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- Table of Contents
Plan chromogenic HAS1 IHC on paraffin sections using the catalog antibody and tissue controls selected from the reported staining profile (HPA tissue IHC). Interpret cytoplasmic staining (HPA tissue IHC) alongside membrane topology (UniProt) and the reported low consistency between antibody staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC); membrane protein (UniProt) | |
| Staining pattern | Cytoplasmic adipocytes, endothelial and smooth muscle cells; ECM (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A04784-1) | |
| Positive control | Adipose tissue+3 more · see all | |
| Negative control | Adrenal gland+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A04784-1) | |
| Caveat | Antibody staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | No specific expression regulator annotated (UniProt) | |
| Isoform / epitope | No isoforms or processing annotated; epitope side matters (UniProt) |
The catalog antibody’s IHC-P protocol is paired with four published HAS1 IHC protocols using paraffin tissue sections (PMC3166775; PMC12093883; PMC11764198; PMC6023397).
| Sample | Paraffin-embedded human mammary cancer tissue; fixative not specified (datasheet A04784-1) |
| Fixation | Image fixative and duration unreported (datasheet A04784-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A04784-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04784-1) |
| Primary antibody | Rabbit anti-HAS1, 1:100–1:500 starting range (standard) |
| Primary incubation | Overnight at 4 °C (datasheet A04784-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A04784-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HAS1-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in adipocytes, extracellular matrix, endothelial cells and smooth muscle cells. No signal in the no-primary control. |
HAS1 is a seven-pass membrane protein (UniProt Q92839 topology). In tissue IHC, expect staining in adipocytes, extracellular matrix, endothelial cells and smooth muscle cells (HPA tissue IHC). Adipose adipocytes and testis peritubular cells show high staining (HPA tissue IHC). Interpret this pattern cautiously: HPA rates the tissue staining Approved but reports low consistency with RNA expression (HPA tissue IHC).
| Adipocytes stain strongly in adipose tissue; testis peritubular cells also stain strongly (HPA tissue IHC). | These are useful reference patterns for the IHC-validated antibody (HPA tissue IHC). Judge signal in the identified cells rather than expecting every cell in either section to stain. HPA reports high staining for those specific cell populations (HPA tissue IHC). |
| Signal outlines cells or appears cytoplasmic; some signal follows extracellular matrix (HPA subcellular ICC-IF; HPA tissue IHC). | A membrane-associated pattern fits HAS1's seven transmembrane segments (UniProt Q92839 topology). HPA describes cytoplasmic and extracellular-matrix staining in tissue IHC, while its ICC-IF data support plasma-membrane localization (HPA tissue IHC; HPA subcellular ICC-IF). Interpret the compartments in the context of the assay used. |
| Strong nuclear-only staining dominates an IHC section (HPA tissue IHC comparison). | Treat it as a discordant IHC pattern and investigate nonspecific signal or scoring error (HPA tissue IHC; general IHC practice). Nuclear staining alone is not proof of artefact: HPA separately lists nucleoplasm as an additional ICC-IF location, with Approved status (HPA subcellular ICC-IF). |
| Adrenal glandular cells or bone-marrow hematopoietic cells stain prominently (HPA tissue IHC comparison). | HPA reports HAS1 as not detected in these cell populations (HPA tissue IHC). Prominent signal warrants checking cell identity, background and antibody specificity (general IHC practice). It cannot by itself establish cross-reactivity, especially given HPA's low staining-to-RNA consistency rating (HPA tissue IHC). |
| The entire section has diffuse color, or adipose adipocytes have no visible signal (HPA tissue IHC comparison). | Diffuse color that obscures cell boundaries can reflect background from detection or blocking steps (general IHC practice); do not automatically reject structured matrix staining described by HPA (HPA tissue IHC). An absent adipocyte signal conflicts with HPA's high adipocyte staining and calls for control review (HPA tissue IHC). |
| Membrane topology and epitope access (UniProt Q92839 topology) | HAS1 has seven transmembrane segments and cytoplasmic and extracellular regions (UniProt Q92839 topology). The antibody epitope is unspecified here, so topology alone cannot justify a particular retrieval condition or predict staining intensity. |
| Choice of reference tissue and cell (HPA tissue IHC) | HPA reports high staining in adipose adipocytes and testis peritubular cells, but low staining in ovarian stromal cells (HPA tissue IHC). Score the named cell population; tissue-wide positivity would overstate the evidence. |
| Tissue-IHC reliability (HPA tissue IHC; HPA antibodies) | The tissue profile is Approved yet has low consistency with RNA expression; antibody HPA067602 has IHC status Approved (HPA tissue IHC; HPA antibodies). A plausible pattern therefore merits controls and should not be treated as independently confirmed expression. |
| IF/ICC Q&A: Where is HAS1 seen? (HPA subcellular ICC-IF) | HPA lists the plasma membrane as the supported main location and nucleoplasm as an Approved additional location in ICC-IF (HPA subcellular ICC-IF). This answers the localization question; the ICC-IF observation does not set an IHC-P protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| No staining in adipose adipocytes, the high HPA reference population (HPA tissue IHC). | The run may have lost detectable signal, or the sampled cells may have been misidentified (general IHC practice). HPA's Approved rating does not guarantee positivity in every section (HPA tissue IHC). | Verify adipocyte identity and section quality, then review the catalog antibody's IHC-P instructions, detection reagents and a run control (general IHC practice). Record the negative finding if controls pass. |
| Strong staining appears in adrenal glandular cells, listed as not detected (HPA tissue IHC). | Cell misidentification, nonspecific binding or detection background may explain a mismatch (general IHC practice); HPA's low RNA-to-staining consistency limits certainty (HPA tissue IHC). | Compare the morphology and staining with an HPA-positive cell population; review antibody and detection controls before calling the adrenal signal HAS1 (HPA tissue IHC; general IHC practice). |
| Color spreads across most of the section and obscures cell borders (general IHC practice). | Diffuse detection background can obscure a specific pattern (general IHC practice). HPA also reports extracellular-matrix staining, so matrix-associated color alone is not evidence of failure (HPA tissue IHC). | Check the detection-only control and the blocking and wash steps; distinguish structured matrix signal from uniform haze before scoring (general IHC practice; HPA tissue IHC). |
| Nuclear-only IHC staining dominates the expected cell pattern (HPA tissue IHC comparison). | The result differs from HPA's tissue description, although nucleoplasm is an additional ICC-IF location (HPA tissue IHC; HPA subcellular ICC-IF). Assay context prevents a definitive artefact call. | Check cell identity, counterstain separation and antibody controls; report the compartment observed without using the ICC-IF result as IHC validation (general IHC practice; HPA subcellular ICC-IF). |
| Ovarian stroma stains weakly despite high ovarian expression in UniProt's tissue summary (UniProt Q92839; HPA tissue IHC). | HPA reports low ovarian stromal-cell staining, while UniProt describes ovary as highly expressed at the tissue level (HPA tissue IHC; UniProt Q92839 tissue specificity). These observations have different scopes. | Score the stromal cells against the HPA IHC observation and use high-staining adipose adipocytes as a clearer IHC reference (HPA tissue IHC). Do not infer a failed run from ovarian stroma alone. |
| Brown chromogen appears in a control lacking primary antibody (general IHC practice). | Endogenous detection activity or a detection-reagent background can produce signal without primary antibody (general IHC practice). This control does not establish HAS1 localization. | Resolve the detection background using the reagent instructions and rerun the control before assigning cell-specific HAS1 staining (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Testis | Peritubular cells | High | Protein (IHC) | HPA → |
| Breast | Adipocytes | Medium | Protein (IHC) | HPA → |
| Smooth muscle | Smooth muscle cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot HAS1 staining in paraffin sections by checking retrieval, compartment, detection background and cell-specific scoring against the supplied evidence.
The catalog antibody has real IHC images from human mammary cancer, human lung cancer, and rat small intestine paraffin sections, plus IF images from U20S cells (catalog image captions).
A04784-1 has IHC images from human mammary cancer, human lung cancer, and rat small intestine paraffin sections (catalog IHC captions). A04784-1 also has IF images from U20S cells and lists Human, Mouse, and Rat reactivity (catalog IF captions; catalog reactivity).
Which to pick: Choose A04784-1 for paraffin-section IHC: its IHC captions document citrate retrieval at pH 6 for 20 minutes and DAB detection; the fixative is unreported (catalog IHC captions). The same SKU lists IF and ICC and has IF images from U20S cells (catalog applications; catalog IF captions). For cross-species planning, it lists Human, Mouse, and Rat reactivity, while its IHC images document human and rat samples; clonality is unreported (catalog reactivity; catalog IHC captions; catalog clone field).