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- Table of Contents
Plan GNG7 paraffin IHC using caudate neuronal cells as a positive reference (HPA tissue IHC). Start with the IHC-validated antibody at 2–5 μg/mL (datasheet A10690-1) and assess staining against a negative control.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cell membrane expected; tissue compartment unconfirmed (UniProt) | |
| Staining pattern | High staining in caudate neuronal cells; compartment unspecified (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A10690-1) | |
| Positive control | Caudate | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | HPA staining may include protein from more than one gene (HPA tissue IHC) | |
| Regulation | Reduced in pancreatic and esophageal cancer (UniProt) | |
| Isoform / epitope | No annotated isoforms; processed chain spans residues 2–65 (UniProt) |
Start with the catalog antibody’s IHC-P protocol, then compare the published paraffin-section protocols for head and neck squamous cell carcinoma and bladder cancer (datasheet A10690-1; PMC3334494; PMC13466384).
| Sample | Paraffin-embedded human bladder cancer tissue; fixative not specified (datasheet A10690-1) |
| Fixation | Image fixative and duration unreported (datasheet A10690-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A10690-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A10690-1) |
| Primary antibody | Rabbit anti-GNG7, 2-5μg/ml (datasheet A10690-1) |
| Primary incubation | Overnight at 4 °C (datasheet A10690-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A10690-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GNG7-positive staining in neuronal cells of caudate (HPA tissue IHC: High). HPA tissue profile: Expressed in the CNS, mainly in caudate nucleus. No signal in the no-primary control. |
GNG7 is annotated at the cell membrane and has no transmembrane segment (UniProt O60262 topology). In paraffin tissue sections, expect the strongest IHC signal in caudate neuronal cells (HPA: High in caudate neuronal cells). HPA rates the tissue pattern Supported because staining is consistent with RNA expression, while cautioning that the antibody may target protein from more than one gene and awaits external verification (HPA: tissue IHC reliability).
| Strong staining associated with caudate neuronal cells, especially at cell boundaries or processes (HPA: High in caudate neuronal cells; UniProt O60262: cell membrane). | This fits the reported positive tissue and membrane annotation. Score the neuronal pattern and its distribution across the section; chromogenic IHC alone does not prove that every stained outline is exclusively GNG7 (HPA: Supported, with multiple-gene-target caution). |
| Predominantly nuclear staining, with little neuronal membrane-associated signal (UniProt O60262: cell membrane). | A nuclear-dominant pattern conflicts with the annotated location and warrants review for nonspecific staining or a detection artefact. Recheck the antibody and detection controls before assigning it to GNG7 (UniProt O60262: cell membrane; standard IHC practice). |
| Prominent staining of adipocytes or cerebellar granular-layer cells (HPA: Not detected in those cell populations). | These are discordant cell-type results, rather than proof that the whole tissue must be blank. Consider cross-reactivity or endogenous detection activity; HPA also cautions that the antibody may target protein from more than one gene (HPA: tissue IHC and reliability). |
| Widespread, fairly uniform chromogen over cells and surrounding tissue, without a recognizable neuronal pattern (HPA: High in caudate neuronal cells). | Treat this as background until controls show otherwise. Review blocking, washes, primary-antibody concentration and the detection-only control; these are general IHC checks, not reported GNG7-specific sensitivities (standard IHC practice). |
| No convincing neuronal signal in a caudate section (HPA: High in caudate neuronal cells). | A negative result in the reported positive tissue leaves the run inconclusive. Check tissue identity, staining controls, antigen retrieval and detection steps before concluding that GNG7 is absent from that specimen (HPA: tissue IHC; standard IHC practice). |
| Tissue and cell choice (HPA: tissue IHC) | Caudate neuronal cells provide the clearest reported positive comparison; cerebral-cortex neuropil is Low. HPA lists adipocytes and cerebellar granular-layer cells as Not detected, which applies to those cells, not every cell in their tissues (HPA: tissue IHC). |
| Membrane association (UniProt O60262 topology) | GNG7 is annotated at the cell membrane without a transmembrane segment. Interpret compartment at cellular resolution; the record does not define an IHC-specific epitope or require a continuous, sharp membrane rim (UniProt O60262 topology). |
| Antibody evidence (HPA: HPA057790 IHC Supported) | HPA lists one rabbit polyclonal antibody with IHC Supported status. Its tissue-profile reliability is Supported, but HPA cautions that the target may include protein from more than one gene and that external verification is pending (HPA: antibody and tissue IHC). |
| Processing and epitope uncertainty (UniProt O60262) | UniProt annotates a mature chain at residues 2–65 and a 66–68 propeptide, but the supplied record gives no antibody epitope. These annotations cannot establish whether processing changes this antibody's IHC signal (UniProt O60262 processing). |
| IF/ICC evidence (HPA: subcellular and antibody records) | HPA supplies no ICC-IF images or main ICC-IF location, and lists no ICC validation for HPA057790. The reported REH RNA value, 48.7 nTPM, does not establish an IF staining pattern (HPA: subcellular; HPA: antibody record). |
| Situation | Likely cause | Next action |
|---|---|---|
| Caudate neurons are unstained despite an otherwise completed IHC run (HPA: caudate High). | The run may have lost sensitivity, or the sampled section may not contain the expected neuronal population; neither possibility establishes target absence (standard IHC practice). | Confirm tissue identity and section quality, then review the positive control, retrieval conditions, primary incubation and detection controls in the IHC workflow (standard IHC practice). |
| Chromogen appears mainly in nuclei (UniProt O60262: cell membrane). | The compartment conflicts with the annotated GNG7 location; nonspecific primary binding or detection background is possible (UniProt O60262; standard IHC practice). | Compare with a detection-only control and inspect whether the caudate neuronal pattern remains after routine background checks; do not score nuclear-only signal as confirmed GNG7 (standard IHC practice). |
| Adipocytes stain strongly (HPA: adipocytes Not detected). | The pattern conflicts with the reported adipocyte result. Cross-reactivity or endogenous detection activity may contribute, particularly given HPA's multiple-gene-target caution (HPA: tissue IHC reliability; standard IHC practice). | Inspect cell identity and control sections; check endogenous enzyme blocking when enzyme-based chromogenic detection is used, and compare with the caudate positive pattern (standard IHC practice; HPA: caudate High). |
| Diffuse color obscures cell boundaries throughout the section (HPA: caudate neuronal pattern). | Excess background can arise from staining or detection conditions; the supplied sources do not identify a GNG7-specific cause (standard IHC practice). | Review blocking, washes, primary concentration and detection-only controls, then score only cellular signal that remains distinguishable from background (standard IHC practice). |
| Only a weak signal appears in cerebral-cortex neuropil (HPA: Low in cerebral-cortex neuropil). | Low signal there agrees with the reported observation and is a weak basis for judging assay failure on its own (HPA: tissue IHC). | Compare the same run with caudate neuronal cells, the reported High population, before changing IHC conditions or calling the assay negative (HPA: tissue IHC). |
| Can an IF/ICC image be used here to confirm the GNG7 compartment? (HPA: subcellular record). | HPA provides no ICC-IF images or main ICC-IF location, and lists no ICC validation for the cited antibody (HPA: subcellular and antibody records). | Treat IF/ICC localization as unverified by this evidence; use this page's caudate IHC pattern for the tissue interpretation and consult a separately validated IF/ICC guide for IF design (HPA: tissue IHC; HPA: subcellular record). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data. Caution, targets protein from more than one gene. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
These questions address GNG7 staining in paraffin sections with chromogenic detection, with one question on interpreting a related IF experiment.
A10690-1 has IHC images from human bladder cancer, liver cancer, and renal carcinoma paraffin sections (A10690-1 IHC image captions). Catalog reactivity includes human, mouse, and rat (A10690-1 catalog).
A10690-1 is listed for IHC and has images of human bladder cancer, liver cancer, and renal carcinoma paraffin sections (A10690-1 catalog; IHC image captions). Its listed reactivity is human, mouse, and rat, while the pictured IHC samples are human (A10690-1 catalog; IHC image captions).
Which to pick: Choose A10690-1 for human paraffin-section IHC; its captions report EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody, but do not report the fixative (A10690-1 IHC image captions). No IF/ICC application or IF image is provided, so this payload does not establish an IF/ICC choice (A10690-1 catalog). A10690-1 lists mouse and rat reactivity, but cross-species tissue IHC needs verification because its IHC images show human samples only; the antibody is rabbit-hosted, with no clone specified (A10690-1 catalog; IHC image captions).