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- Table of Contents
Plan chromogenic GFRA2 IHC in paraffin sections using the catalog antibody at 2–5 μg/mL (datasheet A06103-2). Interpret cytoplasmic tissue staining cautiously because HPA rates its agreement with RNA expression as uncertain (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic in tissue IHC (HPA tissue IHC); cell membrane (UniProt) | |
| Staining pattern | Cytoplasmic staining across several tissue cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A06103-2) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A06103-2) | |
| Caveat | Antibody staining has low concordance with RNA (HPA tissue IHC) | |
| Regulation | Expression regulation is unreported (UniProt) | |
| Isoform / epitope | 3 isoforms; map extracellular epitopes to mature aa 22–444 (UniProt) |
The catalog antibody has an IHC-P protocol (datasheet: A06103-2); two published GFRA2 IHC protocols provide tissue-specific conditions (PMC11541580; PMC10649213).
| Sample | Paraffin-embedded human testis cancer tissue; fixative not specified (datasheet A06103-2) |
| Fixation | Image fixative and duration unreported (datasheet A06103-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A06103-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A06103-2) |
| Primary antibody | Rabbit anti-GFRA2, 2-5 μg/ml (datasheet A06103-2) |
| Primary incubation | Overnight at 4 °C (datasheet A06103-2) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A06103-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GFRA2-positive staining in glandular cells of adrenal gland (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in several tissues. No signal in the no-primary control. |
GFRA2 is a cell-surface, GPI-anchored receptor with no transmembrane segment (UniProt O00451 topology/keywords). In paraffin IHC, assess staining in the specific cells reported by HPA, including kidney tubule cells and cerebellar Purkinje cells (HPA tissue IHC: Medium). HPA also describes cytoplasmic staining across several tissues, but rates its tissue IHC evidence Uncertain because antibody staining and RNA expression show low consistency (HPA tissue IHC: Uncertain).
| Distinct staining outlines kidney tubule cells or cerebellar Purkinje cells; signal may also appear within the cell (HPA tissue IHC: Medium; HPA subcellular: plasma membrane and vesicles). | A membrane-associated pattern fits GFRA2 topology and approved ICC-IF localization; intracellular signal can be considered alongside HPA’s vesicle localization and cytoplasmic tissue-IHC profile (UniProt O00451 topology; HPA subcellular: approved; HPA tissue IHC: cytoplasmic). Confirm the stained cell population and controls before assigning specificity (standard IHC practice). |
| Staining is predominantly nuclear, with little convincing cell-surface or cytoplasmic signal. | This conflicts with the documented GFRA2 locations and warrants investigation as possible nonspecific staining or a localization artefact; localization alone cannot establish its cause (UniProt O00451: cell membrane; HPA subcellular: plasma membrane and vesicles; standard IHC interpretation). |
| Strong staining appears in adipocytes or heart cardiomyocytes, or in a cell population outside those described for the section (HPA tissue IHC: Not detected in these cells). | Check cell identification and staining controls. Cross-reactivity or endogenous chromogenic activity are possible explanations, not diagnoses from appearance alone (HPA tissue IHC: Not detected; standard IHC practice). HPA’s Uncertain IHC rating also limits how firmly a discordant result can be classified (HPA tissue IHC: Uncertain). |
| Color is diffuse across the section, including spaces or structures without discernible cells. | A broad deposit without cell boundaries does not match the reported GFRA2 cellular patterns (HPA tissue IHC; HPA subcellular). In chromogenic IHC, inadequate blocking, washing, or endogenous-activity control can produce background; compare a no-primary control (standard IHC practice). |
| No staining appears in kidney tubules or cerebellar Purkinje cells despite an otherwise readable section (HPA tissue IHC: Medium). | Treat these as HPA-reported reference populations, not guaranteed positive controls: the tissue IHC rating is Uncertain (HPA tissue IHC). Check assay performance and tissue integrity with appropriate controls before calling GFRA2 absent (standard IHC practice). |
| Localization and topology (UniProt O00451; HPA subcellular). | GFRA2 is annotated at the cell membrane without a transmembrane segment and carries a GPI-anchor keyword (UniProt O00451). Approved ICC-IF images place it mainly at the plasma membrane, with additional vesicles (HPA subcellular: approved). Tissue IHC instead reports cytoplasmic expression, so interpret compartment differences in light of method and HPA’s Uncertain IHC rating (HPA tissue IHC). |
| Choice of reference cells (HPA tissue IHC). | HPA reports Medium staining in adrenal glandular cells, bronchial respiratory epithelium, kidney tubules and cerebellar Purkinje cells, among others (HPA tissue IHC: Medium). It reports Not detected in adipocytes and heart cardiomyocytes (HPA tissue IHC: Not detected). These are reported observations, not independently validated guarantees for an individual slide (HPA tissue IHC: Uncertain). |
| Protein processing and isoforms (UniProt O00451). | The annotated mature chain spans residues 22–444; the signal peptide is 1–21, the propeptide 445–464, and three isoforms are listed (UniProt O00451 processing/isoforms). Epitope position is therefore relevant when comparing antibodies, but no epitope mapping or isoform-specific staining is supplied here (UniProt O00451 record). |
| Retrieval and detection conditions (standard IHC practice). | Antigen retrieval, blocking and chromogenic detection can affect general IHC readability (standard IHC practice). No supplied GFRA2 source establishes a preferred retrieval condition or target-specific fixation sensitivity; optimize with controls and avoid attributing a weak result to GFRA2-specific masking (HPA tissue IHC; UniProt O00451). |
| Does IF/ICC predict the paraffin IHC result? (HPA subcellular; HPA tissue IHC). | ICC-IF localization is approved at the plasma membrane and vesicles, whereas tissue IHC is rated Uncertain and described as cytoplasmic (HPA subcellular: approved; HPA tissue IHC: Uncertain). Use IF/ICC as a localization cross-check, not as validation of IHC signal intensity or a paraffin-section protocol (standard assay interpretation). |
| Situation | Likely cause | Next action |
|---|---|---|
| A medium-reference cell population is blank (HPA tissue IHC: Medium). | An assay or tissue-control failure is possible; HPA’s Uncertain rating also means its reported staining may not reproduce (HPA tissue IHC: Uncertain; standard IHC practice). | Confirm section quality and detection with appropriate controls, then optimize retrieval and catalog-antibody dilution using its IHC-P instructions (standard IHC practice). Do not infer a GFRA2-specific fixation effect from this result. |
| Dominant nuclear color obscures cell boundaries. | Nuclear localization is unsupported by the supplied GFRA2 annotations; nonspecific signal is possible (UniProt O00451: cell membrane; HPA subcellular: plasma membrane and vesicles). | Compare no-primary and tissue controls, review counterstain and chromogen deposits, and reassess the actual stained compartment (standard IHC practice). |
| Adipocytes or heart cardiomyocytes stain strongly (HPA tissue IHC: Not detected). | Unexpected cellular staining may reflect cross-reactivity, endogenous detection activity, or a discrepancy with HPA’s uncertain tissue profile (HPA tissue IHC: Uncertain; standard IHC practice). | Verify cell identity, include a no-primary control and check the relevant endogenous-activity blocking step before treating the staining as GFRA2 (standard IHC practice). |
| The whole section has diffuse chromogen. | Background can result from inadequate blocking, washing or endogenous-activity control in chromogenic IHC (standard IHC practice). | Review those steps and compare a no-primary section; score GFRA2 only where cell-associated signal remains distinguishable (standard IHC practice). |
| Cytoplasmic signal appears without a clear membrane rim. | HPA describes cytoplasmic tissue IHC and additional vesicles in ICC-IF, while UniProt places GFRA2 at the membrane (HPA tissue IHC; HPA subcellular; UniProt O00451). | Record the compartment as observed, compare the relevant cell type and controls, and avoid calling the pattern definitive because HPA rates tissue IHC Uncertain (HPA tissue IHC: Uncertain; standard IHC practice). |
| Two antibodies give different cellular patterns. | HPA lists two rabbit polyclonal antibodies with Uncertain IHC status; agreement is therefore not established by the supplied validation summary (HPA antibodies: HPA024704, CAB032791). | Document each antibody’s pattern separately, compare controls and the HPA-reported cells, and withhold a firm localization call until evidence resolves the discrepancy (HPA tissue IHC: Uncertain; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Uncertain — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
| Cerebellum | Purkinje cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Cervix | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot GFRA2 staining in paraffin sections by checking retrieval, compartment, controls, and scoring before interpreting a chromogenic signal.
The catalog includes GFRA2 staining images from human and rat paraffin sections (A06103-2 image captions) and human HeLa cells (A06103 image caption).
A06103-2 is listed for IHC and IF, with IHC images from human testis cancer, human thyroid cancer, and rat testis paraffin sections (catalog applications; A06103-2 image captions). A06103 is listed for ICC, with an image from HeLa cells at 5 μg/mL (catalog applications; A06103 image caption).
Which to pick: Choose A06103-2 for tissue IHC: its images document paraffin sections, although the fixative is unreported (A06103-2 image captions). For IF on sections, choose A06103-2; for ICC in cultured cells, choose A06103, whose HeLa image uses 5 μg/mL (catalog applications; A06103-2 IF image captions; A06103 image caption). Both list human, mouse, and rat reactivity, but the supplied staining images show human and rat sections for A06103-2 and human HeLa cells for A06103, so mouse staining needs verification (catalog reactivity; image captions).