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- Table of Contents
Plan chromogenic CCT2 IHC in paraffin sections using the cytoplasmic tissue pattern and strong staining in late spermatids as references (HPA tissue IHC). This guide covers fixation consistency, tissue controls, and staining assessment with an IHC-validated antibody.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic; high in late spermatids (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet PB9992) | |
| Positive control | Testis+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across paraffin sections (standard IHC practice; not target-specific) | |
| Caveat | Staining and RNA show medium consistency (HPA tissue IHC) | |
| Regulation | Expression regulation unreported (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope coverage is unspecified (UniProt) |
The catalog antibody’s IHC-P protocol is supplemented by three published CCT2 IHC protocols from paraffin sections (PMC13485502; PMC3691597; PMC12574043).
| Sample | Paraffin-embedded rat gaster tissues; fixative not specified (datasheet PB9992) |
| Fixation | Image fixative and duration unreported (datasheet PB9992); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet PB9992) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9992) |
| Primary antibody | Rabbit anti-CCT2, 0.5-1μg/ml (datasheet PB9992) |
| Primary incubation | Overnight at 4 °C (datasheet PB9992) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9992) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CCT2-positive staining in elongated or late spermatids of testis (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues, most abundant in testis. No signal in the no-primary control. |
CCT2 is a cytoplasmic protein with no transmembrane segment (UniProt P78371: subcellular location; topology). In paraffin-section IHC, expect cytoplasmic staining across many tissues, with the strongest listed signal in elongated or late spermatids in testis (HPA: tissue IHC). HPA rates the tissue profile Enhanced, while noting medium consistency between antibody staining and RNA expression; interpret intensity alongside cell identity and controls (HPA: reliability).
| Cytoplasmic signal in elongated or late spermatids is strong; glandular cells in adrenal gland or breast show moderate signal. | This matches the listed high testis signal and medium glandular-cell signals (HPA: tissue IHC). Compare the stained cells and compartment, rather than treating every cell in a positive tissue as equally positive. |
| Nuclear, sharply membranous or predominantly extracellular staining dominates a section. | That distribution conflicts with CCT2’s cytoplasmic annotation and lack of a transmembrane segment (UniProt P78371: location; topology). Check whether the pattern tracks tissue edges, counterstain or detection background before assigning it to CCT2. |
| Adipocytes, cardiomyocytes or squamous epithelial cells stain strongly while expected positive cells do not. | HPA lists these cell types as not detected in adipose tissue, heart muscle and esophagus or oral mucosa, respectively (HPA: tissue IHC). Consider cross-reactivity or endogenous detection activity; a positive mark in the wrong cell type does not establish target specificity. |
| Color is widespread over stroma, lumina or cells without a clear cytoplasmic boundary. | A diffuse deposit cannot be scored confidently against HPA’s cell-resolved cytoplasmic profile (HPA: tissue IHC). Review the negative control, blocking, washes and detection chemistry as general IHC checks, then reassess the staining in identifiable cells. |
| No signal appears in elongated or late spermatids in a testis section. | These cells are a high-staining reference in HPA’s tissue IHC data (HPA: High in elongated or late spermatids). First verify that they are present and preserved in the section; then review the staining run before concluding that the sample lacks CCT2. |
| Cell and tissue selection | HPA reports cytoplasmic expression in most tissues, but its listed cell levels range from high in testis spermatids to not detected in several cell types (HPA: tissue IHC). Score the named cell population, not the organ as a whole. |
| Antibody evidence | HPA rates tissue IHC Enhanced and lists two rabbit polyclonal antibodies with Enhanced IHC validation, HPA003197 and HPA003198 (HPA: reliability; antibodies). This supports the reference pattern, while its RNA comparison has medium consistency (HPA: reliability description). |
| Subcellular interpretation | Cytoplasmic localization and absence of a transmembrane segment support intracellular staining (UniProt P78371: location; topology). They do not, by themselves, prove that every cytoplasmic deposit is antibody-specific. |
| Isoforms and epitope uncertainty | UniProt lists two CCT2 isoforms and nine modified residues (UniProt P78371: isoforms; modified residues). The supplied record gives no antibody epitope, so it cannot predict isoform-specific staining or an effect of those modifications on detection. |
| IF/ICC Q&A: Where should fluorescence appear? | Mainly in the cytosol; HPA additionally reports signal in the connecting, mid and principal pieces in its subcellular data (HPA: ICC-IF, cytosol supported; additional locations approved). This is an interpretation reference for the separate IF/ICC guide, not an IHC protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| Testis control has no visible spermatid signal. | The high-staining cells may be absent from the viewed area, or the IHC run may have failed; HPA reports high signal specifically in elongated or late spermatids (HPA: tissue IHC). | Confirm those cells on the section, then check the run’s controls and general IHC steps, including retrieval, reagent delivery and detection. Do not infer CCT2 absence from a failed run. |
| Only nuclei or cell borders are strongly colored. | The dominant compartment conflicts with the cytoplasmic CCT2 annotation (UniProt P78371: location; topology). Counterstain, edge deposits or nonspecific detection may complicate reading. | Compare the color with the negative control and intact cell morphology; score only a reproducible cell-associated pattern consistent with the HPA reference (HPA: tissue IHC). |
| Strong color appears in HPA-listed negative cell types. | Cross-reactivity or endogenous detection activity is possible when adipocytes, cardiomyocytes or listed squamous epithelial cells stain despite their not-detected HPA entries (HPA: tissue IHC). | Identify the exact cell type, inspect the negative control and review the blocking and detection system before calling the stain CCT2-positive. |
| The entire section has diffuse color. | Diffuse background can obscure the cell-resolved cytoplasmic pattern reported for CCT2 (HPA: tissue IHC). | Review the negative control, washes, blocking and chromogen development as general IHC practice; reassess only after individual stained cells can be distinguished. |
| A medium-level reference tissue looks weak or patchy. | HPA’s medium calls apply to named populations, such as adrenal glandular cells or bone-marrow hematopoietic cells, rather than every cell in those tissues (HPA: tissue IHC). | Locate the named population and compare it with a high-signal testis reference from the same run (HPA: High in elongated or late spermatids). |
| The tissue result and an IF/ICC image seem different. | The datasets describe different preparations and locations: HPA tissue IHC reports cytoplasmic expression, while ICC-IF reports mainly cytosolic signal plus approved sperm-piece locations (HPA: tissue IHC; ICC-IF). | Compare matching cell types and compartments. Use the separate IF/ICC guide for fluorescence-specific design; do not transfer its subcellular image pattern into a paraffin-section scoring rule. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Elongated or late spermatids | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Kidney | Cells in glomeruli | Not detected | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CCT2 staining in paraffin sections by checking retrieval, cytoplasmic localisation, controls, and cell specific scoring.
PB9992 has pictured IHC in paraffin sections of rat and mouse gaster and human testis, plus IF/ICC in U2OS cells (catalog image captions).
PB9992 lists IHC and IF/ICC for human, mouse, and rat, with tissue IHC images in all three species and a U2OS IF/ICC image (catalog applications, reactivity, and image captions). M05524-2 lists IHC and IF/ICC for human, mouse, and rat; no image captions were supplied (catalog applications, reactivity, and image captions).
Which to pick: Choose PB9992 for tissue IHC: its own images show paraffin sections with citrate pH 6 retrieval and a 1 μg/ml primary antibody concentration; the fixative is unreported (PB9992 IHC image captions). Choose PB9992 for IF/ICC because its U2OS image documents that application at 2 μg/ml (PB9992 IF image caption). For work across human, mouse, and rat, both SKUs list reactivity, while PB9992 has tissue IHC images in all three species; M05524-2 is a rabbit monoclonal option with no supplied image captions (catalog reactivity, clone, and image captions).