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Plan chromogenic EIF4G1 IHC in paraffin sections using the catalog antibody at 0.5–1 μg/mL (datasheet A01351-2). Assess mainly cytoplasmic staining against documented tissue patterns (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Mainly cytoplasmic in most tissues (HPA tissue IHC) | |
| Staining pattern | Glandular cells: mainly cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A01351-2) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Antibody staining has medium consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Low tissue specificity at RNA level (HPA tissue RNA) | |
| Isoform / epitope | 8 isoforms; confirm epitope coverage (UniProt) |
The catalog antibody protocol uses citrate pH 6 heat retrieval (datasheet A01351-2). The four published EIF4G1 IHC protocols below provide tissue-specific starting points (PMC3580022; PMC7957198; PMC5036801; PMC2873436).
| Sample | Paraffin-embedded human intestinal cancer tissues; fixative not specified (datasheet A01351-2) |
| Fixation | Image fixative and duration unreported (datasheet A01351-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A01351-2) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01351-2) |
| Primary antibody | Rabbit anti-EIF4G1, 0.5-1μg/ml (datasheet A01351-2) |
| Primary incubation | Overnight at 4 °C (datasheet A01351-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01351-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | EIF4G1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Mainly cytoplasmic expression in most tissues. No signal in the no-primary control. |
EIF4G1 staining should be mainly cytoplasmic across many tissues, including glandular cells, neurons and hematopoietic cells (HPA: mainly cytoplasmic in most tissues; HPA: High in these cell types). UniProt also lists nuclear and stress granule localisation, so assess those patterns in context rather than treating them as the routine IHC result (UniProt Q04637: subcellular location). EIF4G1 has no transmembrane segment (UniProt Q04637: topology). Tissue IHC reliability is Approved, with medium consistency against RNA expression (HPA: tissue IHC reliability).
| Clear cytoplasmic staining in colon or appendix glandular cells, with cell outlines and tissue structure intact. | This fits the reported compartment and high staining in these cells (HPA: mainly cytoplasmic in most tissues; HPA: High in colon and appendix glandular cells). Judge staining within the relevant cells, rather than from the overall darkness of a section (standard IHC practice). |
| Predominantly nuclear staining, with little cytoplasmic signal, across the section. | This differs from the main tissue IHC pattern and warrants checking specificity and counterstain interpretation (HPA: mainly cytoplasmic in most tissues; standard IHC practice). Nuclear localisation is listed by UniProt, so a nuclear component alone does not establish an artefact (UniProt Q04637: subcellular location). |
| Strong staining in cells where the expected cell population is absent, or staining that ignores tissue boundaries. | Consider cross-reactivity or endogenous detection activity, then compare with a no-primary control (standard IHC practice). EIF4G1 is broadly expressed, and HPA supplies low-staining examples rather than confirmed negative tissues; staining outside one listed high-staining cell type is not, by itself, a false positive (HPA: low tissue specificity; HPA: tissue IHC levels). |
| Diffuse colour covers stroma, lumina or the whole section without a discernible cellular pattern. | Treat this as background until controls show otherwise; excess detection signal or inadequate blocking can obscure cellular localisation (standard IHC practice). It does not match HPA's mainly cytoplasmic tissue pattern (HPA: tissue IHC profile). |
| Little or no staining in an intact section containing colon glandular cells or cerebellar Purkinje cells. | These are reported high-staining populations, so check the staining run and whether the intended cells are present (HPA: High in colon glandular cells and cerebellar Purkinje cells; standard IHC practice). A single blank section cannot establish absence of EIF4G1 expression (standard IHC practice). |
| Tissue and cell selection | HPA reports high staining in several glandular, neuronal and hematopoietic populations, but low staining in cardiomyocytes and adipocytes (HPA: tissue IHC levels). Low is not a validated negative control, and RNA specificity is low across tissues (HPA: tissue IHC levels; HPA: RNA specificity). |
| Compartment and protein topology | The routine tissue pattern is mainly cytoplasmic; UniProt also lists nucleus and stress granules (HPA: tissue IHC profile; UniProt Q04637: subcellular location). No transmembrane segment or signal peptide is annotated, so a membrane-only or secretory pattern needs scrutiny (UniProt Q04637: topology and processing). |
| Isoforms and antibody epitope | UniProt lists eight EIF4G1 isoforms and multiple modified residues (UniProt Q04637: isoforms and modified residues). The supplied record gives no epitope for the antibody being used, so isoform recognition and modification-dependent staining cannot be predicted from these annotations alone (UniProt Q04637: isoforms and modified residues; supplied antibody data: epitope unreported). |
| Strength of tissue evidence | HPA rates its tissue IHC profile Approved but reports medium consistency with RNA expression (HPA: tissue IHC reliability). HPA028487 and CAB014774 are IHC Approved; that status does not establish that every unusual pattern is specific (HPA: antibody validation; standard IHC practice). |
| IF/ICC Q: What localisation should be expected? | A: Mainly cytosolic staining; HPA calls the cytosol location Supported (HPA: ICC-IF subcellular summary). This is supporting context for localisation, while the primary interpretation here concerns chromogenic tissue IHC (HPA: tissue IHC profile). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in an HPA high-staining cell population. | The relevant cells may be missing, or a staining-run step may have failed (HPA: tissue IHC levels; standard IHC practice). | Confirm cell identity and section integrity, then review antibody dilution, detection and an appropriate run control (standard IHC practice). No EIF4G1-specific retrieval or fixation sensitivity is supplied (HPA: tissue IHC record; UniProt Q04637: record). |
| Signal is faint but remains cytoplasmic. | A faint result alone cannot distinguish weak staining from a run issue; HPA reports different staining levels by cell type (HPA: tissue IHC levels; standard IHC practice). | Compare the same cell population with a high-staining reference section processed in the run, and assess signal against background (HPA: tissue IHC levels; standard IHC practice). |
| Brown deposit appears in a no-primary control. | Endogenous detection activity or nonspecific detection reagents can produce chromogenic signal (standard IHC practice). | Review the detection system and its blocking steps before assigning the deposit to EIF4G1 (standard IHC practice). |
| Background obscures cellular detail. | Nonspecific binding or overly strong detection can mask localisation (standard IHC practice). | Review blocking, washing, antibody dilution and detection conditions using controls; score only distinguishable cellular signal (standard IHC practice). |
| A section looks predominantly nuclear or membrane-localised. | The pattern differs from HPA's mainly cytoplasmic tissue profile; nuclear localisation is nevertheless listed by UniProt (HPA: tissue IHC profile; UniProt Q04637: subcellular location). | Check counterstain and control sections, then compare the same cell type's cytoplasmic staining before calling the pattern specific (standard IHC practice). |
| A low-staining cell population gives measurable colour. | HPA labels some populations Low, not negative; background can also make weak colour difficult to interpret (HPA: tissue IHC levels; standard IHC practice). | Compare cellular localisation and intensity with controls and a reported high-staining population; do not use Low as a zero-signal threshold (HPA: tissue IHC levels; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: EIF4G1 is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot EIF4G1 staining in paraffin section IHC using the catalog antibody’s tissue image and reference localization data.
A01351-2 has IHC images from human cancer tissues and mouse intestine, plus an IF/ICC image from U20S cells (catalog image captions).
A01351-2 is listed for IHC in human, mouse and rat, with paraffin section images from human intestinal, mammary and lung cancers and mouse intestine (catalog applications, reactivity and IHC captions). Its IF/ICC image shows U20S cells (catalog IF caption).
Which to pick: Choose A01351-2 for paraffin section IHC; its tissue captions use citrate retrieval at pH 6 for 20 minutes and 1 μg/ml primary antibody, but do not report the fixative (catalog IHC captions). For IF/ICC, the same SKU has a U20S cell image using 2 μg/ml primary antibody (catalog IF caption). For work across species, the catalog lists human, mouse and rat reactivity, while the supplied IHC images document human and mouse samples (catalog reactivity and IHC captions).