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- Table of Contents
Plan CKAP5 chromogenic IHC in paraffin sections using cytoplasmic staining as the expected tissue pattern (HPA tissue IHC). This guide covers an IHC-validated antibody concentration of 2–5 μg/mL (datasheet A05324) and mitotic spindle localization as a molecular expectation (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in tissue IHC (HPA tissue IHC) | |
| Staining pattern | Widespread cytoplasmic staining, including cortical neurons (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A05324) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Mitotic spindle localization may alter the pattern (UniProt) | |
| Regulation | Elevated in hepatomas and colonic tumors (UniProt) | |
| Isoform / epitope | 3 isoforms; verify epitope coverage for each (UniProt) |
The catalog antibody’s IHC-P protocol uses EDTA pH 8.0 retrieval (datasheet A05324). One published xenograft tumor protocol uses acidic retrieval (PMC10075965).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A05324) |
| Fixation | Image fixative and duration unreported (datasheet A05324); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A05324); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A05324) |
| Primary antibody | Rabbit anti-CKAP5, 2-5μg/ml (datasheet A05324) |
| Primary incubation | Overnight at 4 °C (datasheet A05324) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A05324) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CKAP5-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression. No signal in the no-primary control. |
CKAP5 is a cytoplasmic microtubule protein associated with centrosomes, spindle poles, spindles and kinetochores (UniProt Q14008). In paraffin sections, expect cytoplasmic staining in many cell types; HPA describes ubiquitous cytoplasmic expression and rates its tissue IHC evidence as Supported, with medium consistency between staining and RNA data (HPA tissue IHC). CKAP5 has no transmembrane segment (UniProt Q14008 topology).
| Cytoplasmic staining appears across several tissues, with stronger signal in selected cells. | This fits HPA’s ubiquitous cytoplasmic profile and low tissue RNA specificity (HPA tissue IHC). High staining is reported in adipocytes, cerebral cortex neurons and several glandular cell populations (HPA tissue IHC). Judge intensity within the cell type being examined; ubiquitous expression does not imply equal staining in every cell (HPA tissue IHC). |
| Small focal structures are visible within cytoplasm, especially in dividing cells. | Centrosomal and mitotic structures are biologically plausible: CKAP5 localizes to centrosomes, spindle poles, spindles and kinetochores (UniProt Q14008). HPA supports centrosome localization by ICC-IF; its additional mitotic spindle annotation is uncertain (HPA subcellular). Limited resolution in chromogenic sections can make these structures difficult to distinguish (general IHC practice). |
| Staining is confined to nuclei or outlines cell membranes without convincing cytoplasm. | An exclusive pattern there does not match HPA’s tissue IHC cytoplasmic profile or CKAP5’s lack of a transmembrane segment (HPA tissue IHC; UniProt Q14008 topology). Treat it as suspect and compare with controls. HPA also lists nucleolar and plasma membrane signals in ICC-IF as uncertain, so these observations alone cannot establish specificity (HPA subcellular). |
| One unexpected cell population stains much more strongly than the surrounding tissue. | Check the cell identification and controls before calling cross-reactivity or endogenous detection activity (general IHC practice). HPA reports high staining in colon endothelial cells, bronchial ciliated cell bodies and duodenal glandular cells (HPA tissue IHC). Its profile is broadly cytoplasmic and lists no negative cell population, so an unlisted positive cell is not automatically false (HPA tissue IHC). |
| Color is spread uniformly over cells and surrounding section, obscuring boundaries. | Poorly localized staining is hard to score against the reported cytoplasmic pattern (HPA tissue IHC). Assess a negative reagent control and background outside cells; incomplete blocking, detection background or excess primary antibody can contribute to diffuse signal (general IHC practice). Do not assign a CKAP5 compartment from uniform color alone. |
| Tissue and cell selection | HPA reports High staining in adipocytes, adrenal glandular cells, bronchial ciliated cell bodies, cerebral cortex neurons, cervical and duodenal glandular cells, and colon endothelial cells; endometrial glandular cells are Medium (HPA tissue IHC). These are observed levels, not guaranteed control outcomes in every preparation (HPA tissue IHC). |
| Subcellular and cell-cycle context | CKAP5 participates in microtubule organization and localizes to centrosomes and mitotic spindle structures (UniProt Q14008). HPA’s supported ICC-IF location is the centrosome; basal body and additional locations are uncertain (HPA subcellular). A section with few mitotic cells may offer little opportunity to assess spindle staining (general IHC practice). |
| Antibody evidence | Both listed rabbit polyclonal antibodies, HPA039377 and HPA040375, have Supported IHC status; only HPA040375 has Supported ICC status in the supplied antibody record (HPA antibodies). Validation status supports using the observed pattern as a comparison, but does not establish that every stained structure is specific (HPA antibodies). |
| Molecular form and epitope | UniProt lists three isoforms, one chain spanning residues 1–2032, no signal peptide, no propeptide, no transmembrane segment and no annotated glycosylation sites (UniProt Q14008). Those annotations do not identify the catalog antibody’s epitope or establish isoform-specific staining or a fixation effect (UniProt Q14008). |
| IF/ICC: what pattern should be expected? | In the separate IF/ICC application, centrosome signal is supported; basal body, nucleolar, membrane, spindle and primary cilium annotations have uncertain status (HPA subcellular). UniProt also places CKAP5 at centrosomes, spindle poles, spindles and kinetochores (UniProt Q14008). Interpret those location calls within IF/ICC rather than treating them as required chromogenic IHC features. |
| Situation | Likely cause | Next action |
|---|---|---|
| A high-staining reference tissue gives no visible cell-associated signal. | Target-specific fixation effects are not established by the supplied assay evidence. Verify with a matched IHC source before attributing a result to fixation. | Inspect section integrity and counterstain, confirm the IHC reagent and detection controls, then follow the antibody’s documented IHC-P procedure if available (general IHC practice). Use an HPA High cell population as a reference, without treating its listed level as a guaranteed result (HPA tissue IHC). |
| Only nuclear chromatin or sharp cell borders stain. | This distribution conflicts with the predominant cytoplasmic tissue profile; uncertain ICC-IF nucleolar or membrane annotations do not validate an exclusive IHC pattern (HPA tissue IHC; HPA subcellular). | Review morphology and negative reagent controls, and compare another supported IHC antibody if available (general IHC practice; HPA antibodies). Score CKAP5 only where cell-associated staining is credible against the documented cytoplasmic pattern (HPA tissue IHC). |
| Many unexpected cells are positive. | CKAP5 has low tissue RNA specificity and broadly cytoplasmic tissue staining, while the supplied HPA list contains no negative cell population (HPA tissue IHC). An unexpected cell type alone cannot distinguish true signal from cross-reactivity. | Identify stained cells on the counterstained section and compare their compartment with HPA’s profile; use appropriate reagent controls to assess nonspecific detection (HPA tissue IHC; general IHC practice). |
| The entire section has diffuse color. | Background from staining or detection can obscure the cell-associated cytoplasmic pattern (general IHC practice; HPA tissue IHC). | Check a negative reagent control, wash and blocking performance, and the primary antibody concentration using its documented IHC-P instructions (general IHC practice). Reassess only after cellular boundaries and cytoplasm can be distinguished. |
| Cytoplasm stains, but no centrosomal puncta or spindle structures are apparent. | The HPA tissue IHC profile is cytoplasmic; centrosome support comes from ICC-IF, and mitotic structures depend on cells being in mitosis (HPA tissue IHC; HPA subcellular; UniProt Q14008). Chromogenic section resolution may limit recognition (general IHC practice). | Accept credible cytoplasmic staining as the tissue-level pattern; assess focal structures only where morphology permits (HPA tissue IHC; general IHC practice). Consult the separate IF/ICC application for its supported centrosome localization (HPA subcellular). |
| Signal differs between two IHC antibodies. | Both listed antibodies have Supported IHC status, while HPA describes only medium consistency between staining and RNA data; the supplied record gives no epitope mapping to resolve a difference (HPA antibodies; HPA tissue IHC). | Compare the same cell types and compartments across matched sections, then review each antibody’s documented IHC-P conditions and controls (general IHC practice). Report unresolved differences without assigning them to an isoform or fixation effect (UniProt Q14008; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Ciliated cells (cell body) | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Cervix | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: CKAP5 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
CKAP5 staining is mainly cytoplasmic in tissue sections (HPA tissue IHC); its centrosomal and spindle associations help interpret finer localisation (UniProt Q14008).
A05324 and M05324 have paraffin-section IHC images from human tissues and rat brain; A05324 also has mouse brain IHC (catalog IHC captions). Their IF/ICC images show A431 and HeLa cells, respectively (catalog IF captions).
A05324 has IHC images from human liver and prostate cancer tissue and mouse and rat brain, plus an IF/ICC image from A431 cells (A05324 image captions). M05324 has IHC images from human liver, rectal and renal cancer tissue and rat brain, plus an IF/ICC image from HeLa cells (M05324 image captions).
Which to pick: For paraffin-section IHC across human, mouse and rat samples, choose A05324: its own IHC captions show all three species, while M05324’s show human and rat tissue (catalog IHC captions). For IF/ICC, A05324 is a rabbit antibody imaged in A431 cells, while M05324 is a mouse monoclonal antibody, clone 3C13, imaged in HeLa cells (catalog host, clone and IF captions). Both IHC captions describe paraffin sections, but neither reports the fixative (catalog IHC captions).