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- Table of Contents
Plan paraffin-section COL4A3 IHC around cytoplasmic staining and extracellular positivity (HPA tissue IHC). The catalog antibody A01755-3 has an IHC-P range of 2–5 μg/ml (datasheet A01755-3).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and extracellular tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining with extracellular positivity in several tissues (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01755-3) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01755-3) | |
| Caveat | Secreted COL4A3 may stain beyond its producing cells (UniProt) | |
| Regulation | Staining intensity varies by tissue (HPA tissue IHC) | |
| Isoform / epitope | 5 isoforms; processed tumstatin makes epitope location relevant (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A01755-3) is followed by published COL4A3 protocols for lung adenocarcinoma and mouse inner ear sections (PMC13452252; PMC7619435).
| Sample | Paraffin-embedded human gastric cancer tissue; fixative not specified (datasheet A01755-3) |
| Fixation | Image fixative and duration unreported (datasheet A01755-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01755-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01755-3) |
| Primary antibody | Rabbit anti-COL4A3, 2-5 μg/ml (datasheet A01755-3) |
| Primary incubation | Overnight at 4 °C (datasheet A01755-3) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01755-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | COL4A3-positive staining in glandular cells of appendix (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression and extracellular positivity in several tissues. No signal in the no-primary control. |
COL4A3 is a secreted, non-transmembrane collagen of extracellular basement membranes, including the glomerular basement membrane (UniProt Q01955: location and topology). In tissue IHC, HPA reports cytoplasmic expression and extracellular positivity across several tissues, with medium staining in specified epithelial and trophoblastic cells (HPA tissue IHC: Approved; tissue profile). Interpret cellular staining alongside the extracellular pattern and tissue context.
| Extracellular staining follows basement membrane structures, with cytoplasmic staining in cells represented among HPA positives. | This fits COL4A3's matrix location (UniProt Q01955: location) and HPA's reported cytoplasmic and extracellular tissue pattern (HPA tissue IHC: Approved). HPA lists medium staining in appendix glandular cells, for example; it does not assign every listed tissue a compartment-specific pattern (HPA tissue IHC: appendix and profile). |
| Strong nuclear staining dominates while the expected extracellular and cytoplasmic patterns are absent. | Nuclear dominance conflicts with the reported tissue pattern and secreted protein location (HPA tissue IHC: profile; UniProt Q01955: location). Treat it as a possible artefact until a known-positive section, omission control, and staining workflow have been checked (standard IHC practice). |
| Strong staining appears in adipocytes or adrenal glandular cells. | Those cells are listed as not detected, so prominent cellular signal needs scrutiny for cross-reactivity or endogenous detection activity (HPA tissue IHC: adipose tissue and adrenal gland; standard IHC practice). Their cell-level negatives do not establish that every basement membrane in those tissues lacks COL4A3 (HPA tissue IHC: listed cell types). |
| A broad brown haze covers cells and stroma without a discernible anatomical pattern. | The haze cannot be confidently assigned to COL4A3's reported cytoplasmic and extracellular distribution (HPA tissue IHC: profile). Uneven reagent deposition, inadequate washing, or endogenous detection activity are general IHC possibilities; compare controls before scoring it as positive (standard IHC practice). |
| No staining appears in a well-preserved appendix glandular-cell control. | HPA reports medium staining in those cells, making complete absence a reason to inspect assay performance (HPA tissue IHC: appendix glandular cells, Medium). A negative result alone cannot identify whether retrieval, antibody application, detection, or specimen quality failed (standard IHC practice). |
| Protein location and processing | COL4A3 has a signal peptide at residues 1–28 and no transmembrane segment; the chain spans residues 29–1670 (UniProt Q01955: processing and topology). A cytoplasmic IHC signal can coexist with extracellular deposition, as HPA reports both, but the record does not establish the fraction retained within cells (HPA tissue IHC: profile). |
| Antibody validation | The listed rabbit polyclonal HPA042064 has IHC status Approved (HPA antibodies: HPA042064). HPA's tissue reliability is also Approved; neither label here establishes that every specimen or unexpected cell-level signal is specific (HPA tissue IHC: reliability; HPA antibodies: HPA042064). Use appropriate controls when interpreting exceptions (standard IHC practice). |
| Tissue and isoform context | Five isoforms are listed, and UniProt reports different expression across tissues and studies (UniProt Q01955: isoforms and tissue specificity). For example, UniProt reports conflicting kidney comparisons with COL4A4 and differing pancreatic findings; avoid turning any single tissue or study into a universal intensity threshold (UniProt Q01955: tissue specificity). |
| Epitope coverage | UniProt places the collagen IV NC1 domain at residues 1445–1669 and identifies tumstatin at 1426–1670 (UniProt Q01955: domains and processing). The supplied antibody record gives no epitope location, so it cannot establish which forms this assay recognizes or whether a particular processing event changes staining (HPA antibodies: HPA042064). |
| IF/ICC Q&A: Can intracellular COL4A3 staining be expected? | Yes: HPA reports mainly vesicular localisation, with additional endoplasmic reticulum localisation, in its ICC-IF record; images are listed for HeLa and U2OS (HPA subcellular: approved locations and image cell lines). This answers localisation for IF/ICC; it does not supply an IF protocol or override tissue IHC interpretation (HPA subcellular; HPA tissue IHC: profile). |
| Situation | Likely cause | Next action |
|---|---|---|
| The positive-control appendix lacks detectable glandular-cell staining. | HPA records medium staining in appendix glandular cells; the absent signal could reflect an assay or specimen problem, but the record does not identify a target-specific cause (HPA tissue IHC: appendix, Medium). | Check section integrity, antibody application, retrieval, detection reagents, and the positive-control run before interpreting study samples (standard IHC practice). Do not assume a COL4A3-specific fixation effect; none is supplied here. |
| The slide shows diffuse brown haze with little anatomical detail. | This differs from interpretable cytoplasmic or extracellular positivity (HPA tissue IHC: profile). Background may arise from insufficient washing or endogenous detection activity in a chromogenic assay (standard IHC practice). | Review the no-primary control, wash steps, blocking, and detection chemistry; score only signal that resolves into a reproducible tissue pattern (standard IHC practice). |
| Nuclei stain strongly across multiple tissues. | Dominant nuclear staining is discordant with extracellular COL4A3 and HPA's tissue IHC profile (UniProt Q01955: location; HPA tissue IHC: profile). The appearance alone cannot distinguish nonspecific binding from a detection problem (standard IHC practice). | Compare a known-positive section and omission control in the same run, then review reagent concentration and detection background before assigning specificity (standard IHC practice). |
| Adipocytes show strong cellular staining. | HPA lists adipocytes in adipose tissue as not detected, so strong cellular signal is unexpected; this cell-level observation says nothing definitive about nearby basement membranes (HPA tissue IHC: adipose tissue). | Check whether signal belongs to adipocytes or adjacent extracellular structures, then compare the omission control and an HPA-listed positive cell population (HPA tissue IHC: profile and positive list; standard IHC practice). |
| A kidney section gives a weaker or different pattern than anticipated. | UniProt places COL4A3 in glomerular and tubular basement membranes but reports differing kidney expression comparisons across studies; this payload gives no HPA kidney IHC intensity grade (UniProt Q01955: location and tissue specificity; HPA tissue IHC: supplied list). | Judge anatomical localisation and run quality before using intensity alone as a failure criterion; confirm the assay against an HPA-listed medium-positive tissue where available (UniProt Q01955: location; HPA tissue IHC: positive list; standard IHC practice). |
| Cellular staining is present but extracellular staining is difficult to resolve. | HPA reports both cytoplasmic and extracellular positivity across tissues without specifying their proportions in each listed cell type (HPA tissue IHC: profile). Weak anatomical detail or excess background can hinder compartment assignment (standard IHC practice). | Review morphology and counterstain, compare with the omission control, and record cellular and extracellular staining separately; avoid inferring absent COL4A3 solely from an unresolved extracellular pattern (HPA tissue IHC: profile; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | Medium | Protein (IHC) | HPA → |
| Placenta | Trophoblastic cells | Medium | Protein (IHC) | HPA → |
| Skin | Keratinocytes | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot COL4A3 staining in paraffin section chromogenic IHC, using the catalog antibody’s documented workflow and compartment aware controls.
Both antibodies have IHC images from human paraffin sections (catalog: A01755-1, A01755-3); A01755-1 also has an IF image from COS7 cells (catalog: A01755-1 IF image caption).
A01755-3 has IHC images from human gastric, rectal, renal and skin cancer paraffin sections (A01755-3 IHC image captions). A01755-1 has an IHC image from a human brain paraffin section and an IF image from COS7 cells (A01755-1 image captions).
Which to pick: For tissue IHC, choose A01755-3 when its documented workflow fits: the human gastric cancer paraffin section used EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody (A01755-3 IHC image caption). For IF/ICC planning, choose A01755-1 because IF is listed and shown in COS7 cells; ICC is not separately listed (A01755-1 applications and IF image caption). A01755-1 also lists Human and Mouse reactivity, while A01755-3 lists Human and is polyclonal (catalog: reactivity; A01755-3 dilution_raw); neither IHC caption reports the fixative (A01755-1 and A01755-3 IHC image captions).