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- Table of Contents
Plan paraffin-section EHD1 IHC using cytoplasmic staining in selected cell populations as a reference (HPA tissue IHC). Placental trophoblasts and lymph node germinal center cells offer comparison tissue (HPA tissue IHC); interpret staining with specificity controls because the HPA reagent may recognize more than one gene product (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Tissue: cytoplasmic (HPA tissue IHC); molecular: endosome membranes (UniProt) | |
| Staining pattern | Cytoplasmic in endothelium, trophoblasts, some germinal center cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A02168-1) | |
| Positive control | Kidney+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific). Selected-image fixative and duration unreported (datasheet A02168-1); verify before use. | |
| Caveat | HPA staining may include another gene product (HPA tissue IHC) | |
| Regulation | No expression regulator reported (UniProt) | |
| Isoform / epitope | 0 listed isoforms; one 1–534 chain (UniProt) |
The catalog antibody has a citrate pH 6 IHC protocol (datasheet: A02168-1); the published options below cover human lung specimens (PMC5410234) and mouse testis (PMC2856533).
| Sample | Paraffin-embedded human testis cancer tissues; fixative not specified (datasheet A02168-1) |
| Fixation | Image fixative and duration unreported (datasheet A02168-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A02168-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A02168-1) |
| Primary antibody | Rabbit anti-EHD1, 0.5-1μg/ml (datasheet A02168-1) |
| Primary incubation | Overnight at 4 °C (datasheet A02168-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A02168-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | EHD1-positive staining in cells in glomeruli of kidney (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in endothelial, trophoblastic and a subset of germinal center cells. No signal in the no-primary control. |
EHD1 is associated with recycling and early endosome membranes and the cell membrane; it has no transmembrane segment (UniProt Q9H4M9). In tissue IHC, expect cytoplasmic staining in endothelial and trophoblastic cells and a subset of germinal center cells (HPA tissue IHC). HPA rates the tissue staining Approved, while cautioning that the antibody may target protein from more than one gene and awaits external verification (HPA tissue IHC).
| Cytoplasmic staining in glomerular cells, with signal following cellular outlines or appearing punctate. | This fits the High glomerular staining reported in kidney (HPA tissue IHC). Membrane-associated or vesicular detail is plausible from EHD1 localisation (UniProt Q9H4M9), but a chromogenic section need not resolve individual endosomes (general IHC practice). |
| Staining is confined to nuclei, without the expected cytoplasmic signal. | A nuclear-only pattern conflicts with HPA's cytoplasmic tissue profile and UniProt's membrane and endosome localisation (HPA tissue IHC; UniProt Q9H4M9). Check the counterstain and detection controls before scoring it as EHD1. |
| Strong staining appears in adrenal glandular cells or bronchial respiratory epithelium. | Those cell populations are reported as Not detected (HPA tissue IHC). Review the cell identity and controls; cross-reactivity or endogenous detection activity is possible (general IHC practice). HPA's multi-gene-target caution limits attribution to EHD1 (HPA tissue IHC). |
| Brown deposit spreads across cells and surrounding tissue without a clear cellular pattern. | This is difficult to reconcile with HPA's cell-specific cytoplasmic profile (HPA tissue IHC). Nonspecific binding or endogenous detection activity can produce diffuse background; compare a matched detection control before interpreting intensity (general IHC practice). |
| Glomerular cells show no signal in a kidney section used as a positive reference. | HPA reports High staining in glomerular cells (HPA tissue IHC). First confirm that glomeruli are present and the IHC run worked; a blank section alone cannot distinguish a failed assay from biological variation (general IHC practice). |
| Cell compartment | EHD1 has no transmembrane segment yet associates with recycling endosome, early endosome and cell membranes (UniProt Q9H4M9). Score cytoplasmic signal in its cellular context; do not require a continuous surface rim (general IHC practice). |
| Tissue and cell selection | Kidney glomerular cells are High; placental trophoblastic and lymph-node germinal center cells are Medium (HPA tissue IHC). Compare the specified cells, since whole-section intensity can obscure a subset pattern (general IHC practice). |
| Antibody evidence | HPA049890 and HPA049986 have Approved IHC status, while the tissue profile cautions that the signal may represent protein from more than one gene (HPA antibodies; HPA tissue IHC). Treat agreement with the pattern as supportive, not definitive identity. |
| Expression evidence | UniProt reports high testis expression, whereas HPA reports tissue-enhanced RNA in testis and bone marrow but Not detected protein staining in bone-marrow hematopoietic cells (UniProt Q9H4M9; HPA tissue IHC). RNA or tissue-level expression alone does not specify an IHC-positive cell. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected kidney reference is blank. | The sampled field may lack glomeruli, or the IHC run may have failed (general IHC practice); HPA's High designation applies specifically to glomerular cells (HPA tissue IHC). | Locate glomeruli on the counterstained section and check the run control before changing assay conditions (general IHC practice). |
| Signal is mainly nuclear. | Nuclear-only staining does not match the cytoplasmic tissue profile or membrane and endosome localisation (HPA tissue IHC; UniProt Q9H4M9). | Recheck compartment assignment against the counterstain and inspect a matched detection control; withhold an EHD1-positive score if the nuclear-only pattern persists (general IHC practice). |
| Adrenal glandular cells stain strongly. | HPA lists these cells as Not detected and cautions that its antibody may target protein from more than one gene (HPA tissue IHC). | Verify the cell type, compare detection controls and assess whether the same staining follows the expected positive-cell pattern elsewhere (general IHC practice). |
| Diffuse chromogen obscures cell boundaries. | Nonspecific binding or endogenous detection activity can obscure a cell-specific result (general IHC practice). | Compare a matched detection control and review blocking, detection and wash conditions before scoring the tissue (general IHC practice). |
| Bone marrow is expected to be IHC positive because its RNA is tissue enhanced. | HPA reports tissue-enhanced RNA yet Not detected staining in hematopoietic cells (HPA tissue IHC); the measures answer different questions. | Judge the observed hematopoietic cells against the protein IHC record, and use a glomerulus-containing kidney section for a stronger positive reference (HPA tissue IHC). |
| IF/ICC Q: Should a plasma-membrane or cilium signal be accepted? | HPA supports plasma-membrane localisation and additional primary-cilium and transition-zone localisation in ICC-IF (HPA subcellular). | A: Interpret those as IF/ICC localisation evidence; assess paraffin-section chromogenic staining against the separate tissue IHC pattern (HPA subcellular; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Caution, targets protein from more than one gene. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Kidney | Cells in glomeruli | High | Protein (IHC) | HPA → |
| Adipose tissue | Adipocytes | Medium | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Lung | Alveolar cells | Medium | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
Troubleshoot EHD1 staining in paraffin sections by checking retrieval, cellular pattern and controls before comparing chromogenic signal across samples.
EHD1 IHC images cover human testis cancer, tonsil and placenta, and mouse testis paraffin sections (A02168-1 image captions). IF/ICC images cover A431 and SiHa cells (A02168-1/2 image captions).
A02168-1 has IHC images from human and mouse paraffin sections and an IF/ICC image from A431 cells (catalog image captions). A02168-2 has an IF/ICC image from SiHa cells and lists human, mouse and monkey reactivity; IHC is absent from its application list (catalog image caption; application and reactivity lists).
Which to pick: Choose A02168-1 for paraffin tissue IHC: its own captions document citrate retrieval at pH 6 for 20 minutes, 1 μg/ml primary antibody and DAB detection; the fixative is unreported (A02168-1 IHC image captions). For IF/ICC, A02168-1 is shown in A431 cells at 2 μg/ml and A02168-2 in SiHa cells at 5 μg/ml; neither has a specified clone (catalog IF image captions; clone fields). For cross-species planning, A02168-1 lists human, mouse and rat reactivity with IHC and IF, while A02168-2 lists human, mouse and monkey reactivity with IF/ICC; the tissue IHC images document human and mouse samples for A02168-1 (catalog application and reactivity lists; A02168-1 IHC image captions).