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- Table of Contents
Plan CFL2 staining in paraffin sections using skeletal or heart muscle as a high-expression reference (HPA tissue IHC). This guide covers fixation, antibody dilution, chromogenic detection and interpretation of the expected cytoplasmic pattern (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Predominantly cytoplasmic in tissue (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining, most abundant in muscle (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet M04773) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | Bone marrow+4 more · see all |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining has medium concordance with RNA expression (HPA tissue IHC) | |
| Regulation | CFL2b predominates in heart and skeletal muscle (UniProt) | |
| Isoform / epitope | 3 isoforms; check epitope coverage (UniProt) |
Start with the catalog antibody’s IHC-P protocol (datasheet: M04773), then compare published CFL2 staining in colorectal and breast tissues (PMC11443709; PMC3599769).
| Sample | Paraffin-embedded human lung cancer tissues; fixative not specified (datasheet M04773) |
| Fixation | Image fixative and duration unreported (datasheet M04773); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet M04773) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M04773) |
| Primary antibody | Mouse monoclonal (clone 8C13) anti-CFL2, 0.5-1μg/ml (datasheet M04773) |
| Primary incubation | Overnight at 4 °C (datasheet M04773) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M04773) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CFL2-positive staining in granular cells - cytoplasm/membrane of cerebellum (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several tissues, most abundant in muscle tissue. No signal in the no-primary control. |
In paraffin-section IHC, expect CFL2 staining chiefly in the cytoplasm of myocytes and cardiomyocytes; HPA also reports high staining in smooth muscle cells and cerebellar granular cells (HPA tissue IHC: Enhanced; medium consistency with RNA). UniProt places CFL2 in the cytoskeleton and nuclear matrix and reports no transmembrane segment (UniProt Q9Y281). HPA's plasma-membrane, nucleoplasm and cytosol calls come from ICC-IF and should be interpreted in that context (HPA subcellular ICC-IF).
| Strong intracellular staining in heart or skeletal muscle cells, with cytoplasmic detail that follows the cells. | This fits the expected IHC result: HPA reports high staining in cardiomyocytes and skeletal myocytes, and UniProt places CFL2 in the cytoskeleton (HPA tissue IHC; UniProt Q9Y281). Assess which cells stain as well as intensity; a brown field alone cannot establish that the signal comes from muscle cells (general IHC interpretation). |
| Staining is confined to an extracellular rim or tissue spaces, without convincing intracellular staining in muscle cells. | Treat this as a suspect compartment pattern, since UniProt describes cytoskeletal and nuclear-matrix localization and no transmembrane segment (UniProt Q9Y281). HPA's approved plasma-membrane call is from ICC-IF, so it does not by itself validate an extracellular-only chromogenic IHC pattern (HPA subcellular ICC-IF). |
| The strongest signal falls in a cell population reported as undetected, while adjacent expected-positive cells are faint. | Check the cell identity before calling cross-reactivity: HPA reports undetected staining in bone-marrow hematopoietic cells and lung alveolar cells, but its calls are cell-specific rather than declarations that every cell in those tissues is negative (HPA tissue IHC). Endogenous detection activity is another possible cause of a chromogenic signal (general IHC practice). |
| Brown deposit spreads across cells and tissue spaces, obscuring boundaries and preventing cell-level scoring. | Score this as uninterpretable background rather than CFL2 positivity, because the expected IHC finding is cell-associated cytoplasmic staining, most abundant in muscle tissue (HPA tissue IHC). Background can arise from nonspecific reagent binding, incomplete blocking or detection chemistry (general IHC practice); its appearance alone does not identify the cause. |
| No detectable staining appears in an otherwise evaluable heart or skeletal-muscle section. | Investigate the run before concluding that CFL2 is absent: HPA reports high staining in cardiomyocytes and skeletal myocytes (HPA tissue IHC). Inspect section integrity and controls, then check the antibody's IHC-P instructions and detection steps (general IHC practice). HPA does not establish a CFL2-specific fixation or retrieval sensitivity. |
| Tissue and cell selection | Heart cardiomyocytes and skeletal myocytes are high-staining reference cells; smooth muscle cells and cerebellar granular cells are also reported high (HPA tissue IHC). Kidney tubular cells and hepatocytes are reported medium, so weaker staining there can still match the atlas pattern (HPA tissue IHC). Compare named cell populations, not whole organs. |
| Isoform distribution | UniProt reports CFL2b predominantly in skeletal muscle and heart and CFL2a in various tissues (UniProt Q9Y281). This supports tissue-dependent interpretation, but the supplied IHC record does not establish which isoform an antibody detects in a given section; do not assign isoform identity from staining intensity alone. |
| Compartment and membrane interpretation | UniProt places CFL2 in cytoskeleton and nuclear matrix and reports no transmembrane segment (UniProt Q9Y281). HPA tissue IHC describes cytoplasmic expression, while HPA ICC-IF calls plasma membrane the main location with nucleoplasm and cytosol additional locations (HPA tissue IHC; HPA subcellular ICC-IF). Keep the assay-specific observations distinct. |
| Evidence strength | HPA labels tissue IHC reliability Enhanced, with medium consistency between antibody staining and RNA expression data (HPA tissue IHC). Its antibody table lists Enhanced IHC for HPA045599, while HPA077782 and CAB037078 have Approved ICC calls and no listed IHC status (HPA antibodies). Apply those validation labels to their stated assays. |
| Antigen retrieval and fixation | The supplied sources provide no CFL2-specific fixation effect, retrieval condition or epitope location. Use the IHC-validated antibody's documented paraffin-section instructions and assess run controls when optimizing retrieval (general IHC practice). Do not infer a retrieval requirement from UniProt topology, modified residues or HPA tissue intensity (UniProt Q9Y281; HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Heart or skeletal muscle shows no cell-associated signal. | A failed stain or detection step is possible; HPA reports these muscle cells as high-staining, but gives no CFL2-specific fixation explanation (HPA tissue IHC). | Check the section, positive-run control and reagent sequence; then follow the catalog antibody's IHC-P instructions for dilution, retrieval and detection (general IHC practice). Repeat with a controlled change if the run failed. |
| Every tissue compartment has a diffuse brown haze. | Nonspecific binding or excessive detection background may obscure the cell pattern (general IHC practice). HPA's expected tissue profile is cytoplasmic and most abundant in muscle (HPA tissue IHC). | Review blocking, washing and detection development; inspect a no-primary control for reagent-derived background (general IHC practice). Reassess cell-associated staining only after the haze is reduced. |
| An HPA-undetected cell type appears strongly positive. | Cross-reactivity or endogenous chromogenic activity is possible, but cell misidentification can also explain an apparent conflict (general IHC practice; HPA tissue IHC). | Identify the stained cells against morphology, then compare a no-primary control and a separate well-characterized positive tissue (general IHC practice). HPA calls bone-marrow hematopoietic cells undetected; it does not label every bone-marrow structure negative (HPA tissue IHC). |
| Signal is exclusively extracellular or cannot be assigned to intact cells. | That location conflicts with UniProt's intracellular cytoskeleton and nuclear-matrix annotation (UniProt Q9Y281); tissue damage or chromogen deposit can mimic staining (general IHC practice). | Inspect morphology and counterstain, check the no-primary control, and repeat an affected section if needed (general IHC practice). Do not use the ICC-IF plasma-membrane call to justify extracellular-only IHC staining (HPA subcellular ICC-IF). |
| A medium-staining tissue looks weaker than muscle. | The contrast can be expected: HPA reports medium staining in kidney tubular cells and hepatocytes versus high staining in heart and skeletal myocytes (HPA tissue IHC). | Score the relevant cell types within each section and compare them with their own expected HPA levels (HPA tissue IHC). Check the run control before increasing detection intensity, which can raise background (general IHC practice). |
| An IF/ICC image seems to show membrane or nuclear signal that differs from the IHC slide. | HPA ICC-IF approves plasma membrane as the main location and nucleoplasm and cytosol as additional locations; its tissue-IHC summary describes cytoplasmic staining (HPA subcellular ICC-IF; HPA tissue IHC). | Interpret each result against its assay-specific HPA record and cell context (HPA subcellular ICC-IF; HPA tissue IHC). For IF/ICC workflow details, use the separate IF/ICC guide; this section's primary readout is chromogenic paraffin-section IHC. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Granular cells - cytoplasm/membrane | High | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | High | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CFL2 staining in paraffin sections by checking retrieval, cell identity, compartment, and controls before interpreting chromogenic signal.
Anti-CFL2 IHC images cover paraffin sections of human lung cancer and human, mouse, and rat skeletal muscle (M04773 IHC captions); IF images cover U2OS cells (M04773 and RP1107 IF captions).
M04773 has IHC images from human lung cancer and human, mouse, and rat skeletal muscle paraffin sections, plus an IF image from U2OS cells (M04773 image captions). RP1107 has an IF/ICC image from U2OS cells and lists human, mouse, and rat reactivity, but does not list IHC as an application (RP1107 IF caption; catalog: applications and reactivity).
Which to pick: Choose M04773 for chromogenic IHC of paraffin sections: it is a mouse monoclonal antibody with IHC images using citrate pH 6 retrieval and DAB detection; the fixative is unreported (catalog: M04773 clone and applications; M04773 IHC captions). Choose RP1107 for IF/ICC when a rabbit primary is preferred; its U2OS IF image supports that application at 5 μg/ml (catalog: RP1107 host and applications; RP1107 IF caption). For cross-species tissue IHC, M04773 has image evidence in human, mouse, and rat sections, whereas RP1107 has no IHC image or listed IHC application (M04773 IHC captions; catalog: RP1107 applications).