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- Table of Contents
Plan CREBBP paraffin IHC around widespread nuclear staining (HPA tissue IHC) and the catalog antibody’s 1:200–1:1000 IHC range (datasheet: M00205-1). Use colon glandular cells as a high-staining reference (HPA tissue IHC), and score cytoplasmic signal separately because UV damage can relocalize CREBBP (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear in tissue (HPA tissue IHC); cytoplasm annotated (UniProt) | |
| Staining pattern | Widespread nuclear staining across tissue cell types (HPA tissue IHC) | |
| Antigen retrieval | Tris-EDTA pH 9.0 HIER, 95–98 °C, 20 min (rule: nuclear antigen) | |
| Positive control | Cerebellum+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | UV damage can shift CREBBP to the cytoplasm (UniProt) | |
| Regulation | Tissue regulation is unannotated (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope differences unspecified (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet) with a published CREBBP IHC protocol in human bladder cancer tissue (PMC4411067).
| Sample | Paraffin-embedded human tonsil carcinoma tissue; fixative not specified (datasheet A00205-3) |
| Fixation | Image fixative and duration unreported (datasheet A00205-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in Tris-EDTA buffer, pH 9.0, 20 min at 95–98 °C (standard rule: nuclear antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-CREBBP, 1:50-1:200 (datasheet A00205-3) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CREBBP-positive staining in cells in granular layer of cerebellum (HPA tissue IHC: High). HPA tissue profile: Ubiquitous nuclear expression. No signal in the no-primary control. |
CREBBP should show predominantly nuclear staining across many cell types in paraffin section IHC; HPA describes a ubiquitous nuclear pattern with Supported reliability and low tissue RNA specificity (HPA: tissue IHC). Its nuclear localization fits its transcriptional coactivator function, although UniProt also records cytoplasmic localization and context dependent movement between compartments (UniProt Q92793: function; subcellular location). CREBBP has no transmembrane segment (UniProt Q92793: topology).
| Nuclear staining in colon glandular cells or cervical squamous epithelial cells. | This matches cell types scored High by HPA (HPA: colon and cervix tissue IHC). Compare nuclei with the counterstain, and assess intensity within the intended cell population rather than treating every cell in a section as equally positive (standard IHC practice). |
| Predominantly membranous staining, or cytoplasmic staining without a convincing nuclear pattern. | Treat this as discordant with the usual tissue IHC pattern and investigate artefact (HPA: ubiquitous nuclear expression; standard IHC practice). Cytoplasmic CREBBP is documented, including after UV damage, so compartment alone cannot prove that an individual signal is false (UniProt Q92793: subcellular location). |
| Strong staining confined to an unexpected cell population while expected nuclei remain unstained. | Consider cross-reactivity or endogenous chromogenic activity and examine controls (standard IHC practice). Tissue context matters: HPA reports High staining in endometrial stromal cells as well as in several epithelial populations, so stromal staining is not inherently anomalous (HPA: tissue IHC). |
| Diffuse color over nuclei, cytoplasm, and surrounding tissue. | A poorly bounded signal is hard to score as CREBBP; assess background with appropriate staining controls (standard IHC practice). HPA's supported tissue result describes nuclear expression and does not validate diffuse section-wide color as a target pattern (HPA: tissue IHC). |
| No nuclear signal in a section expected to provide a strong positive comparison. | First check the assay and tissue control before interpreting absence of CREBBP (standard IHC practice). HPA scores cerebellar granular-layer cells and colon glandular cells High, making them documented comparison populations if present in the study material (HPA: tissue IHC). |
| Tissue and cell population | HPA calls tissue IHC expression ubiquitously nuclear but scores particular populations differently: colon glandular cells are High, while skeletal-muscle myocytes and adipocytes are low (HPA: tissue IHC). Interpret intensity against the named cell population, not the tissue label alone (standard IHC practice). |
| Low-staining comparisons | Glial cells in hippocampus, soft-tissue fibroblasts, and bone-marrow hematopoietic cells are listed as low, not negative (HPA: tissue IHC). Weak staining there cannot by itself establish assay failure or specificity (HPA: tissue IHC; standard IHC practice). |
| Compartment and cell state | Nucleoplasm and nuclear bodies are enhanced locations in HPA ICC-IF (HPA: subcellular ICC-IF). UniProt records cytoplasmic localization and context dependent nuclear–cytoplasmic movement (UniProt Q92793: subcellular location). Use the tissue IHC nuclear pattern as the main paraffin-section comparison (HPA: tissue IHC). |
| Antibody evidence | HPA lists Supported IHC staining for HPA055861 and CAB004212 (HPA: antibodies). Its overall tissue IHC reliability is Supported because staining agrees well with RNA expression (HPA: tissue IHC). These summaries support pattern comparison but do not specify performance for every staining condition (standard IHC practice). |
| Isoforms and epitope coverage | UniProt lists 2 CREBBP isoforms and a KIX region, bromodomain, and HAT region (UniProt Q92793: isoforms; domains). The supplied sources do not locate an IHC antibody's epitope, so isoform coverage cannot be inferred from these domain annotations (UniProt Q92793: isoforms; HPA: antibodies). |
| IF/ICC question: what should appear? | Nucleoplasmic and nuclear-body signal is the HPA ICC-IF expectation (HPA: subcellular ICC-IF). That imaging result helps interpret localization, but it is a separate application from chromogenic paraffin-section IHC (HPA: subcellular ICC-IF; tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Known High population shows no nuclear staining (HPA: tissue IHC). | The tissue IHC expectation and observed result disagree; a workflow failure is possible (HPA: tissue IHC; standard IHC practice). | Check section integrity, antigen retrieval, primary-antibody application, detection reagents, and a concurrently stained positive control before scoring the sample negative (standard IHC practice). No CREBBP-specific retrieval condition or fixation sensitivity is established here (HPA: tissue IHC; UniProt Q92793). |
| Signal is mostly membranous. | A membrane-dominant pattern conflicts with HPA's nuclear tissue pattern and CREBBP's lack of a transmembrane segment (HPA: tissue IHC; UniProt Q92793: topology). | Compare with the counterstain and controls; check whether color follows tissue edges or deposits outside cells, then repeat the assay if the pattern persists (standard IHC practice). |
| Unexpected cells stain strongly, but expected nuclei do not. | Cross-reactivity or endogenous detection activity is possible; some stromal populations are genuine high-staining exceptions (standard IHC practice; HPA: endometrial stroma). | Identify the cells morphologically, compare their HPA population annotation, and inspect appropriate primary-omission and detection controls before attributing signal to CREBBP (HPA: tissue IHC; standard IHC practice). |
| Background obscures nuclear boundaries. | Nonspecific binding or chromogenic detection background may interfere with interpretation (standard IHC practice). | Review blocking, washing, primary-antibody concentration, and detection controls; score only nuclei whose boundaries and cell identity can be judged (standard IHC practice). |
| A low-staining population appears faint or negative. | HPA lists several populations as low rather than negative, so faint signal may fall near the assay's detection limit (HPA: tissue IHC; standard IHC practice). | Compare it with a documented High population stained in the same run, and avoid calling CREBBP absent solely from a weak low-population result (HPA: tissue IHC; standard IHC practice). |
| Cytoplasmic color accompanies nuclear staining. | UniProt allows cytoplasmic CREBBP and describes context dependent redistribution, while HPA's ordinary tissue IHC profile is nuclear (UniProt Q92793: subcellular location; HPA: tissue IHC). | Record nuclear and cytoplasmic components separately, assess whether the cytoplasmic color is cell bounded, and use controls before interpreting redistribution (standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Cells in granular layer | High | Protein (IHC) | HPA → |
| Cervix | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | High | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: CREBBP is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot CREBBP staining by checking retrieval, nuclear localisation, controls and scoring before interpreting changes in signal.
Three anti-CREBBP antibodies list IHC and IF applications and human, mouse, and rat reactivity; the supplied images show human and mouse IHC and HeLa IF (catalog applications/reactivity; image captions).
A00205-3 has IHC images of paraffin-embedded human tonsil and lung carcinoma; A00205-1 has a paraffin-embedded human lung carcinoma IHC image and a HeLa IF image (IHC/IF image captions). M00205-1 has IHC images of human pancreas and mouse colon; all three list human, mouse, and rat reactivity (IHC image captions; catalog reactivity).
Which to pick: For paraffin-section IHC, consider A00205-3: its own human tonsil and lung carcinoma captions specify paraffin embedding and a 1:50 dilution, but do not report the fixative (A00205-3 IHC image captions). For IF/ICC, consider A00205-1 because its own HeLa IF image includes a peptide-blocked comparison; its IHC caption describes paraffin-embedded human lung carcinoma, with fixative unreported (A00205-1 IF and IHC image captions). For human and mouse tissue IHC, M00205-1 offers a monoclonal option with images from both species; rat reactivity is listed for all three SKUs, without a supplied rat IHC image (M00205-1 catalog description and IHC image captions; catalog reactivity and IHC image captions).