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- Table of Contents
Plan DCK chromogenic IHC in paraffin sections using tonsil germinal centers as a positive reference (HPA tissue IHC) and 2–5 μg/mL catalog antibody A01655-1 (datasheet A01655-1). Assess nuclear and cytoplasmic staining in immune cells while accounting for presumed off-target staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear and cytoplasmic in a subset of immune cells (HPA tissue IHC) | |
| Staining pattern | Subset of immune cells shows nuclear and cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01655-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01655-1) | |
| Caveat | Presumed off-target staining can complicate scoring (HPA tissue IHC) | |
| Regulation | Lymphoid tissue–enhanced RNA (HPA RNA) | |
| Isoform / epitope | One annotated chain; no isoforms listed (UniProt) |
The catalog antibody protocol uses heat-mediated EDTA pH 8.0 retrieval (datasheet A01655-1). Four published DCK IHC protocols provide additional conditions to compare (PMC4998873; PMC7271117; PMC4819809; PMC3669607).
| Sample | Paraffin-embedded human breast cancer tissue; fixative not specified (datasheet A01655-1) |
| Fixation | Image fixative and duration unreported (datasheet A01655-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01655-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01655-1) |
| Primary antibody | Rabbit anti-DCK, 2-5μg/ml (datasheet A01655-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01655-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01655-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | DCK-positive staining in lymphoid tissue of appendix (HPA tissue IHC: High). HPA tissue profile: Nuclear and cytoplasmic expression in a subset of immune cells. No signal in the no-primary control. |
DCK is annotated as nuclear and has no transmembrane segment (UniProt P27707). In paraffin sections, expect nuclear and sometimes cytoplasmic staining in a subset of immune cells (HPA tissue IHC). Germinal center cells in lymph node and tonsil stain strongly, while hematopoietic cells in bone marrow and cells in splenic white pulp show medium staining (HPA tissue IHC). HPA rates the tissue pattern Enhanced, with medium agreement between staining and RNA data (HPA tissue IHC).
| Strong nuclear staining in germinal center cells, with some cytoplasmic signal in the immune-cell subset (HPA tissue IHC). | This fits the reported tissue pattern; the nuclear component also agrees with DCK’s annotated location (UniProt P27707; HPA tissue IHC). Score the stained cells and their compartments, since the expected pattern is confined to a subset rather than every cell in the section (HPA tissue IHC). |
| Predominantly membranous staining, or a pattern lacking the expected nuclear component (UniProt P27707; HPA tissue IHC). | Treat this as discordant: DCK has no annotated transmembrane segment, and HPA reports nuclear and cytoplasmic tissue staining (UniProt P27707; HPA tissue IHC). Review morphology and detection controls before calling it DCK; localization alone cannot establish the source of an unexpected signal (general IHC practice). |
| Strong staining of adipocytes or respiratory epithelial cells alongside, or instead of, lymphoid cells (HPA tissue IHC). | HPA reports DCK as not detected in adipocytes of adipose tissue and respiratory epithelial cells of bronchus (HPA tissue IHC). Such staining raises concern for cross-reactivity or endogenous chromogenic activity; assess the no-primary control and antibody specificity rather than treating those cells as an expected positive population (general IHC practice). |
| Color spreads diffusely across many cell types or obscures nuclear boundaries (general IHC practice). | This cannot be scored reliably against HPA’s subset-of-immune-cells pattern (HPA tissue IHC). Consider nonspecific antibody binding, excess detection signal, or endogenous enzyme activity, then compare a no-primary control and the section’s morphology (general IHC practice). |
| No convincing signal in lymph node or tonsil germinal center cells (HPA: High in both). | The run has missed an expected positive population, although HPA’s Enhanced rating still includes medium staining-to-RNA consistency and disregarded presumed off-target binding (HPA tissue IHC). Check the positive-control section, primary-antibody instructions, retrieval, and detection system before interpreting a test section as negative (general IHC practice). |
| Compartment reference | UniProt places DCK in the nucleus, while HPA tissue IHC reports nuclear and cytoplasmic staining in a subset of immune cells (UniProt P27707; HPA tissue IHC). Supported nucleoplasmic localization comes from ICC-IF, a separate application; it helps interpret location but is not an IHC-P protocol or an intensity standard (HPA subcellular). |
| Choice of tissue control | Lymph node and tonsil germinal center cells are High; bone marrow hematopoietic cells and splenic white-pulp cells are Medium (HPA tissue IHC). An HPA High population gives a clearer positive-pattern check, while the Medium populations should not be expected to match its intensity (HPA tissue IHC). |
| Antibody validation and limits | HPA062773 has Enhanced IHC validation; HPA059609 has Supported ICC validation and no listed IHC status (HPA antibodies). The tissue profile is rated Enhanced, yet HPA reports medium agreement with RNA and presumed off-target binding that was disregarded; evaluate unexpected staining against these limits (HPA tissue IHC). |
| Topology and processing | DCK is annotated as a single 1–260 chain, without a signal peptide, propeptide, or transmembrane segment (UniProt P27707). These annotations support scrutiny of a membrane-only pattern; they do not predict how paraffin processing or antigen retrieval affects staining (UniProt P27707). |
| Chromogenic detection | Endogenous enzyme activity can produce color independent of primary-antibody binding in chromogenic IHC (general IHC practice). A no-primary control and detection-system checks help distinguish that activity from the cell-restricted DCK pattern reported by HPA (general IHC practice; HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Lymph node or tonsil germinal centers are blank (HPA: High in both). | A missed staining step, incompatible detection, or unsuitable retrieval may explain a failed run; no DCK-specific fixation or retrieval sensitivity is supplied (general IHC practice). | Check that the IHC-validated antibody, detection reagents, and positive-control section were used as intended; optimize retrieval using the antibody instructions and a controlled comparison (general IHC practice). |
| Signal is weak in splenic white pulp or bone marrow hematopoietic cells (HPA: Medium in both). | These populations have lower reported staining than germinal center cells, so weak signal alone does not establish assay failure (HPA tissue IHC). | Compare them with germinal center cells processed in the same run, and judge cell-specific nuclear or cytoplasmic localization before changing conditions (HPA tissue IHC; general IHC practice). |
| Adipocytes or bronchial respiratory epithelial cells stain strongly (HPA: Not detected in both). | The result conflicts with the reported tissue pattern; nonspecific primary binding or endogenous detection activity are possible explanations (HPA tissue IHC; general IHC practice). | Inspect a no-primary control and repeat with an IHC-validated antibody if needed; keep the unexpected cell population separate from the expected positive score (general IHC practice; HPA antibodies). |
| Staining appears only at cell borders or membranes (UniProt P27707 topology). | A membrane-only pattern conflicts with nuclear annotation and the HPA immune-cell staining pattern; localization does not identify the artefact’s source (UniProt P27707; HPA tissue IHC). | Recheck compartment assignment against the counterstain and cell morphology, then compare controls and antibody validation before reporting DCK positivity (general IHC practice; HPA antibodies). |
| Brown color is diffuse, making positive cells hard to identify (general IHC practice). | Excess nonspecific detection or endogenous enzyme activity may obscure HPA’s subset-of-immune-cells pattern (general IHC practice; HPA tissue IHC). | Review the no-primary control, blocking and detection conditions, and counterstained morphology; adjust conditions through controlled comparisons rather than scoring diffuse color as DCK (general IHC practice). |
| ICC-IF looks nucleoplasmic but paraffin IHC is equivocal (HPA subcellular; HPA tissue IHC). | The supported nucleoplasmic finding is from ICC-IF, while the tissue IHC report includes both nuclear and cytoplasmic staining; the listed antibody validation also differs by application (HPA subcellular; HPA tissue IHC; HPA antibodies). | Interpret the paraffin section against the IHC tissue pattern and an IHC-validated antibody; use ICC-IF localization as supporting context, not as an IHC staining requirement (HPA tissue IHC; HPA antibodies). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Lymphoid tissue | High | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | High | Protein (IHC) | HPA → |
| Tonsil | Germinal center cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Spleen | Cells in white pulp | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot DCK staining in paraffin sections by checking retrieval, cellular identity, subcellular pattern, and matched controls before scoring (HPA tissue IHC; HPA subcellular).
Two anti-DCK antibodies have IHC images from human paraffin sections; A01655-1 also has mouse liver IHC data, and M01655 has IF/ICC data in U2OS cells (catalog image captions).
A01655-1 has IHC images from human breast cancer, ovary cancer and tonsil sections, plus mouse liver (A01655-1 image captions). M01655 has an IHC image from human tonsil cancer and an IF/ICC image from U2OS cells (M01655 image captions).
Which to pick: For human tissue IHC, either antibody has a paraffin-section image; M01655 is monoclonal clone 3G10, while A01655-1 is polyclonal (catalog applications and image captions). Choose M01655 for IF/ICC because it lists both applications and has a U2OS IF image; choose A01655-1 for cross-species IHC because it lists human, mouse and rat reactivity and has a mouse liver IHC image (catalog applications, reactivity and image captions). Both IHC captions describe paraffin sections, but neither reports the fixative (catalog IHC image captions).