CTSE · Western blot design guide

CTSE Western Blot Planning Guide

Plan a CTSE Western blot around the catalog-observed 42.8 kDa band, image-backed A04874-1 evidence, HPA controls, and verified protocol records.

Evidence assembled July 2026 · For research use; verify linked source records and product datasheet before use

Western blot protocol sheet for CTSE (CTSE): expected band 42.8 kDa, antibody A04874-1, and PMC-cited SDS-PAGE protocol steps

Band Protocols Controls Antibodies

CTSE Western Blot Experimental Design Guide

Expected bands, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.

Must know before running

	Expected band	42.8 kDa
	Observed band	Not reported — verify product WB image
	Gel	12-15%
	Positive control ⓘ	Stomach
	Negative control ⓘ	Adrenal gland

Important caveats

Reasons your observed band may differ from the expected size.

ⓘ	Calculated mass	42.8 kDa
ⓘ	Localization	Endosome
ⓘ	Processing / PTM	Record-dependent
ⓘ	Reactivity	Human / Mouse / Rat

Sample controls for CTSE Western blot

🧪Use Stomach as the first positive-control candidate and Adrenal gland as the HPA Not detected negative candidate.

Positive control: Stomach (High)

Negative control: Adrenal gland (Not detected)

HPA protein score determines control status; other expression data is supporting context only.

HPA tissue expression evidence for CTSE

Comprehensive Human Protein Atlas IHC scoring per tissue. Rows are taken directly from the HPA tissue chart on each tissue page — click any row's HPA link to view the source.

Positive expression · recommended positive controls

Tissue	Cell type	Level	Evidence	Source
Stomach	Reported tissue cells	High	Protein (HPA)	HPA →
Appendix	Reported tissue cells	High	Protein (HPA)	HPA →
Duodenum	Reported tissue cells	High	Protein (HPA)	HPA →
Rectum	Reported tissue cells	High	Protein (HPA)	HPA →

Undetected expression · recommended negative controls

Tissue	Cell type	Level	Evidence	Source
Adrenal gland	Reported tissue cells	Not detected	Protein (HPA)	HPA →
Breast	Reported tissue cells	Not detected	Protein (HPA)	HPA →

Section 1

What Is the Expected CTSE Western Blot Band Size?

Use the product-observed 42.8 kDa band as the primary planning value and retain the UniProt calculated mass as context.

What am I looking at on my blot?
42.8 kDa	Matches the authoritative product WB observation.
42.8 kDa calculated	Use as UniProt context, not as a replacement observed band.
Unexpected additional signal	Do not assign identity without orthogonal positive/negative controls.

💡Expected CTSE appearancePlan around 42.8 kDa and keep the calculated mass as supporting context.

How each factor affects band size
Catalog-observed band	42.8 kDa; use this as the primary experimental expectation.
Calculated mass	42.8 kDa from UniProt P14091; retain as context.
Gel selection	12-15%; shared with the recommended protocol and poster.
Specificity check	Compare the lead HPA positive and negative controls with A04874-1.

Why is my band missing or off?
Situation	Likely cause	Next action
42.8 kDa	Matches the authoritative product WB observation.	Confirm with orthogonal controls and the linked product record.
Additional band	May reflect processing, modification, or non-specific signal.	Run a dilution series and compare positive/negative controls.
Weak signal	Target abundance or transfer may be limiting.	Verify transfer, increase positive-control abundance, and bracket exposure.

Sources: UniProt P14091 Human Protein Atlas product datasheet (A04874-1)

Experiment evidence

Western blot images showing CTSE band

A04874-1 · CTSE — observed 42.8 kDa WB validation

A04874-1 · CTSEObserved 42.8 kDa · product-specific WB image

← swipe / scroll for more images →

Real WB data behind the band-size expectations in this section.

Section 2

Real Curated CTSE Western Blot Protocols

Start with the molecular-weight rule, then compare verified publication-derived conditions.

Recommended Western blot protocol parameters
Sample / lysate	Appendix
Gel %	12-15%
Load	20-30 µg total protein per lane
Transfer	Semi-dry, standard transfer
Membrane	0.45 µm PVDF
Blocking	5% non-fat milk or 5% BSA in TBST
Primary	A04874-1 at datasheet starting dilution
Primary incubation	Overnight at 4 °C with gentle agitation
Secondary	Species-matched HRP conjugate at validated dilution
Wash	3 × 5 min in TBST
Detection	Chemiluminescent substrate
Exposure	Bracket exposures to avoid saturation

Section 4

Advanced CTSE Western Blot Tips

Deeper troubleshooting and optimisation questions for CTSE, answered from its protein features.

Which band should guide the blot?

Use 42.8 kDa, the observation attached to the authoritative A04874-1 WB record.

How should calculated mass be interpreted?

Treat the UniProt calculated mass as context; it does not replace the catalog-observed 42.8 kDa expectation.

Which positive control should I start with?

Start with Stomach, the lead HPA protein-expression candidate.

Which negative control is defensible?

Use Adrenal gland as an orthogonal HPA Not detected candidate.

Which gel should I use?

Use 12-15% consistently across the quick facts, protocol table, and poster.

What transfer method to use for CTSE Western blot?

Use the transfer method in the recommended protocol and verify transfer before blocking.

How should A04874-1 be started?

Start at the linked datasheet condition and run a three-point primary-antibody dilution test.

Which publication-derived protocols can I compare?

Compare only the supplied target-verified records: PMC5460450, PMC3192174, PMC12650638.

Boster reagents

CTSE Western Blot Reagents

Human/Mouse/Rat-reactive CTSE Western blot reagents with authoritative product imagery.

Real WB data Western blot validation image for CTSE using A04874-1; observed band 42.8 kDa

Anti-Cathepsin E/CTSE Antibody Picoband®

Cat # A04874-1

Reactivity: Human, Mouse, Rat

View product →

Only image-backed, WB-validated Human/Mouse/Rat recommendations from the prepared catalog evidence are shown.

Source: prepared picoband-wb product evidence; each card retains its own SKU, URL, observed band, and authoritative WB image.