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- Table of Contents
Plan FHL1 paraffin IHC using skeletal myocytes and thyroid glandular cells as high staining references (HPA tissue IHC). Start the IHC-validated antibody at 0.5–1 µg/ml (datasheet A01258-1) and compare cellular staining with controls.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic or nuclear potential; tissue compartment unconfirmed (UniProt) | |
| Staining pattern | High staining in skeletal myocytes and thyroid glandular cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01258-1) | |
| Positive control | Endometrium+4 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A01258-1) | |
| Caveat | Differentiation can shift FHL1 from nucleus to cytosol (UniProt) | |
| Regulation | Isoform 1 is enriched in skeletal muscle (UniProt) | |
| Isoform / epitope | Five isoforms; check antibody epitope coverage across them (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet A01258-1) is accompanied by three published FHL1 IHC protocols (PMC7202308; PMC11551809; PMC6687666).
| Sample | Paraffin-embedded human rectal cancer tissue; fixative not specified (datasheet A01258-1) |
| Fixation | Image fixative and duration unreported (datasheet A01258-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01258-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01258-1) |
| Primary antibody | Rabbit anti-FHL1, 0.5-1μg/ml (datasheet A01258-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01258-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01258-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | FHL1-positive staining in smooth muscle cells of endometrium (HPA tissue IHC: High). HPA tissue profile: Distinct expression in muscle tissue and thyroid glands. No signal in the no-primary control. |
FHL1 should stain mainly cytoplasmic structures, with nuclear signal possible in myoblasts; differentiated myotubes are described as cytosolic (UniProt Q13642 localisation). In tissue IHC, strong signal is reported in skeletal myocytes, smooth muscle cells and thyroid glandular cells (HPA tissue IHC: High). FHL1 has no transmembrane segment (UniProt Q13642 topology). HPA rates its tissue IHC evidence Enhanced, with medium consistency between antibody staining and RNA expression (HPA tissue IHC reliability).
| Strong chromogenic staining in skeletal myocytes, with identifiable cell boundaries and a clean surrounding field. | This matches a high-signal reference cell type (HPA tissue IHC: skeletal myocytes High). Assess the stained cells and their compartment, not the apparent intensity of the whole section; FHL1 is reported in cytoplasm and nucleus, with a cytosolic pattern in differentiated myotubes (UniProt Q13642 localisation). |
| Signal appears exclusively in an unexpected compartment, with no convincing cytoplasmic staining in positive cells. | Treat this as a pattern that needs checking, rather than immediate evidence of FHL1: cytoplasmic and nuclear localisation are reported by UniProt (UniProt Q13642 localisation). A membrane component has been observed in ICC-IF, so membrane signal alone cannot be dismissed categorically; that observation does not establish an expected paraffin IHC pattern (HPA subcellular: plasma membrane Supported). |
| Strong colour appears in cells listed as unstained, or across many unrelated cell types. | Check specificity and detection background before scoring it as FHL1 (standard IHC practice). For example, adrenal glandular cells and bronchial respiratory epithelial cells are listed as Not detected (HPA tissue IHC). Interpret at cell-type level: lung alveolar type I cells are High even though bronchial respiratory epithelial cells are Not detected (HPA tissue IHC). |
| Weak, diffuse colour covers both cells and spaces between them, obscuring cell outlines. | This is difficult to score as a cellular FHL1 pattern (standard IHC practice). Compare with a primary-antibody omission control and inspect blocking, washes and chromogen development for nonspecific background (standard IHC practice). HPA's Enhanced tissue rating describes its antibody evidence; it does not validate background in this run (HPA tissue IHC reliability). |
| No detectable signal in skeletal myocytes while the counterstain and tissue morphology remain readable. | Skeletal myocytes are a useful positive reference because HPA reports High staining there (HPA tissue IHC). Review antibody application, detection reagents and the run's positive control before calling the specimen negative (standard IHC practice). The supplied sources do not establish a target-specific fixation sensitivity or an FHL1 antigen-retrieval condition. |
| Cell type and sampling | Choose and score the relevant cells within each section: skeletal myocytes, thyroid glandular cells and endometrial smooth muscle cells are High, whereas several other sampled cell types are Not detected (HPA tissue IHC). A mixed tissue can therefore contain both expected positive and expected unstained cells (HPA tissue IHC). |
| Isoform distribution | Five isoforms are listed, and their reported tissue distributions differ (UniProt Q13642 isoforms and tissue specificity). An antibody's recognised epitope is not supplied here, so a tissue result cannot be assigned to a particular isoform from this record alone. |
| Subcellular interpretation | UniProt places FHL1 in cytoplasm and nucleus and describes a myoblast-to-myotube localisation difference (UniProt Q13642 localisation). HPA ICC-IF calls cytosol uncertain and additional plasma membrane localisation supported (HPA subcellular); use that as context, not as a required chromogenic IHC pattern. |
| Strength of the tissue reference | HPA assigns tissue IHC Enhanced reliability while reporting medium consistency with RNA expression (HPA tissue IHC reliability). Its three listed antibodies each have Enhanced IHC validation (HPA antibodies); that supports use of the reported pattern as a reference but does not validate the catalog antibody or every tissue preparation. |
| Detection method | If using enzyme-based chromogenic detection, endogenous enzyme activity and nonspecific reagent binding can create colour unrelated to primary-antibody binding (standard IHC practice). Use method-appropriate controls to separate those signals; this is general workflow advice, not a reported FHL1-specific effect. |
| Situation | Likely cause | Next action |
|---|---|---|
| Skeletal muscle positive control is blank. | A failed antibody or detection step is possible (standard IHC practice); skeletal myocytes are expected to stain strongly (HPA tissue IHC: High). | Check that the primary antibody, detection reagents and chromogen were applied and active; rerun with an appropriate positive control (standard IHC practice). Review antigen retrieval against the antibody's own IHC instructions without assuming an FHL1-specific retrieval requirement. |
| The entire section is brown, including spaces without cells. | Nonspecific reagent deposition, inadequate washing or excessive chromogen development may obscure cellular staining (standard IHC practice). | Compare a primary-antibody omission control; review blocking, washing and development time for the detection system (standard IHC practice). Score FHL1 only after cell boundaries and compartments can be distinguished. |
| Strong signal appears in adrenal glandular cells or bronchial respiratory epithelial cells. | Those specific cell types are listed as Not detected (HPA tissue IHC); cross-reactivity or detection background is possible (standard IHC practice). | Check the exact stained cell population, then compare omission and other appropriate specificity controls (standard IHC practice). Do not generalise a negative bronchial epithelial result to lung alveolar type I cells, which are High (HPA tissue IHC). |
| Staining is mainly nuclear in a section expected to contain differentiated muscle cells. | UniProt describes predominantly nuclear FHL1 in myoblasts and cytosolic FHL1 in differentiated myotubes (UniProt Q13642 localisation). The supplied evidence does not define a nuclear-only paraffin IHC reference pattern. | Confirm cell identity and morphology, inspect the positive control and compare the distribution with background controls before interpreting a nuclear-only result (standard IHC practice). |
| Signal varies between apparently similar fields or tissues. | The sampled cell types may differ: HPA reports High skeletal myocytes and thyroid glandular cells but Medium adipocytes and Low ovarian stroma cells (HPA tissue IHC). HPA also reports only medium consistency with RNA expression (HPA tissue IHC reliability). | Record the cell type and compartment for each scored area, and compare like cells across sections under the same staining conditions (standard IHC practice). Avoid treating a tissue-level average as a required intensity for every cell. |
| Can an IF/ICC image determine the expected paraffin IHC pattern? | HPA's ICC-IF summary reports mainly cytosolic localisation with additional plasma membrane signal, while marking the cytosol assignment uncertain (HPA subcellular). Its images come from A-431, U-251MG and U2OS cells (HPA subcellular). | Use those images only as localisation context. Judge chromogenic tissue staining against HPA's cell-specific IHC observations and the section's controls (HPA tissue IHC; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Endometrium | Smooth muscle cells | High | Protein (IHC) | HPA → |
| Lung | Alveolar cells type I | High | Protein (IHC) | HPA → |
| Placenta | Syncytiotrophoblasts - cell body | High | Protein (IHC) | HPA → |
| Skeletal muscle | Myocytes | High | Protein (IHC) | HPA → |
| Testis | Elongated or late spermatids | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot FHL1 staining in paraffin sections using the catalog antibody’s tissue IHC caption and protein localisation evidence (datasheet A01258-1; UniProt Q13642).
The catalog covers human paraffin-section IHC and IF in U20S cells (A01258-1 image captions); a second IHC-listed antibody has human, mouse and rat reactivity (M01258 catalog).
A01258-1 has IHC images from human rectal and renal cancer paraffin sections and an IF image from U20S cells (A01258-1 image captions). M01258 is listed for IHC with human, mouse and rat reactivity, but has no IHC image in the payload (M01258 catalog).
Which to pick: For tissue IHC, choose A01258-1 when a demonstrated human paraffin-section workflow is useful; its captions specify EDTA retrieval at pH 8.0 and 1 μg/ml primary antibody, while the fixative is unreported (A01258-1 IHC captions). For IF/ICC, choose A01258-1 because both applications are listed and its U20S cell IF image uses 2 μg/ml primary antibody (A01258-1 catalog and IF caption). For mouse or rat work, consider rabbit monoclonal M01258 because those species and IHC are listed, while its payload provides no tissue IHC image or fixation details (M01258 catalog).