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- Table of Contents
Plan chromogenic IHC for GSR in paraffin sections using the catalog antibody's documented conditions (datasheet: A01479-1). Compare staining with the widespread cytoplasmic and nuclear tissue pattern (HPA tissue IHC), while treating nuclear localisation cautiously because external data contradict it (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and nuclear tissue staining (HPA tissue IHC); mitochondrial localisation (UniProt) | |
| Staining pattern | Widespread cytoplasmic and nuclear staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01479-1) | |
| Positive control | Epididymis+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Nuclear staining needs independent verification (HPA tissue IHC) | |
| Regulation | No expression regulator annotated (UniProt) | |
| Isoform / epitope | Five isoforms; check which epitopes the antibody covers (UniProt) |
Compare the catalog antibody’s EDTA pH 8.0 IHC protocol (datasheet: A01479-1) with two published mouse lung GSR protocols (PMC12133717; PMC2634824).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet A01479-1) |
| Fixation | Image fixative and duration unreported (datasheet A01479-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01479-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01479-1) |
| Primary antibody | Rabbit anti-GSR, 2-5μg/ml (datasheet A01479-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01479-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01479-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GSR-positive staining in glandular cells of epididymis (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic and nuclear expression. No signal in the no-primary control. |
GSR is a soluble protein associated with the cytoplasm and mitochondria, with no transmembrane segment (UniProt P00390). In paraffin sections, expect cytoplasmic staining in glandular cells of epididymis and fallopian tube, where HPA reports high staining (HPA tissue IHC). HPA also describes a ubiquitous cytoplasmic and nuclear profile, but rates its IHC evidence Approved with medium consistency and a subcellular location contradicted by external data (HPA tissue IHC).
| Glandular cells show clear cytoplasmic chromogen in epididymis or fallopian tube. | This fits the reported high staining in those cells (HPA tissue IHC) and GSR's cytoplasmic localization (UniProt P00390). Score the glandular cells themselves and compare signal with adjacent tissue background. |
| Signal is mainly nuclear, or forms a sharp outline around cells. | HPA describes nuclear staining in tissue but flags a subcellular conflict (HPA tissue IHC). A nuclear-dominant pattern alone is therefore inconclusive; a crisp cell-surface outline also conflicts with the lack of a transmembrane segment (UniProt P00390). Review controls before assigning either pattern to GSR. |
| Cells expected to be unstained show strong chromogen, especially where nearby glandular cells also stain. | Adipocytes and cardiomyocytes are reported as not detected in their respective tissues (HPA tissue IHC). Strong signal in those cells warrants checks for antibody cross-reactivity or endogenous chromogenic detection activity; a tissue-level negative call would overstate the cell-specific HPA observation. |
| Pale, diffuse color covers cells and extracellular areas with little separation between them. | Poor contrast prevents a reliable cell-level interpretation. Treat widespread haze as possible assay background, including nonspecific antibody binding or detection activity, and compare it with a section processed without primary antibody (general IHC practice). |
| No staining appears in glandular cells of an epididymis or fallopian tube section. | That result conflicts with the high staining reported for those cells (HPA tissue IHC). Check section integrity, the antibody's IHC-P instructions, detection reagents and a working positive control before interpreting other negative areas as true absence (general IHC practice). |
| Which cells provide an interpretable contrast? | Epididymal and fallopian-tube glandular cells are high; adipocytes and cardiomyocytes are not detected in their listed tissues (HPA tissue IHC). Compare named cell types, not entire organs. |
| How should nuclear chromogen be weighed? | HPA reports cytoplasmic and nuclear tissue staining yet notes an externally contradicted subcellular location (HPA tissue IHC). UniProt lists cytoplasm and mitochondrion (UniProt P00390); nuclear-only staining needs independent support. |
| Do all GSR forms imply one fine-scale pattern? | UniProt lists mitochondrial and cytoplasmic isoforms among five forms (UniProt P00390). A cytoplasmic signal is compatible with GSR; this record does not establish which isoform an IHC antibody recognizes or whether chromogen resolves mitochondria. |
| Does the protein's topology predict a membrane rim? | No transmembrane segment is annotated (UniProt P00390). A strong, continuous cell-surface rim is therefore unexpected for GSR and should be checked against background and antibody specificity. |
| How strong is the antibody-based tissue evidence? | Two listed antibodies have Approved IHC status, while one has no listed IHC status (HPA antibodies). The tissue profile itself has medium staining–RNA consistency and pending external verification (HPA tissue IHC); interpret discordant compartments cautiously. |
| IF/ICC: what localization is reported? | HPA reports mainly cytosol, with additional endoplasmic-reticulum localization, in ICC-IF (HPA subcellular). This is context for comparing localization; IF/ICC workflow belongs in its separate guide. |
| Situation | Likely cause | Next action |
|---|---|---|
| Expected glandular-cell signal is absent. | A failed staining run or unsuitable working conditions are possible (general IHC practice); HPA reports high signal in these cells (HPA tissue IHC). | Confirm the named cells are present, run a known-positive section and follow the IHC-validated antibody's documented IHC-P procedure. Check detection reagents before drawing a biological conclusion (general IHC practice). |
| Nuclear signal dominates with little cytoplasmic staining. | HPA describes nuclear tissue staining but flags its subcellular assignment as contradicted by external data (HPA tissue IHC); cytoplasm and mitochondrion are listed by UniProt (UniProt P00390). | Record nuclear and cytoplasmic scores separately. Compare the pattern across positive tissues and controls; avoid calling nuclear-only signal confirmed GSR localization. |
| A uniform membrane rim or unrelated cell population stains strongly. | GSR has no annotated transmembrane segment (UniProt P00390). Antibody cross-reactivity or nonspecific detection is possible (general IHC practice). | Compare cell types with HPA's cell-specific observations, include a no-primary control and reassess specificity if the unexpected pattern persists (HPA tissue IHC; general IHC practice). |
| Brown haze obscures cell boundaries. | Nonspecific antibody binding or chromogenic detection background can reduce contrast (general IHC practice). | Inspect the no-primary control, confirm blocking and washes, and optimize antibody concentration within its documented IHC-P guidance (general IHC practice). Score only resolved cellular signal. |
| Chromogen appears even without primary antibody. | Endogenous activity or nonspecific detection-reagent binding may generate color (general IHC practice). | Address the detection system's endogenous-activity block and reagent controls, then repeat the comparison with primary antibody (general IHC practice). Do not count control-matched color as GSR. |
| A presumed negative tissue contains some positive cells. | HPA's not-detected entries name particular cells, such as adipocytes or cardiomyocytes, rather than every cell in an organ (HPA tissue IHC). | Identify and score the exact cell type before declaring a discrepancy. If the named negative cells stain, compare their intensity and distribution with positive tissue and controls (HPA tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Medium consistency between antibody staining and RNA expression data. Subcellular location is contradicted by external data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Fallopian tube | Glandular cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s tissue staining conditions as the IHC starting point, then check compartment, cell type and controls before interpreting GSR signal.
The IHC-validated anti-GSR antibody has paraffin-section images from human lung, tonsil, rectal, and thyroid samples (catalog IHC captions) and an IF image from A549 cells (catalog IF caption).
A01479-1 has IHC images from paraffin sections of human lung cancer, tonsil, rectal cancer, and thyroid cancer (catalog IHC captions). Its IF/ICC image uses A549 cells (catalog IF caption), and its listed reactivity is Human, Mouse, and Rat (catalog applications and reactivity).
Which to pick: Choose A01479-1 for tissue IHC: its human paraffin-section images used EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody (catalog IHC captions); the fixative is unreported (catalog IHC captions). For IF/ICC, A01479-1 has an A549 cell image using 5 μg/ml primary antibody (catalog IF caption). For mouse or rat samples, A01479-1 lists both species as reactive, while the supplied IHC images show human samples (catalog reactivity; catalog IHC captions).