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- Table of Contents
Plan chromogenic CTNND1 IHC in paraffin sections using the observed cytoplasmic and membranous tissue pattern (HPA tissue IHC). Compare matched sections with consistent fixation and assess membrane and cytoplasmic staining separately, since CDH1 enhances membrane localization (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous in most tissues (HPA tissue IHC) | |
| Staining pattern | Most tissues show cytoplasmic and membranous staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A02333-3) | |
| Positive control | Placenta+4 more · see all | |
| Negative control | Caudate+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A02333-3) | |
| Caveat | CDH1 can enhance membrane localization (UniProt) | |
| Regulation | No staining-intensity regulator established (UniProt) | |
| Isoform / epitope | 32 isoforms; epitope coverage depends on splice region (UniProt) |
The catalog antibody’s IHC-P protocol is followed by published CTNND1 staining methods for renal allograft biopsies (PMC10464146) and lung cancer tissue microarrays (PMC10758022).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A02333-3) |
| Fixation | Image fixative and duration unreported (datasheet A02333-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A02333-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02333-3) |
| Primary antibody | Rabbit anti-CTNND1, 2-5 μg/ml (datasheet A02333-3) |
| Primary incubation | Overnight at 4 °C (datasheet A02333-3) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02333-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | CTNND1-positive staining in cytotrophoblasts of placenta (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and membranous expression in most tissues. No signal in the no-primary control. |
CTNND1 is expected mainly at cell membranes and cell–cell junctions, with cytoplasmic staining in many tissues; nuclear localization is also reported (UniProt O60716; HPA tissue IHC). Placental cytotrophoblasts and testicular Sertoli cells are strong reference populations (HPA: High). HPA rates its tissue IHC profile Enhanced, while noting medium consistency between staining and RNA expression (HPA tissue IHC). CTNND1 has no transmembrane segment (UniProt O60716 topology).
| Crisp staining outlines adjacent positive cells, with some cytoplasmic signal. | This fits the reported cell-junction and cytoplasmic localization (UniProt O60716) and HPA's cytoplasmic and membranous tissue profile (HPA tissue IHC). Judge signal in the identified cell population, since the same tissue can contain cells with different staining levels (HPA tissue IHC). |
| Staining is predominantly nuclear, with little junctional or cytoplasmic signal. | Nuclear localization is possible, and interaction with GLIS2 can promote nuclear translocation (UniProt O60716). A nuclear-only slide is less typical than the HPA tissue profile; check morphology, controls and detection background before calling it specific CTNND1 staining (HPA tissue IHC; standard IHC practice). |
| Strong staining appears in a cell population HPA reports as not detected. | For example, HPA reports no detection in caudate glial cells or spleen red-pulp cells (HPA tissue IHC). Confirm the cell identity and compare controls; cross-reactivity or endogenous detection activity are possible technical causes (standard IHC practice). HPA's observation is not proof that every specimen must be negative. |
| Color spreads across the section without clear cell boundaries or a consistent cell population. | A diffuse deposit cannot establish the junctional pattern expected from UniProt or the membranous and cytoplasmic pattern reported by HPA (UniProt O60716; HPA tissue IHC). Evaluate background with an appropriate negative reagent control, then review blocking, washes and detection conditions (standard IHC practice). |
| Placental cytotrophoblasts or testicular Sertoli cells show no convincing signal. | Both are reported as High by HPA, so absent staining raises a technical concern before it supports a biological absence claim (HPA tissue IHC). Check that the expected cells are present and assess tissue integrity, antibody conditions and detection controls (standard IHC practice). |
| Tissue and cell population | HPA describes cytoplasmic and membranous expression in most tissues, but its listed populations range from High to not detected (HPA tissue IHC). Score the named cells rather than treating whole-section color as a single result (standard IHC practice). |
| Cell adhesion context | CTNND1 participates in cadherin-associated adhesion and is detected at cell–cell contacts; CDH1 enhances its membrane localization (UniProt O60716). A junctional pattern has biological support, while cytoplasmic staining also remains compatible with the HPA tissue profile (HPA tissue IHC). |
| Redistribution and nuclear signal | NANOS1 can move CTNND1 from cell contacts to cytoplasm, and GLIS2 interaction can promote nuclear translocation by similarity (UniProt O60716). These annotations warrant context-sensitive interpretation; they do not establish that nuclear staining is the dominant pattern in the supplied HPA tissue IHC data. |
| Isoform diversity | UniProt lists 32 CTNND1 isoforms and reports longer isoform 1A primarily in melanocytes and melanoma cells, versus shorter isoforms, especially 3A, in keratinocytes (UniProt O60716). The supplied evidence does not map the IHC antibody's epitope to these isoforms, so staining alone cannot identify one. |
| Protein topology and processing | CTNND1 has no annotated signal peptide, propeptide, transmembrane segment or glycosylation site; its annotated chain spans residues 1–968 (UniProt O60716). These facts support an intracellular junction-associated interpretation, but do not predict antigen retrieval needs or fixation sensitivity. |
| Strength of antibody evidence | HPA records IHC Enhanced for HPA015954 and IHC Supported for HPA015955 and CAB003837; its tissue profile is Enhanced with medium staining–RNA consistency (HPA antibodies; HPA tissue IHC). Apply these grades to the documented antibodies and observations, not automatically to an unlisted catalog antibody. |
| IF/ICC pattern? | HPA reports mainly plasma-membrane localization, with an additional basal-body location in ICC-IF images (HPA subcellular). This is a localization cross-check for the separate IF/ICC guide; it does not establish an IHC-P protocol or require visible basal-body staining in paraffin sections. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive cells are blank. | The result conflicts with HPA's High staining in placental cytotrophoblasts or testicular Sertoli cells; a missed target population or a failed staining step is possible (HPA tissue IHC; standard IHC practice). | Confirm those cells on the section, then review the IHC-validated antibody's supplied IHC-P instructions, reagent preparation, detection and a positive control (standard IHC practice). No CTNND1-specific retrieval condition is established by these payloads. |
| All compartments show similar diffuse color. | Nonlocalized deposit may reflect background from antibody or detection reagents (standard IHC practice). It does not resemble HPA's membranous and cytoplasmic tissue pattern (HPA tissue IHC). | Compare a negative reagent control, inspect wash and blocking steps, and assess whether cell boundaries become discernible under the validated staining conditions (standard IHC practice). |
| A nominally negative cell population stains strongly. | Cell misidentification, cross-reactivity or endogenous detection activity are possibilities (standard IHC practice). HPA reports some specific populations as not detected, including cerebellar granular-layer cells and spleen red-pulp cells (HPA tissue IHC). | Recheck tissue morphology and the exact cell population, then compare appropriate negative and detection controls (standard IHC practice). Treat disagreement with HPA as a reason to investigate, not as automatic proof of nonspecificity. |
| Only nuclei stain convincingly. | UniProt includes nuclear CTNND1 localization, but HPA describes the general tissue IHC profile as cytoplasmic and membranous (UniProt O60716; HPA tissue IHC). The supplied data do not establish nuclear dominance for the chosen section. | Review junctional and cytoplasmic signal at higher magnification, check negative controls, and report nuclear staining separately if it persists (standard IHC practice). Avoid calling nuclear signal an artifact solely from its compartment. |
| Junctional staining varies between neighboring cells. | CTNND1 localization is linked to cell–cell contacts and CDH1, while HPA records different staining levels across named cell populations (UniProt O60716; HPA tissue IHC). Variation can therefore merit cell-level review. | Score identifiable populations and their membranous, cytoplasmic and nuclear compartments separately; compare similar cells across the section before interpreting variation as technical failure (standard IHC practice). |
| IF/ICC and IHC-P images appear different. | HPA's ICC-IF summary emphasizes plasma membrane and an additional basal-body location, whereas its tissue IHC summary reports cytoplasmic and membranous staining (HPA subcellular; HPA tissue IHC). The observations come from different preparations. | Use the separate IF/ICC guide for that application. For this IHC-P section, judge staining against the tissue IHC pattern and cell populations; do not infer an IF/ICC protocol from the localization summary (HPA tissue IHC; HPA subcellular). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Placenta | Cytotrophoblasts | High | Protein (IHC) | HPA → |
| Testis | Sertoli cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
| Spleen | Cells in red pulp | Not detected | Protein (IHC) | HPA → |
| Vagina | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot CTNND1 staining in paraffin sections by checking retrieval, compartment-specific signal, cell identity, and scoring against matched controls.
The catalog includes CTNND1 antibodies with IHC images from human, mouse and rat tissues and IF images from human cells (catalog image captions).
A02333-3 has paraffin-section IHC images from human liver cancer, mouse lung and intestine, and rat lung; M02333-2 has paraffin-section IHC images from human breast, colorectal and laryngeal cancers (catalog IHC captions). M02333-4 has IHC images from rat and mouse liver and human cervical and liver cancers; M02333 has an IF image from MCF-7 cells, with IHC listed as an application but no IHC image supplied (catalog image captions; catalog applications).
Which to pick: For paraffin-section IHC with documented processing, choose A02333-3 or mouse monoclonal M02333-2: each caption reports EDTA retrieval at pH 8.0 and an overnight primary incubation at 2 μg/ml; the fixative is unreported (A02333-3 and M02333-2 IHC captions). For IF/ICC, A02333-3 and M02333-2 have cell images and 5 μg/ml primary incubations, while rabbit monoclonal M02333 has an MCF-7 IF image (catalog IF captions). For cross-species tissue IHC, A02333-3 has paraffin-section images from human, mouse and rat samples; M02333-4 also has tissue images across those species, though its captions do not specify processing (catalog IHC captions).