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- Table of Contents
Plan DLST staining in paraffin sections using liver hepatocytes as a strong reference (HPA tissue IHC). Assess granular cytoplasmic staining and start the catalog antibody at 2–5 μg/ml (HPA tissue IHC; datasheet A05097-1).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm in most tissues (HPA tissue IHC) | |
| Staining pattern | Granular cytoplasmic staining in many cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A05097-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 44 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Salivary and prostate glandular cells show low staining (HPA tissue IHC) | |
| Regulation | Low tissue specificity (HPA tissue RNA) | |
| Isoform / epitope | 2 isoforms; mature chain starts at residue 68; check epitope coverage (UniProt) |
Compare the catalog antibody’s EDTA pH 8.0 IHC-P protocol (datasheet A05097-1) with three published DLST tissue protocols (PMC9905101; PMC11219760; PMC12604326).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A05097-1) |
| Fixation | Image fixative and duration unreported (datasheet A05097-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A05097-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A05097-1) |
| Primary antibody | Rabbit anti-DLST, 2-5 μg/ml (datasheet A05097-1) |
| Primary incubation | Overnight at 4 °C (datasheet A05097-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A05097-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | DLST-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Ubiquitous granular cytoplasmic expression in a majority of tissues. No signal in the no-primary control. |
DLST is mainly mitochondrial, with a small nuclear fraction and no transmembrane segment (UniProt P36957 localization and topology). In paraffin tissue sections, expect granular cytoplasmic staining across many cell types, including hepatocytes and cerebellar Purkinje cells (HPA: ubiquitous granular cytoplasmic expression; High in both cell types). HPA rates the tissue staining profile Supported, citing consistency with RNA expression (HPA: IHC reliability Supported).
| Distinct granular cytoplasmic staining in hepatocytes or Purkinje cells. | This matches the reported tissue pattern and provides a useful positive reference (HPA: granular cytoplasmic profile; High in hepatocytes and Purkinje cells). Judge the granules within intact cells, alongside section morphology, rather than treating any brown deposit as cellular staining (general IHC practice). |
| Predominantly nuclear, membranous, or extracellular chromogen in an IHC section. | Predominantly nuclear or noncellular staining departs from HPA’s granular cytoplasmic tissue profile and warrants an artifact check (HPA: tissue IHC profile). A small nuclear DLST fraction is biologically plausible (UniProt P36957 localization), so isolated nuclear signal is not, by itself, proof of cross-reactivity. A membranous pattern has no support from the supplied topology (UniProt P36957 topology). |
| Strong staining confined to a cell population outside the reported high-expression examples. | Compare its location and morphology with neighboring cells before assigning specificity: HPA reports broad expression, including High staining in germinal center cells and several glandular cell populations (HPA: tissue IHC profile). Unexpected, cell-restricted deposits can reflect cross-reactivity or endogenous detection activity; a no-primary control helps distinguish the latter (general IHC practice). |
| Uniform haze, widespread chromogen deposits, or staining without clear cell boundaries. | This is less consistent with discrete granular cytoplasmic DLST staining (HPA: tissue IHC profile). Assess the no-primary control, blocking, washes, and chromogen development for nonspecific or detection-derived background (general IHC practice). HPA’s Supported reliability describes the reported profile; it does not validate every new staining run (HPA: IHC reliability Supported). |
| No discernible signal in a section expected to provide a positive reference. | Absence of staining in hepatocytes or Purkinje cells conflicts with their reported High levels (HPA: High in hepatocytes and Purkinje cells). Check tissue preservation, antigen retrieval, antibody application, detection reagents, and controls as general IHC troubleshooting steps (general IHC practice). The supplied sources do not establish a DLST-specific fixation or retrieval failure mechanism. |
| Cellular compartment and readout | Tissue IHC shows mainly granular cytoplasmic staining (HPA: tissue IHC profile), while ICC-IF reports supported nucleoplasmic localization and uncertain mitochondrial and cytosolic localization (HPA: subcellular ICC-IF). Interpret these as assay-specific observations; UniProt also records mainly mitochondrial DLST with a small nuclear fraction (UniProt P36957 localization). |
| Choice of tissue reference | HPA reports High staining in hepatocytes, Purkinje cells, and several other listed populations, but Low staining in salivary glandular cells, prostate glandular cells, smooth muscle cells, and fibroblasts in soft tissue (HPA: tissue IHC levels). Low is a weaker comparator, not a validated negative control; HPA lists no negative tissue here (HPA: negative tissue list empty). |
| Antibody and isoform coverage | The listed antibody HPA003010 has Supported IHC status (HPA: antibody validation). UniProt records two isoforms and a mature chain spanning residues 68–453 (UniProt P36957 isoforms and processing). The payload gives no epitope position or isoform coverage, so staining cannot be assigned to a particular isoform or processing state. |
| Detection chemistry | Endogenous enzyme activity or nonspecific chromogen deposition can imitate cellular staining in chromogenic IHC (general IHC practice). A matched no-primary control tests detection-derived signal in the same tissue (general IHC practice). This is a general assay consideration, not evidence that DLST itself has a particular endogenous detection artifact. |
| Situation | Likely cause | Next action |
|---|---|---|
| Granular staining is faint in an HPA High reference tissue. | A weak run signal is possible, but HPA’s reported intensity does not specify a cause in your section (HPA: High in hepatocytes or Purkinje cells). | Review section quality, retrieval and detection controls, then adjust antibody dilution or development within the applicable IHC workflow (general IHC practice). Do not infer DLST-specific fixation sensitivity from the HPA intensity rating. |
| Chromogen is strongest at tissue edges or across empty spaces. | Edge effects or nonspecific deposits can occur during section staining (general IHC practice); they do not match the reported cellular granules (HPA: tissue IHC profile). | Inspect section adhesion and reagent coverage, repeat with even incubation and washing, and compare with a no-primary control (general IHC practice). |
| Nuclei dominate an otherwise weak IHC stain. | This differs from the reported granular cytoplasmic IHC profile (HPA: tissue IHC profile), although UniProt recognizes a small nuclear fraction (UniProt P36957 localization). | Check chromogen distribution, counterstain, and control sections before calling nuclear DLST; report a reproducible nuclear component separately from the expected cytoplasmic pattern (general IHC practice). |
| Unexpected cells stain strongly while the reference population is weak. | Broad DLST expression is reported, but this combination may also reflect nonspecific binding or detection activity (HPA: ubiquitous tissue IHC profile; general IHC practice). | Compare cellular granularity, use a no-primary control, and reassess the IHC-validated antibody’s staining against an HPA High reference tissue (HPA: antibody IHC Supported; HPA: tissue IHC levels). |
| All cells are negative, including the positive reference. | A failed staining or detection step is plausible when an HPA High population is blank (HPA: High in hepatocytes or Purkinje cells; general IHC practice). | Verify reagent order, retrieval execution, antibody application, and positive-control detection in the same run (general IHC practice). The evidence supplied does not identify a DLST-specific retrieval condition. |
| IF/ICC Q: Why does nucleoplasmic staining appear? | HPA reports the nucleoplasm as the main supported ICC-IF location, with mitochondrial and cytosolic locations uncertain (HPA: subcellular ICC-IF). UniProt describes a small nuclear fraction (UniProt P36957 localization). | Interpret that image within its ICC-IF assay context; use the granular cytoplasmic tissue profile when judging paraffin IHC (HPA: tissue IHC profile). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Cervix | Glandular cells | High | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | High | Protein (IHC) | HPA → |
| Kidney | Bowman's capsule | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: DLST is detected in all 44 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot DLST staining in paraffin sections by checking retrieval, signal location, controls, and scoring before interpreting biological differences.
A05097-1 has human paraffin-section IHC images from liver, breast, and lung cancer tissue (IHC image captions). Human IF/ICC is listed, but no IF image is supplied (catalog applications; IF image data).
A05097-1’s rendered IHC figure shows a human liver cancer paraffin section (rendered IHC caption). Additional IHC captions show human breast and lung cancer paraffin sections; the catalog lists IF/ICC for human samples and reactivity with human, mouse, and rat (IHC image captions; catalog applications and reactivity).
Which to pick: For tissue IHC, choose A05097-1: its paraffin-section caption reports EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody; the fixative is unreported (IHC image caption). For IF/ICC, A05097-1 is listed at 5 μg/ml for human samples, though no IF image is supplied (catalog dilution and applications; IF image data). For work across species, A05097-1 lists human, mouse, and rat reactivity, while the supplied IHC images show human tissue only; clonality is unreported (catalog reactivity; IHC image captions; catalog clone field).