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- Table of Contents
Plan chromogenic GATA3 IHC around nuclear staining in selected tissues (HPA tissue IHC). Compare tissue controls using the catalog antibody's 0.5–1 μg/mL IHC-P range (datasheet A00593-1), and assess possible off-target staining (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining in selected tissues (HPA tissue IHC) | |
| Staining pattern | Parathyroid glandular and skin basal cells: nuclear staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00593-1) | |
| Positive control | Kidney+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A00593-1) | |
| Caveat | Presumed off-target staining can complicate interpretation (HPA tissue IHC) | |
| Regulation | IL33-linked macrophage response (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope coverage is unknown (UniProt) |
The catalog antibody's IHC-P protocol (datasheet A00593-1) and one published FFPE tumor protocol (PMC10969368) provide starting conditions for GATA3 staining.
| Sample | Paraffin-embedded human mammary cancer tissue; fixative not specified (datasheet A00593-1) |
| Fixation | Image fixative and duration unreported (datasheet A00593-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00593-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00593-1) |
| Primary antibody | Rabbit anti-GATA3, 0.5-1μg/ml (datasheet A00593-1) |
| Primary incubation | Overnight at 4 °C (datasheet A00593-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A00593-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GATA3-positive staining in cells in glomeruli of kidney (HPA tissue IHC: High). HPA tissue profile: Nuclear expression in selected tissues, including parathyroid gland and skin. No signal in the no-primary control. |
GATA3 is a nuclear transcription factor with no transmembrane segment (UniProt P23771: nucleus; topology). In paraffin IHC, expect nuclear staining in selected cells: high in kidney glomerular cells and medium in breast and parathyroid glandular cells, among other reported sites (HPA tissue IHC). HPA rates the tissue profile Enhanced, while noting medium consistency with RNA data and presumed off-target staining that was disregarded (HPA tissue IHC: reliability).
| Distinct nuclear staining in cells of the kidney glomeruli, with little staining outside their nuclei (HPA tissue IHC: High in glomerular cells; UniProt P23771: nucleus). | This fits the reported high-signal tissue pattern and the expected compartment. Score the stained cell population and nuclear signal separately; a strong field-wide color reaction alone does not establish GATA3 positivity (HPA tissue IHC; standard IHC practice). |
| Predominantly cytoplasmic or membrane staining, with nuclei remaining clear (UniProt P23771: nucleus; HPA subcellular: supported nucleoplasm). | This conflicts with the supported localization. Treat it as a staining artifact or nonspecific signal until a nuclear pattern can be demonstrated with suitable controls; GATA3 has no annotated transmembrane segment (UniProt P23771: topology; standard IHC practice). |
| Prominent staining in cells reported as undetected, such as adipocytes or adrenal glandular cells (HPA tissue IHC: Not detected in these cell types). | Question antibody specificity or endogenous detection activity before interpreting those cells as positive. HPA’s negative calls apply to the named cell populations, not every cell in the tissue; its profile also notes presumed off-target binding (HPA tissue IHC: reliability; standard IHC practice). |
| A diffuse brown haze spreads across tissue, including spaces between cells (standard IHC practice). | Diffuse background does not reproduce the selected nuclear pattern (HPA tissue IHC: nuclear expression). Review blocking, washing, chromogen development and endogenous enzyme controls for the detection system used (standard IHC practice). |
| No nuclear signal appears in kidney glomerular cells on the same run (HPA tissue IHC: High in glomerular cells). | The run may be technically insensitive; tissue condition or the actual sampled cell population may also matter (standard IHC practice). Check that glomerular cells are present, then review the antibody’s validated IHC-P conditions and detection controls before calling the sample negative (HPA tissue IHC; standard IHC practice). |
| Cell population and tissue choice (HPA tissue IHC) | Kidney glomerular cells are reported High; breast, epididymis, parathyroid and rectal glandular cells are Medium, as are placental syncytiotrophoblasts and skin basal-layer cells. Compare the named cells rather than assigning one expected intensity to a whole section (HPA tissue IHC). |
| Limits of a negative comparator (HPA tissue IHC) | Adipocytes, adrenal and appendix glandular cells, bone marrow hematopoietic cells and bronchial respiratory epithelial cells are reported Not detected. That wording describes those cells in the HPA observations; it does not establish a universal absence of GATA3 in every specimen or condition (HPA tissue IHC). |
| Evidence strength and antibody selection (HPA tissue IHC; HPA antibodies) | The tissue profile is Enhanced but has medium staining-to-RNA consistency, with presumed off-target binding disregarded. CAB016217 has Enhanced IHC validation; HPA029730 has Supported ICC validation and no supplied IHC rating. Keep each validation attached to its stated application (HPA tissue IHC; HPA antibodies). |
| What does IF/ICC add? (HPA subcellular) | HPA reports supported nucleoplasmic localization in ICC-IF, consistent with a nuclear IHC readout (HPA subcellular; UniProt P23771: nucleus). It supports the compartment expectation, but its images and ICC validation do not supply an IHC-P staining condition (HPA subcellular; HPA antibodies). |
| Isoforms and protein processing (UniProt P23771) | UniProt lists two isoforms and a full-length 1–443 chain, with no signal peptide or propeptide annotated. The supplied record does not map an antibody epitope to either isoform, so it cannot justify an isoform-specific tissue interpretation (UniProt P23771: isoforms; processing). |
| Situation | Likely cause | Next action |
|---|---|---|
| Kidney glomerular cells lack the expected nuclear color (HPA tissue IHC: High). | The sampled section may lack the named cells, or the run may have weak detection (standard IHC practice). | Confirm glomerular cells on the section and assess a known-positive control; then check the catalog antibody’s validated IHC-P instructions and detection steps (HPA tissue IHC; standard IHC practice). |
| Brown signal outlines cells or fills cytoplasm while nuclei stay pale (UniProt P23771: nucleus). | The distribution is inconsistent with the supported nuclear and nucleoplasmic localization (UniProt P23771; HPA subcellular). | Review morphology, counterstain and detection controls; require reproducible nuclear signal before scoring GATA3 positivity (standard IHC practice). |
| Reported-negative cells stain strongly, including adipocytes (HPA tissue IHC: Not detected in adipocytes). | Nonspecific binding or endogenous detection activity is plausible; HPA notes presumed off-target staining in its tissue assessment (HPA tissue IHC: reliability; standard IHC practice). | Compare a reagent-omission or detection-only control and a named positive population, then reassess specificity in the same run (standard IHC practice; HPA tissue IHC). |
| Most of the section has diffuse chromogen deposit (standard IHC practice). | Background from blocking, washing, detection chemistry or chromogen development can obscure the expected nuclear pattern (standard IHC practice; HPA tissue IHC). | Check the applicable blocking and wash steps, endogenous enzyme control and chromogen development time for the detection system (standard IHC practice). |
| A breast section stains less strongly than a kidney section (HPA tissue IHC: Medium in breast glandular cells; High in glomerular cells). | The reported levels differ by named cell population, so equal intensity is not the expected comparison (HPA tissue IHC). | Judge breast glandular nuclei against the reported medium pattern and the run’s controls; avoid using kidney intensity as a required threshold (HPA tissue IHC; standard IHC practice). |
| ICC-IF shows a nucleoplasmic pattern, but IHC-P gives a different result (HPA subcellular: supported nucleoplasm). | The supplied HPA antibody ratings are application-specific: Supported ICC for HPA029730 and Enhanced IHC for CAB016217 (HPA antibodies). | Interpret the IHC-P section with its own validated antibody and tissue controls; use ICC-IF only to inform the expected compartment (HPA antibodies; HPA subcellular; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Presumed off target binding observed and disregarded.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Kidney | Cells in glomeruli | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Medium | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Placenta | Syncytiotrophoblasts | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
Use nuclear staining and matched tissue controls to troubleshoot GATA3 in paraffin sections; the selected antibody has a documented chromogenic IHC example (datasheet A00593-1).
Catalog IHC images cover human tumors, rat intestine and brain, and mouse brain; IF images cover HeLa cells and rat and mouse brain (catalog IHC/IF captions).
A00593-1 shows human mammary cancer paraffin-section IHC and HeLa-cell IF (A00593-1 IHC/IF captions); A00593 shows rat and mouse brain IHC and IF (A00593 IHC/IF captions). M00593 IHC captions depict rat intestine and human pituitary tumor, thyroid cancer, and small cell lung cancer, although its listed reactivity is Human only (M00593 IHC captions and catalog reactivity); P00593 shows paraffin-section IHC in human bladder cancer (P00593 IHC caption).
Which to pick: For human tissue IHC, choose A00593-1: its paraffin-section caption documents EDTA retrieval at pH 8.0 and a 1 μg/mL primary concentration; the fixative is unreported (A00593-1 IHC caption). For human IF/ICC, A00593-1 lists both applications and has a HeLa IF image (A00593-1 applications and IF caption); M00593 is a rabbit monoclonal with ICC/IF listed but no IF image caption (M00593 catalog). For mouse or rat tissue IHC and IF, choose A00593, which lists both species and shows brain staining in both assays (A00593 reactivity and IHC/IF captions); P00593 is a phospho-GATA3 (S308) IHC option with a human bladder cancer image (P00593 title, applications and IHC caption).