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- Table of Contents
HDGF paraffin IHC shows distinct nuclear staining across tissues (HPA tissue IHC). Start with the IHC-validated antibody at 0.5–1 μg/mL (datasheet A01057), and score nuclear staining consistently across sections (standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining across tissues (HPA tissue IHC) | |
| Staining pattern | Distinct nuclear staining in tissue cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A01057) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Exosomal secretion may complicate tissue interpretation (UniProt) | |
| Regulation | Ubiquitous expression (UniProt) | |
| Isoform / epitope | 3 isoforms; check epitope coverage (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet A01057) with published HDGF staining protocols for synovial tissue (PMC9169164) and endometrial carcinoma (PMC3947826).
| Sample | Paraffin-embedded mouse liver tissues; fixative not specified (datasheet A01057) |
| Fixation | Image fixative and duration unreported (datasheet A01057); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A01057) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01057) |
| Primary antibody | Rabbit anti-HDGF, 0.5-1μg/ml (datasheet A01057) |
| Primary incubation | Overnight at 4 °C (datasheet A01057) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01057) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HDGF-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Distinct nuclear expression in all tissues. No signal in the no-primary control. |
HDGF should show distinct nuclear staining across tissues (HPA: Enhanced tissue IHC; distinct nuclear expression in all tissues), including glandular, hematopoietic, respiratory epithelial, endothelial, and cerebellar granular-layer cells reported as high (HPA: tissue IHC). UniProt also places HDGF in the cytoplasm and inside secreted exosomes; it has no transmembrane segment (UniProt P51858).
| Distinct nuclear staining in glandular cells, such as adrenal gland, appendix, breast, or cervix (HPA: High in these cells). | This matches the dominant tissue pattern (HPA: distinct nuclear expression in all tissues). Compare nuclei within the tissue and score the specified cell population; staining elsewhere alone does not establish the expected pattern. |
| Predominantly membrane-like staining, with little or no nuclear signal in an expected positive cell population. | This conflicts with the observed tissue pattern (HPA: distinct nuclear expression) and lacks support from HDGF topology (UniProt P51858: no transmembrane segment). Check section morphology, detection background, and antibody specificity. Cytoplasmic signal alone is less decisive because UniProt also lists cytoplasm (UniProt P51858). |
| Strong signal in a cell population other than the one being assessed, while its expected nuclei are unstained. | Consider cross-reactivity or endogenous detection activity; verify the cell identity and review controls (general IHC practice). Do not label that population intrinsically HDGF-negative: UniProt calls expression ubiquitous, and the supplied HPA profile lists no negative tissue (UniProt P51858; HPA: tissue IHC). |
| Diffuse color covers nuclei, cytoplasm, and tissue spaces without crisp cellular boundaries. | This cannot be scored as the distinct nuclear pattern (HPA: tissue IHC). Review blocking, washing, antibody concentration, and chromogen development with appropriate controls (general IHC practice); the pattern alone cannot identify which step caused the background. |
| No detectable nuclear signal in a supplied high-staining reference, such as bone-marrow hematopoietic cells (HPA: High). | Treat the run as potentially insensitive before interpreting another sample as negative. Check tissue integrity, retrieval, antibody dilution, and detection reagents (general IHC practice). The supplied record does not establish a negative tissue reference or HDGF-specific retrieval conditions. |
| Antibody validation | HPA048728 and HPA053422 have Enhanced IHC status; CAB026035 is Supported (HPA: antibody validation). Enhanced supports the reported pattern through independent antibodies or orthogonal data; it does not make every stain in a new sample specific. |
| Retrieval and assay settings | Optimize retrieval and dilution against a listed high-staining tissue and appropriate controls (general IHC practice; HPA: High in listed populations). No HDGF-specific retrieval condition, dilution, or fixation sensitivity is supplied; avoid attributing a failed stain to a particular retrieval or fixation effect. |
| Isoforms and epitope coverage | UniProt lists three HDGF isoforms, a PWWP domain at residues 12–69, and several modified residues (UniProt P51858). The supplied sources give no catalog-antibody epitope, so they cannot predict isoform coverage or a modification-dependent staining change. |
| Secreted HDGF and compartment calls | HDGF can occur inside secreted exosomes, and free-protein secretion is proposed (UniProt P51858). HPA nevertheless reports distinct nuclear tissue staining (HPA: tissue IHC). An extracellular-looking deposit alone is insufficient to confirm specific HDGF staining. |
| IF/ICC Q: What localisation should be expected? | A: Nucleoplasmic signal is the principal ICC-IF observation (HPA: Nucleoplasm, enhanced). UniProt additionally lists cytoplasm (UniProt P51858). Use the separate IF/ICC guide for its workflow; the IHC tissue pattern here does not supply an IF protocol. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known high-staining tissue gives no nuclear signal (HPA: High in listed populations). | Insufficient retrieval, overly dilute primary antibody, or failed detection are possible (general IHC practice); the pattern does not distinguish them. | Confirm the expected cell population, then check retrieval and antibody dilution against controls and verify that detection reagents work (general IHC practice). |
| Color appears throughout the section rather than in defined nuclei. | Incomplete blocking or washing, concentrated antibody, or prolonged chromogen development may contribute (general IHC practice). | Review a no-primary control; adjust blocking, washing, dilution, or development one variable at a time (general IHC practice). |
| Unexpected cells stain strongly, but expected nuclei do not. | Cross-reactivity or endogenous detection activity is possible (general IHC practice); HDGF's reported ubiquitous expression prevents a simple negative-cell assumption (UniProt P51858). | Identify the cells morphologically, check no-primary and detection controls, and compare the nuclear pattern with a listed high-staining population (general IHC practice; HPA: tissue IHC). |
| The signal appears mainly at cell borders. | A border-only pattern differs from HPA's nuclear tissue pattern (HPA: tissue IHC) and is unsupported by HDGF topology (UniProt P51858: no transmembrane segment). | Check morphology and background controls; seek reproducible nuclear staining before assigning the border signal to HDGF (general IHC practice; HPA: tissue IHC). |
| A sample has weak nuclear staining relative to a listed high-staining reference. | Sample variation or reduced assay sensitivity may explain the difference; HPA's high calls describe the listed cells, not every specimen (HPA: tissue IHC). | Compare like cell populations and inspect the reference and controls in the same run before scoring intensity (general IHC practice). |
| Extracellular-looking staining is the only positive feature. | Exosomal HDGF is biologically plausible (UniProt P51858), but extracellular color alone does not establish its identity or reproduce HPA's nuclear tissue profile (HPA: tissue IHC). | Assess expected nuclei and background controls first; report the extracellular pattern separately without calling it a confirmed HDGF localisation (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. At least one protein variant secreted, tissue location of RNA and protein might differ and correlation is complex.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: HDGF is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Troubleshoot chromogenic HDGF staining in paraffin sections using the catalog antibody’s tissue example, localisation evidence, and matched controls.
A01057 has real IHC images from human, mouse and rat paraffin sections and IF data from U20S cells (catalog image captions); M01057-1 lists human/mouse IHC and IF applications (catalog applications/reactivity).
A01057 will render with a mouse liver IHC figure; its captions also document rat liver, human intestinal cancer and human lung cancer paraffin sections, plus U20S cell IF (A01057 image captions). M01057-1 will render as a rabbit monoclonal antibody, clone 26H94, listed for human/mouse IHC and ICC/IF, with no IHC or IF image caption supplied (M01057-1 catalog clone/applications/reactivity/image alts).
Which to pick: Choose A01057 for tissue IHC: its own captions show paraffin-section staining in human, mouse and rat samples at 1 μg/ml after citrate retrieval, while the fixative is unreported (A01057 IHC image captions). For IF/ICC, A01057 has a U20S cell IF image at 2 μg/ml; M01057-1 is a rabbit monoclonal option listed for ICC/IF without a supplied IF image (A01057 IF image caption; M01057-1 catalog clone/applications/image alts). For cross-species work, A01057 has documented human, mouse and rat IHC images, whereas M01057-1 lists human and mouse reactivity (A01057 IHC image captions; M01057-1 catalog reactivity).