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Use hepatocytes as a positive reference when planning chromogenic CES1 staining in paraffin sections (HPA tissue IHC). The IHC-validated antibody M01741-1 has a recommended concentration of 2–5 µg/mL (datasheet: M01741-1); assess cytoplasmic staining by cell type (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Hepatocyte, gallbladder gland and lung macrophage cytoplasm (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M01741-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Bone marrow+4 more · see all |
| Fixation | Keep fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Score lung macrophages separately from other cells (HPA tissue IHC) | |
| Regulation | Intensity regulation not specified (UniProt) | |
| Isoform / epitope | 3 isoforms; epitope differences are unknown (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: M01741-1) with a published cynomolgus monkey brain IHC protocol (PMC12879735).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet M01741-1) |
| Fixation | Image fixative and duration unreported (datasheet M01741-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M01741-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M01741-1) |
| Primary antibody | Mouse monoclonal (clone 3F10) anti-CES1, 2μg/ml (datasheet M01741-1) |
| Primary incubation | Overnight at 4 °C (datasheet M01741-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M01741-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CES1-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Distinct cytoplasmic expression in liver and gall bladder as well as in lung and subsets of cells in gastrointestinal tract. No signal in the no-primary control. |
CES1 is an endoplasmic reticulum lumen protein without a transmembrane segment; UniProt also reports cytoplasmic and lipid droplet localisation, with movement to droplets upon lipid loading (UniProt P23141 topology and subcellular location). In paraffin IHC, expect predominantly cytoplasmic staining in hepatocytes, gallbladder glandular cells, respiratory epithelium, lung macrophages and selected gastrointestinal endocrine cells (HPA: tissue IHC, Enhanced reliability).
| Strong cytoplasmic staining in hepatocytes, with tissue structure preserved (HPA: liver hepatocytes High; tissue IHC profile). | This is a suitable positive pattern for CES1 IHC (HPA: liver hepatocytes High). Compare cells within the section and the negative reagent control before judging intensity; these comparisons are general IHC practice, not a CES1 staining threshold. |
| Cytoplasmic signal appears in gallbladder glandular cells, bronchial respiratory epithelium or lung macrophages (HPA: each cell population High). | The expected positive cell depends on the tissue (HPA: tissue IHC). In lung, identify macrophages when interpreting a positive result; the HPA High entry names macrophages, whereas the bronchus High entry names respiratory epithelial cells (HPA: tissue IHC). |
| Nuclear-only, crisp membrane-only or widespread extracellular staining dominates the section. | These patterns conflict with the reported endoplasmic reticulum, cytoplasmic and lipid droplet locations and the lack of a transmembrane segment (UniProt P23141 topology and subcellular location). Treat the result as suspect and check detection controls before assigning CES1. |
| Cells listed as undetected stain as strongly as hepatocytes, or nearly every cell in a mixed tissue stains. | This raises concern for cross-reactivity or endogenous detection activity; it does not prove either cause (HPA: liver hepatocytes High; heart muscle cardiomyocytes and bone marrow hematopoietic cells Not detected). Check the exact cell type and controls; whole tissues are not universal negatives (HPA: tissue IHC). |
| A uniform chromogenic haze obscures cell boundaries, or known-positive hepatocytes show no discernible signal. | Haze prevents a reliable localisation call; absent hepatocyte signal leaves the stain unverified (HPA: liver hepatocytes High). In general IHC practice, background and signal failure require separate checks of controls, antibody concentration, retrieval and detection. |
| Which tissue and cell should anchor scoring? | Use liver hepatocytes as a strong positive reference (HPA: hepatocytes High; liver tissue-enriched RNA). Gallbladder glandular cells, bronchial respiratory epithelial cells and lung macrophages are additional High populations (HPA: tissue IHC). Score the listed cells, since a tissue name alone does not specify every cell's CES1 status (HPA: tissue IHC). |
| How much confidence does the tissue pattern carry? | HPA rates tissue IHC reliability Enhanced because antibody staining is highly consistent with RNA expression (HPA: reliability description). HPA012023 and HPA046717 each have Enhanced IHC status (HPA: antibody validation). These ratings support the reference pattern; they do not identify the cause of an unexpected result in an individual section. |
| Can lipid droplets change the expected compartment? | UniProt places CES1 in the endoplasmic reticulum lumen and also reports cytoplasm and lipid droplets, with movement to droplets upon lipid loading (UniProt P23141 subcellular location). Interpret a possible droplet-associated pattern in the sample context; this record supplies no IHC criterion for proving droplet identity. |
| Do processing or isoforms change interpretation? | The precursor has a signal peptide at residues 1–17, and the annotated mature chain spans residues 18–567; three isoforms are listed (UniProt P23141 processing and isoforms). Antibody epitope and isoform coverage are not supplied here, so these annotations cannot explain a particular weak or absent stain. |
| IF/ICC Q: where should CES1 appear? | A: Endoplasmic reticulum localisation is supported by HPA ICC-IF, with images listed for A-549, Hep-G2 and U2OS (HPA: subcellular ICC-IF). This is an IF location reference; the paraffin IHC tissue pattern and its cell-specific scoring come from HPA tissue IHC (HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| No visible staining in hepatocytes used as the positive reference (HPA: liver hepatocytes High). | A failed staining run, unsuitable antibody conditions or weak detection is possible; the supplied records do not establish CES1-specific fixation sensitivity. | In general IHC practice, confirm the positive control and reagent controls, then review retrieval, antibody dilution and detection against the catalog antibody's IHC-P instructions; do not infer a CES1 fixation effect from HPA intensity. |
| Hepatocytes stain, but lung signal is assigned to the wrong cell population. | The HPA lung High call is for macrophages; respiratory epithelial cells are the High population in bronchus (HPA: tissue IHC). | Re-examine cell morphology and tissue region before scoring; compare like cell types across sections (general IHC practice). Report the observed cell type, since HPA's High entries do not imply uniform staining throughout lung. |
| Predominantly nuclear or sharply membrane-restricted staining appears. | That distribution conflicts with the annotated endoplasmic reticulum lumen, cytoplasm and lipid droplet locations and lack of a transmembrane segment (UniProt P23141 topology and subcellular location). | Check a liver positive control and a negative reagent control, then reassess antibody concentration and chromogen deposition (general IHC practice). Do not score compartmentally discordant staining as confirmed CES1. |
| Heart muscle cardiomyocytes or bone marrow hematopoietic cells show strong staining. | Those cell populations are listed as Not detected in HPA tissue IHC; unexpected signal could reflect cross-reactivity or endogenous detection activity, but the pattern alone cannot distinguish them (HPA: tissue IHC). | Check a negative reagent control for detection-related signal and compare an independently validated CES1 stain where available (general IHC practice). Record the specific cells stained rather than calling an entire tissue positive. |
| Brown haze covers cells and connective tissue, obscuring cytoplasmic detail. | Diffuse background can arise from nonspecific reagent binding or detection chemistry (general IHC practice); it cannot be attributed to CES1 expression from appearance alone. | Use a negative reagent control, inspect blocking and washing, and review antibody and detection reagent concentrations (general IHC practice). Re-score only when cell boundaries and cytoplasmic localisation are discernible. |
| Signal is weak in stomach glandular cells or other HPA Low populations. | A Low HPA call predicts less conspicuous staining than the High hepatocyte reference; it is not an assay failure by itself (HPA: stomach glandular cells Low; liver hepatocytes High). | Check hepatocytes in a parallel positive control before changing conditions (HPA: liver hepatocytes High; general IHC practice). Preserve the distinction between a weak expected population and a failed run when reporting the result. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
Troubleshoot CES1 staining in paraffin sections by checking retrieval, cell identity and subcellular pattern against the catalog image and reference expression data.
Anti-CES1 antibodies have paraffin-section IHC images from human and mouse tissues and IF/ICC images from HepG2 cells (catalog: image captions); both list human, mouse and rat reactivity (catalog: reactivity).
M01741-1 has IHC images from human liver cancer, tonsil and prostate cancer tissues and mouse lung, plus an IF/ICC image from HepG2 cells (M01741-1: image captions). A01741-1 has IHC images from mouse kidney and lung, human lung cancer and rat lung, plus an IF/ICC image from HepG2 cells (A01741-1: image captions).
Which to pick: For human tissue IHC, M01741-1 is a mouse monoclonal with paraffin-section images using EDTA retrieval at pH 8 (M01741-1: catalog and IHC captions). For IF/ICC, A01741-1 is a rabbit antibody with a HepG2 fluorescence image; its tissue IHC captions instead use citrate retrieval at pH 6 (A01741-1: catalog and image captions). Both list human, mouse and rat reactivity, with cross-species IHC images available for A01741-1; the captions do not report the tissue fixative (catalog: reactivity; A01741-1: IHC captions).