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- Table of Contents
Plan CES1 staining in paraffin sections using the cytoplasmic tissue pattern observed in hepatocytes and lung macrophages (HPA tissue IHC). Use that cell-level pattern to guide interpretation, and check epitope coverage across the 3 annotated isoforms (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining (HPA tissue IHC) | |
| Staining pattern | Hepatocytes and lung macrophages show cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M01741-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Bone marrow+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image M01741-1) | |
| Caveat | Lung macrophages may complicate epithelial scoring (HPA tissue IHC) | |
| Regulation | Liver-enriched expression (HPA tissue IHC) | |
| Isoform / epitope | 3 isoforms; signal peptide 1–17 is cleaved; verify epitope (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet M01741-1) with published CES1 staining in monkey cortex (PMC12879735) and mouse tissues (PMC9978993).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet M01741-1) |
| Fixation | Image fixative and duration unreported (datasheet M01741-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M01741-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M01741-1) |
| Primary antibody | Mouse monoclonal (clone 3F10) anti-CES1, 2μg/ml (datasheet M01741-1) |
| Primary incubation | Overnight at 4 °C (datasheet M01741-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M01741-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CES1-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Distinct cytoplasmic expression in liver and gall bladder as well as in lung and subsets of cells in gastrointestinal tract. No signal in the no-primary control. |
CES1 should show predominantly cytoplasmic staining in hepatocytes, gallbladder glandular cells, lung macrophages and selected respiratory or gastrointestinal cells (HPA tissue IHC: Enhanced; HPA: High in these cell types). Its main supported IF location is the endoplasmic reticulum (HPA subcellular ICC-IF), consistent with an ER luminal protein lacking a transmembrane segment (UniProt P23141 topology). Interpret focal lipid droplet association in the context of lipid loading (UniProt P23141 subcellular location).
| Strong cytoplasmic chromogen in hepatocytes, with recognizable cell boundaries and little staining outside the expected cells. | This is the clearest positive reference: liver hepatocytes are High, and the tissue IHC profile is Enhanced (HPA tissue IHC). Compare cell type and distribution as well as intensity; color alone cannot identify CES1 (general IHC practice). |
| Cytoplasmic staining in gallbladder glands, lung macrophages or selected respiratory and gastrointestinal cells. | These are plausible additional positives, but staining should follow the named cell population: gallbladder glandular cells, lung macrophages, respiratory epithelial cells and gastrointestinal endocrine cells are High (HPA tissue IHC). A positive gland or immune cell does not imply every adjacent cell should stain (HPA tissue IHC). |
| Predominantly nuclear, sharply membranous or widespread extracellular staining replaces the expected cytoplasmic pattern. | Treat this as a localisation mismatch and investigate artefact or antibody specificity (HPA tissue IHC; UniProt P23141 subcellular location; general IHC practice). CES1 is reported in the ER lumen, cytoplasm and lipid droplets, with no transmembrane segment (UniProt P23141 topology); a nuclear or surface pattern is not the expected positive call. |
| Prominent staining appears in cells recorded as not detected, such as bone marrow hematopoietic cells or heart cardiomyocytes. | Check cell identification and detection controls before calling CES1 positive: these specific populations are Not detected by HPA tissue IHC. Cross-reactivity or endogenous chromogenic activity is possible (general IHC practice); HPA's observation is a reference pattern, not proof that every specimen must be negative. |
| A diffuse haze covers cells and extracellular spaces, or a liver positive control shows no convincing hepatocyte signal. | Haze obscures the cell-specific pattern and may reflect nonspecific binding or detection background (general IHC practice). A blank liver control is discordant with High hepatocyte staining (HPA tissue IHC); review the staining run before interpreting other tissues as CES1-negative. |
| Cell type and tissue | Liver hepatocytes are High, as are gallbladder glandular cells and lung macrophages; gastrointestinal positives are specified endocrine-cell subsets (HPA tissue IHC). Score the relevant cells rather than averaging an entire section (general IHC practice). |
| Compartment and lipid state | ER lumen and cytoplasm are reported locations; CES1 moves from cytoplasm to lipid droplets upon lipid loading (UniProt P23141 subcellular location). Lipid-associated signal can therefore vary with cell state, but that annotation does not predict a particular paraffin-section appearance. |
| Antibody evidence | The HPA tissue profile is Enhanced, with high consistency between staining and RNA expression; HPA012023 and HPA046717 each have Enhanced IHC status (HPA tissue IHC; HPA antibodies). This supports the reference distribution, not every staining condition or a new antibody's specificity. |
| Processing and isoforms | CES1 has a signal peptide at residues 1–17, a mature chain at 18–567, and 3 annotated isoforms (UniProt P23141 processing; isoforms). Epitope coverage cannot be inferred without the antibody's epitope, so do not assign a weak stain to processing or isoform choice alone. |
| IF/ICC comparison | The separate IF/ICC question is: should CES1 fluorescence mark ER? Yes: ER is the supported main ICC-IF location, and HPA046717 has Supported ICC status (HPA subcellular ICC-IF; HPA antibodies). This informs localisation comparisons; it does not establish an IF protocol or an IHC retrieval condition. |
| Situation | Likely cause | Next action |
|---|---|---|
| Liver hepatocytes are blank or unexpectedly faint. | The result conflicts with High hepatocyte staining (HPA tissue IHC); an unsuccessful staining run or insufficient detection is possible (general IHC practice). | Confirm tissue identity and inspect a known-positive liver control. Review the catalog antibody's IHC-P conditions, retrieval, reagent performance and chromogen development as general IHC checks; no CES1-specific retrieval effect is established here. |
| The whole section has brown haze, including spaces between cells. | Diffuse signal can arise from nonspecific binding, residual detection reagent or chromogen background (general IHC practice). It does not match distinct cytoplasmic expression (HPA tissue IHC). | Compare an appropriate no-primary control, review blocking and washes, and shorten excessive chromogen development if indicated (general IHC practice). Reassess only after cell boundaries and the positive-control pattern are readable. |
| Lung shows strong signal in many cells, but macrophages cannot be distinguished. | HPA identifies lung macrophages as High; its profile also describes lung cytoplasmic expression (HPA tissue IHC). Unresolved cell identity prevents a confident cell-specific interpretation. | Use section morphology and an appropriate cell-identification control to determine which cells carry signal (general IHC practice). Report the stained compartment and identified cell population, rather than calling the whole lung uniformly positive. |
| Bone marrow hematopoietic cells stain strongly. | Those cells are Not detected in the supplied HPA tissue IHC record. Cross-reactivity or endogenous detection activity is possible (general IHC practice), but the stain alone cannot distinguish them. | Check the no-primary and detection controls, then compare localisation and cell identity with a positive liver section (general IHC practice; HPA tissue IHC: High in hepatocytes). Treat the finding as unresolved if controls do not explain it. |
| Signal appears chiefly nuclear or along the plasma membrane. | That distribution conflicts with HPA's cytoplasmic tissue profile and the reported ER-luminal, cytoplasmic and lipid-droplet locations (HPA tissue IHC; UniProt P23141 subcellular location). | Recheck morphology, counterstain and control sections; compare a validated antibody's pattern if available (general IHC practice). Do not score the unexpected compartment as CES1 on location alone. |
| IF fluorescence appears punctate while paraffin IHC looks broadly cytoplasmic. | CES1 can associate with lipid droplets after lipid loading, while ER is the supported main ICC-IF location (UniProt P23141 subcellular location; HPA subcellular ICC-IF). Different images need cell-state and compartment context. | Evaluate the puncta against ER and lipid-droplet localisation with suitable reference markers as a general IF interpretation step. Use the separate IF/ICC guide for assay design; this comparison supplies no IF protocol or CES1-specific fixation claim. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
Troubleshoot CES1 staining in paraffin sections by checking retrieval, cell identity, intracellular pattern and controls before comparing chromogenic signal across samples.
Both CES1 antibodies have IHC data from paraffin sections and IF/ICC data from HepG2 cells; catalog reactivity includes human, mouse and rat (catalog images and reactivity).
M01741-1 has IHC images from human liver cancer, tonsil and prostate cancer sections and mouse lung sections, plus IF/ICC data from HepG2 cells (M01741-1 image captions). A01741-1 has IHC images from mouse kidney, human lung cancer, mouse lung and rat lung sections, plus IF/ICC data from HepG2 cells (A01741-1 image captions).
Which to pick: For tissue IHC, M01741-1 is a monoclonal option shown on paraffin sections after EDTA retrieval at pH 8.0; A01741-1 is shown on paraffin sections after citrate retrieval at pH 6 (catalog clone; M01741-1 and A01741-1 IHC captions). For IF/ICC, either SKU has HepG2 cell data, with 5 μg/mL primary antibody used in each caption (catalog IF captions). For cross-species IHC, A01741-1 has pictured human, mouse and rat sections, while M01741-1 has pictured human and mouse sections; both list human, mouse and rat reactivity, and neither IHC caption reports the fixative (catalog IHC captions and reactivity).