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Plan CEACAM1 paraffin IHC using intestinal enterocyte microvilli as a positive control (HPA tissue IHC). Assess membranous staining with the catalog antibody at 1:50 (datasheet M00923-2), while accounting for possible staining of protein from more than one gene (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Membranous staining in GI glands and bile canaliculi (HPA tissue IHC) | |
| Staining pattern | Membranous in GI glands, bile canaliculi and salivary ducts (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M00923-2) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining may reflect protein from more than one gene (HPA tissue IHC) | |
| Regulation | Expression regulation is not specified (UniProt) | |
| Isoform / epitope | 11 isoforms; check extracellular versus cytoplasmic epitopes (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet M00923-2) with 3 published CEACAM1 paraffin-section IHC workflows (PMC13312280; PMC3728234; PMC6686173).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet M00923-2) |
| Fixation | Image fixative and duration unreported (datasheet M00923-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M00923-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M00923-2) |
| Primary antibody | Rabbit monoclonal (clone 19C63) anti-CEACAM1, 1:50 (datasheet M00923-2) |
| Primary incubation | Overnight at 4 °C (datasheet M00923-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M00923-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CEACAM1-positive staining in enterocytes - Microvilli of appendix (HPA tissue IHC: High). HPA tissue profile: Membranous expression in a few tissues, most abundant in glandular epithelia of the gastrointestinal tract, bile canaliculi of liver and intercalated ducts of salivary gland. No signal in the no-primary control. |
CEACAM1 is a membrane protein with extracellular and cytoplasmic regions; UniProt places it predominantly on lateral membranes and also at apical membranes and junctions (UniProt P13688 topology and subcellular location). In IHC, expect staining in intestinal enterocytes, especially their microvilli, and at liver bile canaliculi (HPA tissue IHC). HPA rates the tissue profile Enhanced but reports only medium consistency with RNA and cautions that staining may target more than one gene (HPA tissue IHC).
| Crisp enterocyte border staining, strongest at microvilli in colon, rectum or appendix (HPA tissue IHC). | This fits the reported High enterocyte microvillus staining in those tissues (HPA tissue IHC) and the apical, lateral and microvillus membrane locations assigned to CEACAM1 (UniProt P13688 subcellular location). Assess the cell border rather than counting all brown material as specific signal (general IHC practice). |
| Predominantly nuclear or broad, uniform cytoplasmic staining with little membrane definition. | That distribution is atypical for the predominant membrane and junctional pattern (UniProt P13688 subcellular location; HPA tissue IHC). Check morphology and controls before calling it CEACAM1: cytoplasmic vesicle membrane and secreted locations are also annotated, so a limited intracellular signal alone cannot establish an artefact (UniProt P13688 subcellular location). |
| Strong staining in cells listed as undetected, such as adipocytes or bronchial respiratory epithelium (HPA tissue IHC). | Treat this as discordant with those cell specific HPA observations, not proof that the specimen lacks CEACAM1. Cross reactivity or endogenous chromogenic activity are possible explanations (general IHC practice); HPA specifically cautions that its tissue staining may target protein from more than one gene (HPA tissue IHC). |
| A diffuse brown haze extends across tissue and surrounding areas. | A field wide deposit without cell border definition cannot be scored as the reported membranous pattern (HPA tissue IHC; general IHC practice). Examine a reagent control and the distribution of precipitate; background from detection chemistry or incomplete blocking is possible (general IHC practice). |
| No defined signal in colon or rectal enterocyte microvilli (HPA tissue IHC). | The expected High reference signal is absent (HPA tissue IHC). Review the run controls and slide morphology before interpreting the specimen as negative (general IHC practice). HPA's medium RNA to staining consistency and multi gene target caution limit how conclusively a single negative slide can be read (HPA tissue IHC). |
| Membrane domain and epitope position (UniProt P13688 topology). | CEACAM1 spans residues 429–452, with an extracellular region at 35–428 and a cytoplasmic region at 453–526 (UniProt P13688 topology). Without a mapped antibody epitope, the record does not establish which region the stain detects. |
| Isoforms and processing (UniProt P13688). | UniProt lists 11 isoforms and a signal peptide at residues 1–34; the annotated mature chain begins at residue 35 (UniProt P13688 isoforms and processing). Antibody coverage across isoforms or processed forms cannot be inferred without its epitope. |
| Tissue and cell context (HPA tissue IHC). | HPA records High enterocyte microvillus staining in colon, rectum and appendix, Medium in duodenum and small intestine, and Low hepatocyte staining (HPA tissue IHC). Compare like cell types and compartments when judging relative intensity. |
| Antibody evidence (HPA antibodies; HPA tissue IHC). | The listed IHC antibodies have different validation labels: HPA011041 is Supported and CAB002146 is Enhanced (HPA antibodies). The overall tissue profile is Enhanced, with medium RNA to staining consistency and a multi gene target caution (HPA tissue IHC). These labels do not establish specificity for an individual slide. |
| Q: What should IF/ICC show? | A: Membrane localisation is the HPA subcellular summary, while UniProt also lists lateral and apical membranes and junctions (HPA subcellular; UniProt P13688 subcellular location). HPA supplies no ICC/IF image cell line or main location here, so an IF pattern cannot be independently checked against that record (HPA subcellular). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in a reference intestinal section. | The reference expectation is High enterocyte microvillus staining in colon, rectum or appendix (HPA tissue IHC); the cause of its absence is undetermined. | Confirm the intended cells are present, inspect assay controls, and review retrieval and detection settings using the antibody's validated IHC instructions (general IHC practice). Do not infer CEACAM1 specific fixation sensitivity from these sources. |
| Only diffuse cytoplasmic colour appears. | It lacks the predominant membrane pattern (UniProt P13688 subcellular location; HPA tissue IHC), although UniProt also annotates a secretory vesicle membrane location (UniProt P13688). | Check whether any crisp apical or lateral border remains and compare with a reagent control before scoring the signal (general IHC practice). |
| Strong staining appears in an HPA undetected cell type. | Cross reactivity or endogenous detection activity may explain discordant colour (general IHC practice); HPA flags possible detection of protein from more than one gene (HPA tissue IHC). | Check a matched negative control and review cellular morphology and stain distribution; avoid assigning target identity from intensity alone (general IHC practice). |
| Brown deposits obscure epithelial borders. | Diffuse detection background or precipitate may hide the reported membranous pattern (general IHC practice; HPA tissue IHC). | Inspect a reagent control and background outside the target cells; review blocking, washing and chromogen development as general IHC workflow checks (general IHC practice). |
| A liver slide looks faint beside a colon slide. | HPA lists hepatocytes as Low and colon enterocyte microvilli as High; its profile specifically notes liver bile canaliculi (HPA tissue IHC). | Judge the liver's canalicular distribution with its own morphology and controls instead of expecting colon level intensity (HPA tissue IHC; general IHC practice). |
| Two antibodies yield different distributions. | HPA assigns Supported to HPA011041 and Enhanced to CAB002146, while warning that staining may target more than one gene (HPA antibodies; HPA tissue IHC). The reason for a specific discrepancy remains unknown. | Compare membrane localisation and cell types on matched sections, then report antibody identity and the disagreement alongside each result (HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Caution, targets protein from more than one gene.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Enterocytes - Microvilli | High | Protein (IHC) | HPA → |
| Colon | Enterocytes - Microvilli | High | Protein (IHC) | HPA → |
| Rectum | Enterocytes - Microvilli | High | Protein (IHC) | HPA → |
| Duodenum | Enterocytes - Microvilli | Medium | Protein (IHC) | HPA → |
| Kidney | Cells in glomeruli | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CEACAM1 staining in paraffin sections by checking retrieval, membrane localisation, antibody epitope and cell specific controls (datasheet M00923-2; UniProt P13688 topology).
The human-reactive catalog antibody has real IHC data from paraffin-embedded colorectal adenocarcinoma and liver cancer sections (catalog: Human reactivity; M00923-2 IHC captions). IF is listed without an IF image (catalog: applications and image records).
M00923-2 has IHC images from human paraffin-embedded colorectal adenocarcinoma and liver cancer sections (M00923-2 IHC captions). IF/ICC is listed as an application, but no IF image is provided (catalog: M00923-2 applications and image records).
Which to pick: Choose M00923-2 for human paraffin-section IHC: it is a rabbit monoclonal, and its captions document EDTA pH 8.0 retrieval, 1:50 primary dilution, and DAB detection; the fixative is unreported (catalog: M00923-2 host and clone; M00923-2 IHC captions). For IF/ICC, M00923-2 is the listed option with a catalog dilution of 1:50, but no IF image is provided (catalog: M00923-2 applications, dilution and image records). No cross-species option is documented; M00923-2 lists Human reactivity only (catalog: M00923-2 reactivity).