This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan paraffin-section GABBR2 staining around Purkinje dendrites and cortical neuropil (HPA tissue IHC). Start with the catalog antibody’s 2–5 μg/ml IHC range (datasheet A03830-2), and interpret unexpected staining cautiously because presumed off-target binding was observed (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cell and postsynaptic membranes expected (UniProt) | |
| Staining pattern | High in Purkinje dendrites and cortical neuropil (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03830-2) | |
| Positive control | Cerebellum+2 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Presumed off-target staining was observed (HPA tissue IHC) | |
| Regulation | Brain-enriched expression (UniProt) | |
| Isoform / epitope | No isoforms annotated; extracellular vs cytoplasmic epitope matters (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: A03830-2) with two published GABBR2 tissue IHC protocols (PMC10415970; PMC9434366).
| Sample | Paraffin-embedded human prostate cancer tissue; fixative not specified (datasheet A03830-2) |
| Fixation | Image fixative and duration unreported (datasheet A03830-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03830-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03830-2) |
| Primary antibody | Rabbit anti-GABBR2, 2-5 μg/ml (datasheet A03830-2) |
| Primary incubation | Overnight at 4 °C (datasheet A03830-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03830-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GABBR2-positive staining in purkinje cells - dendrites of cerebellum (HPA tissue IHC: High). HPA tissue profile: Selective expression in CNS. No signal in the no-primary control. |
GABBR2 is a seven-pass membrane receptor annotated at the cell membrane and postsynaptic cell membrane (UniProt O75899 topology and subcellular location). In paraffin-section IHC, expect selective CNS staining, strongest in cerebellar Purkinje-cell dendrites and cerebral-cortex neuropil (HPA: High in both). HPA rates tissue staining reliability Enhanced, while reporting medium agreement with RNA and presumed off-target binding that was disregarded (HPA tissue IHC).
| Strong staining outlines Purkinje-cell dendrites or follows cortical neuropil, with little nuclear signal. | This fits the strongest reported tissue patterns (HPA: High in Purkinje-cell dendrites and cortical neuropil). A membrane-associated distribution is consistent with GABBR2 topology (UniProt O75899). Chromogenic IHC cannot by itself resolve an individual postsynaptic membrane (general IHC practice). |
| Nuclei dominate the stain, while expected dendritic or neuropil structures remain faint. | A predominantly nuclear pattern conflicts with the annotated membrane location (UniProt O75899 subcellular location). Treat it as suspect and compare with a positive tissue and a no-primary control before assigning it to GABBR2 (general IHC practice). |
| Adipocytes or other cells reported as negative stain strongly. | HPA reports GABBR2 as Not detected in adipocytes from adipose tissue (HPA tissue IHC). Staining there raises concern for nonspecific antibody binding or endogenous detection activity; it does not, on its own, identify which source caused the signal (general IHC practice). |
| Brown signal spreads evenly across tissue, including areas without recognizable cellular detail. | Diffuse staining obscures the selective CNS pattern reported by HPA (HPA tissue IHC). Assess no-primary and detection-only controls for reagent background, then review blocking, washing and detection conditions (general IHC practice). |
| Cerebellar dendrites and cortical neuropil show no detectable stain. | Those are strong reference patterns, so a blank result calls for a run-level check (HPA: High in both). Confirm tissue identity, antibody use, antigen retrieval and detection performance before interpreting the specimen as GABBR2-negative (general IHC practice). |
| Tissue and cell selection | HPA reports High staining in cerebellar Purkinje-cell dendrites and cortical neuropil, Medium in caudate neuronal cells, and Low in hippocampal neuronal cells (HPA tissue IHC). These differences make the first two clearer positive references; a weak hippocampal result alone is less decisive. |
| Membrane topology and epitope | GABBR2 has seven transmembrane segments, a large extracellular region at residues 42–483 and a cytoplasmic C-terminal region at 742–941 (UniProt O75899 topology). The supplied record does not locate the staining antibody's epitope, so topology alone cannot prescribe retrieval or permeabilisation. |
| Protein processing | UniProt lists a signal peptide at residues 1–41 and a mature chain at 42–941 (UniProt O75899 processing). The record does not establish a shed fragment or a processing-dependent tissue stain; avoid using these annotations to explain an unexpected compartment. |
| Evidence strength | HPA calls tissue staining reliability Enhanced but notes medium agreement with RNA and presumed off-target binding that was disregarded (HPA tissue IHC). Two listed antibodies have Enhanced IHC status; a third is Approved (HPA antibodies). Interpret an isolated unusual pattern with controls. |
| IF/ICC Q&A: Is the same pattern established in cultured cells? | HPA summarizes the subcellular location as membrane, but provides no ICC-IF image cell lines, no available main location and no ICC validation for the listed antibodies (HPA subcellular; HPA antibodies). Use this page's tissue pattern as context, not as a validated cultured-cell image reference. |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive reference tissue is blank. | A failed stain run, unsuitable retrieval or weak detection is possible (general IHC practice); the expected strong reference signal comes from HPA (HPA: High in cerebellar dendrites and cortical neuropil). | Verify section identity and detection controls, then review antibody preparation and run conditions. If needed, compare retrieval conditions using the same positive reference (general IHC practice); no GABBR2-specific retrieval condition is supplied. |
| Only a faint hippocampal neuronal signal appears. | Hippocampal neuronal staining is reported Low, so faint signal may match that reference rather than indicate a failed run (HPA tissue IHC). | Judge the run against cerebellar dendrites or cortical neuropil, where HPA reports High staining (HPA tissue IHC). Compare matched negative controls before scoring a faint cell signal (general IHC practice). |
| Strong stain appears in HPA-negative adipocytes. | The pattern conflicts with Not detected adipocyte staining (HPA tissue IHC). Nonspecific binding or endogenous detection activity could account for it (general IHC practice). | Compare no-primary and detection-only controls; review blocking and detection chemistry if those controls stain (general IHC practice). Recheck cell identification before calling a new positive pattern. |
| Nuclei stain more strongly than neuronal processes. | Dominant nuclear staining disagrees with GABBR2's annotated membrane location (UniProt O75899 subcellular location), although the stain alone cannot identify the cause. | Check the no-primary control and compare staining with Purkinje-cell dendrites or cortical neuropil (HPA: High in both; general IHC practice). Do not score nuclear signal as the expected pattern. |
| The whole section has diffuse chromogenic background. | Excess detection signal or inadequate blocking or washing can obscure tissue detail (general IHC practice). HPA describes selective CNS expression rather than uniform tissue staining (HPA tissue IHC). | Inspect negative controls, review reagent timing and washing, and reduce background before interpreting cell distribution (general IHC practice). |
| An IF/ICC result seems inconsistent with tissue IHC. | HPA provides a membrane summary but no ICC-IF image cell lines or ICC validation for the listed antibodies (HPA subcellular; HPA antibodies). | Assess the IF/ICC result with its own localisation and negative controls (general IF practice). Do not infer that a cultured-cell result has the same validation as the reported tissue IHC pattern (HPA tissue IHC; HPA antibodies). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebellum | Purkinje cells - dendrites | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuropil | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot chromogenic GABBR2 staining in paraffin sections using the catalog antibody’s tissue image, protein topology, and tissue expression evidence.
A03830-2 has a human paraffin-section IHC figure (image caption). M03830-2 lists IHC and IF/ICC for human, mouse, and rat, but has no supplied IF figure (catalog applications/reactivity; image alts).
A03830-2 will render with an IHC figure from a human prostate cancer paraffin section (image caption). M03830-2 will render with listed IHC and IF/ICC applications and human, mouse, and rat reactivity; no IHC or IF image is supplied (catalog applications/reactivity; image alts).
Which to pick: For tissue IHC, choose A03830-2: its figure documents staining in a human paraffin section, with 2 μg/ml primary antibody and EDTA retrieval at pH 8.0; the fixative is unreported (A03830-2 image caption). For IF/ICC, M03830-2 lists both applications and is a rabbit monoclonal, clone 18G32, though no IF figure is supplied (M03830-2 catalog; image alts). For cross-species work, both list human, mouse, and rat reactivity; the supplied tissue IHC figure documents human tissue only (catalog reactivity; A03830-2 image caption).