This website uses cookies to ensure you get the best experience on our website.
- Table of Contents
Plan GSTK1 paraffin IHC around granular cytoplasmic tissue staining (HPA tissue IHC). This guide covers the catalog antibody’s 1:50 starting dilution and tissue comparisons, including smooth muscle cells with no detected staining (datasheet: M06112-1; HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm (HPA tissue IHC); peroxisome (UniProt) | |
| Staining pattern | Granular cytoplasm across diverse cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M06112-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Smooth muscle |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Smooth muscle cells have no detected staining (HPA tissue IHC) | |
| Regulation | No specific expression regulator reported (UniProt) | |
| Isoform / epitope | 4 isoforms; epitope coverage is unknown (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet M06112-1) and a published GSTK1 protocol for head and neck squamous cell carcinoma tissues (PMC10020208) provide chromogenic IHC starting points.
| Sample | Paraffin-embedded human breast cancer tissue; fixative not specified (datasheet M06112-1) |
| Fixation | Image fixative and duration unreported (datasheet M06112-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M06112-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M06112-1) |
| Primary antibody | Rabbit monoclonal (clone 21G63) anti-GSTK1, 1:50 (datasheet M06112-1) |
| Primary incubation | Overnight at 4 °C (datasheet M06112-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M06112-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | GSTK1-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Ubiquitous granular cytoplasmic expression. No signal in the no-primary control. |
GSTK1 should appear as granular cytoplasmic staining consistent with peroxisomes, rather than a nuclear or membrane pattern (HPA tissue IHC; HPA ICC-IF; UniProt Q9Y2Q3 topology). Expression is widespread, with high staining reported in adrenal glandular cells, bronchial respiratory epithelium, and cortical glia (HPA tissue IHC). Treat the pattern as a supported expectation, not a definitive diagnostic rule: HPA reports medium agreement between staining and RNA data, pending external verification (HPA tissue IHC).
| Granular cytoplasmic signal in adrenal glandular cells or bronchial respiratory epithelial cells. | This fits the reported high staining in these cells and the peroxisomal location (HPA tissue IHC; HPA ICC-IF). Judge granularity and cell identity alongside intensity; nearby cells need not stain equally. |
| Predominantly nuclear, crisp plasma-membrane, or extracellular staining. | These compartments do not match the supported peroxisomal pattern (HPA ICC-IF; UniProt Q9Y2Q3 topology). Check whether the signal persists in a detection-only control before interpreting it as GSTK1. |
| Strong staining assigned to smooth muscle cells. | HPA reports GSTK1 as not detected in smooth muscle cells (HPA tissue IHC). Recheck cell identification and compare a primary-antibody omission control; cross-reactivity or endogenous detection activity may explain discordant staining. |
| Uniform chromogen haze across cells and extracellular areas. | A field-wide haze obscures the granular cytoplasmic pattern reported by HPA (HPA tissue IHC). In general IHC practice, review blocking, washes, antibody concentration, and the detection-only control before scoring cells. |
| No visible signal in an adequately preserved section of adrenal gland or bronchus. | Absence conflicts with the reported high staining in the specified cells (HPA tissue IHC). Check that those cells are present, then review the catalog antibody's IHC-P conditions and detection controls; one blank section does not establish absent GSTK1. |
| Tissue and cell selection | GSTK1 is ubiquitous by UniProt, while HPA reports high, low, and undetected staining in different cell types (UniProt Q9Y2Q3; HPA tissue IHC). Select and score the named cells, rather than assigning one intensity to an entire tissue. |
| Pattern confidence | The tissue pattern is Supported, with medium agreement between antibody staining and RNA and external verification pending (HPA tissue IHC). Use the reported pattern as a reference and interpret unexpected results with controls. |
| Antibody evidence | HPA006311 and HPA022904 each have Supported IHC status; HPA022904 also has Supported ICC status (HPA antibodies). These ratings support the stated applications, but do not validate an unlisted reagent or dilution. |
| Compartment and topology | UniProt places GSTK1 in peroxisomes and annotates no transmembrane segment; HPA ICC-IF also supports peroxisomes (UniProt Q9Y2Q3 topology; HPA ICC-IF). Expect intracellular granules, without claiming that each chromogenic punctum identifies one organelle. |
| Isoforms and processing | UniProt lists four isoforms, one annotated chain spanning residues 1–226, and no signal peptide or propeptide (UniProt Q9Y2Q3). The payload gives no antibody epitope, so it cannot establish which isoforms the IHC reagent detects. |
| What should IF/ICC show? | Peroxisomal localization is supported, with ICC-IF images listed for A-431, U-251MG, and U2OS (HPA ICC-IF). That is a localization cross-check; this IHC section does not supply an IF/ICC protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| No staining in adrenal glandular cells or bronchial respiratory epithelium. | These cells are reported High (HPA tissue IHC); the missing signal could reflect cell selection or an IHC workflow failure, rather than proven absence of GSTK1. | Confirm the named cells on the section. Review the catalog antibody's IHC-P instructions, including its specified retrieval and dilution, then check detection reagents with an appropriate positive control (general IHC practice). |
| Only weak signal in a tissue expected to be high. | HPA levels describe particular cells, and its tissue pattern has medium staining–RNA agreement (HPA tissue IHC). Whole-section scoring may dilute a focal high-cell result. | Score the reported cell population directly and compare it with a known high-staining cell population on a comparable section (HPA tissue IHC); review routine IHC controls before changing conditions. |
| Smooth muscle appears strongly positive. | That cell type is reported Not detected (HPA tissue IHC); mistaken cell assignment, cross-reactivity, or endogenous chromogenic activity are possible. | Verify morphology and compare primary-antibody omission and detection-only controls (general IHC practice). Treat a persistent granular signal as discordant with HPA, rather than automatically declaring it false. |
| Nuclei or cell borders dominate the image. | Dominant nuclear or membrane staining conflicts with the supported peroxisomal location and absence of a transmembrane segment (HPA ICC-IF; UniProt Q9Y2Q3 topology). | Check the counterstain and chromogen separately, then inspect a detection-only control and a reported high-staining cell population (general IHC practice; HPA tissue IHC). |
| Diffuse brown background prevents cell-level scoring. | Field-wide signal can arise from nonspecific binding or endogenous detection activity in chromogenic IHC (general IHC practice); it does not establish GSTK1 distribution. | Review blocking, washes, antibody dilution, and the detection-only control under the chosen IHC detection system (general IHC practice). Score only when cellular granules are distinguishable. |
| A low-staining cell type looks as strong as a reported high-staining type. | HPA reports low staining in oral squamous epithelium and high staining in adrenal glandular cells, with medium overall staining–RNA agreement (HPA tissue IHC). | Compare the identified cell types under the same scoring criteria, inspect background controls, and record the discrepancy (general IHC practice; HPA tissue IHC). Do not infer a GSTK1-specific fixation effect from it. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Caudate | Glial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Smooth muscle | Smooth muscle cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot GSTK1 staining in chromogenic paraffin-section IHC using the catalog antibody’s tissue example and independent localisation evidence.
Both antibodies have paraffin-section IHC images from human breast cancer tissue (catalog image captions); A06112-3 also has mouse and rat heart IHC images and a human breast cancer IF image (catalog image captions).
M06112-1 has IHC images from human breast and prostate cancer paraffin sections; its listed reactivity is Human (M06112-1 catalog). A06112-3 has IHC images from human breast cancer and mouse and rat heart paraffin sections, plus a human breast cancer IF image (A06112-3 catalog image captions).
Which to pick: For human tissue IHC, choose the rabbit monoclonal M06112-1 at 1:50 using its documented EDTA pH 8.0 retrieval as a starting point (M06112-1 catalog and IHC caption). For IF/ICC, M06112-1 lists both applications, while A06112-3 lists IF and has a human tissue IF image (catalog applications; A06112-3 IF caption). For mouse or rat tissue IHC, choose A06112-3, which lists both species and shows heart-section IHC at 2 μg/ml after EDTA pH 8.0 retrieval; the fixative is unreported in both SKUs’ paraffin-section IHC captions (A06112-3 catalog and IHC captions; M06112-1 IHC caption).