Q9UQM7; HPA: tissue IHC). | Verify the positive control and detection controls, then review the chosen retrieval conditions and catalog-antibody dilution against its IHC instructions (general IHC practice). |
| The entire section has diffuse brown staining (general IHC practice). | Excess primary reagent, incomplete washing or endogenous enzyme activity can produce broad chromogenic background (general IHC practice). | Compare a no-primary control, check blocking and endogenous-enzyme quenching, and adjust primary dilution or washes within the validated IHC workflow (general IHC practice). |
| Adipocytes or skin fibroblasts stain as strongly as the CNS control (HPA: Not detected in these cells). | The cell pattern may reflect off-target recognition or endogenous detection activity; HPA flags possible detection of proteins from more than one gene (HPA: tissue IHC; general IHC practice). | Confirm cell identity and review a negative detection control. Compare the neuronal and neuropil pattern with the reported positive tissues before interpreting the signal as CAMK2A (HPA: tissue IHC; general IHC practice). |
| Only nuclei appear positive in an otherwise readable CNS section (HPA: selective neuronal and neuropil profile). | The distribution conflicts with UniProt's synaptic and dendritic locations; counterstain or nonspecific chromogen may be mistaken for target signal (UniProt Q9UQM7; general IHC practice). | Inspect the counterstain and no-primary control, then reassess signal in neuronal cell bodies and neuropil using the same scoring criteria across controls (general IHC practice). |
| A glandular section is positive despite an expectation of CNS-only staining (HPA: tissue IHC). | HPA reports High glandular-cell staining in adrenal gland, endometrium, fallopian tube and gallbladder (HPA: tissue IHC). | Record the cell type and compare it with the relevant HPA tissue observation; assess controls and antibody specificity before calling the glandular signal false (HPA: tissue IHC; general IHC practice). |
| A low-level tissue appears negative beside a strong CNS control (HPA: tissue IHC). | HPA lists only Low staining in parathyroid glandular cells, colon peripheral nerve or ganglion, and smooth muscle cells; weak signal can be harder to score (HPA: tissue IHC; general IHC practice). | Score the weak tissue separately from the CNS positive control and use matched negative controls to define background; avoid treating absence of visible weak signal alone as assay failure (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data. Caution, targets protein from more than one gene.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Ovary | Ovarian stroma cells | Not detected | Protein (IHC) | HPA → |
| Seminal vesicle | Glandular cells | Not detected | Protein (IHC) | HPA → |
Use the selected paraffin-section IHC image as a starting point, then assess staining against neuronal distribution and appropriate controls (datasheet M03241; HPA tissue IHC).
Anti-CAMK2A antibodies have IHC images from human and rat paraffin sections and an IF image from human cells (catalog image captions); all five list human, mouse and rat reactivity (catalog applications/reactivity).
M03241 has IHC images from human colon cancer and rat brain; M03241-3 from human and mouse brain and human hepatocellular carcinoma (catalog IHC image captions). A03241-3 has an IHC image from human breast carcinoma, A03241T286 from human brain, and A03241-2 an IF/ICC image from MCF-7 cells (catalog image captions).
Which to pick: For paraffin-section IHC, choose rabbit monoclonal M03241: its images document EDTA retrieval at pH 8.0, 1:50 primary antibody and DAB detection; the fixative is unreported (catalog IHC image captions; catalog clone). For IF/ICC, choose A03241-2 at 5 μg/mL for its MCF-7 cell image and listed IF/ICC applications (catalog IF image caption; catalog applications). For cross-species tissue IHC, consider rabbit monoclonal M03241-3: human, mouse and rat reactivity is listed, while its IHC images show human and mouse tissues; the captions do not report fixation or retrieval (catalog reactivity; catalog IHC image captions).