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- Table of Contents
Plan HK1 paraffin-section IHC using neuronal cells as a high-staining reference and adipocytes as an undetected comparator (HPA tissue IHC). This guide covers fixation consistency, chromogenic detection and cell-level scoring (standard IHC practice).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Granular cytoplasm in tissue (HPA tissue IHC) | |
| Staining pattern | Widespread granular cytoplasmic staining across cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M01504-2) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+1 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific). Selected-image fixative and duration unreported (datasheet M01504-2); verify before use. | |
| Caveat | N-acetyl-D-glucosamine can shift HK1 to the cytosol (UniProt) | |
| Regulation | High in neurons; undetected in adipocytes (HPA tissue IHC) | |
| Isoform / epitope | 4 isoforms; 2 is erythrocyte-specific, 3/4 testis-specific; epitope unspecified (UniProt) |
The catalog antibody’s IHC-P protocol is paired with published HK1 staining conditions from mouse tissue and mink uterus (PMC7658079; PMC4284318).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet M01504-2) |
| Fixation | Image fixative and duration unreported (datasheet M01504-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M01504-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M01504-2) |
| Primary antibody | Mouse monoclonal (clone 4B7) anti-HK1, 0.5-1μg/ml (datasheet M01504-2) |
| Primary incubation | Overnight at 4 °C (datasheet M01504-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet M01504-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HK1-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Ubiquitous cytoplasmic expression with a granular pattern. No signal in the no-primary control. |
In paraffin-section IHC, expect HK1 mainly as granular cytoplasmic staining, with high signal in selected endocrine, epithelial, and neuronal cells (HPA: tissue IHC, Supported; medium consistency with RNA). Its mitochondrial outer-membrane association explains a punctate cytoplasmic pattern; cytosolic HK1 can also occur (UniProt P19367: localization). HK1 has no transmembrane segment (UniProt P19367: topology).
| Granular cytoplasmic staining in cerebral-cortex neurons or bronchial respiratory epithelium. | This fits the reported HK1 tissue pattern and high staining in these cell types (HPA: tissue IHC). Granules are compatible with mitochondrial association (UniProt P19367: localization). Judge the pattern within identified cells, since HPA describes staining across many tissues rather than a uniformly high signal in every cell (HPA: ubiquitous cytoplasmic profile; low tissue specificity). |
| Predominantly nuclear staining, with little cytoplasmic signal. | A nuclear-only result conflicts with the reported granular cytoplasmic IHC pattern and mitochondrial localization (HPA: tissue IHC; HPA: subcellular ICC-IF). Treat it as a possible staining artefact and review the matched control section, counterstain, and detection conditions (general IHC practice). Nuclear color alone does not establish HK1 localization. |
| Strong staining in adipocytes or chondrocytes while expected positive cells stain weakly. | HPA reports HK1 as not detected in adipocytes and chondrocytes in its sampled tissues (HPA: tissue IHC). Unexpected color in those cells warrants checks for antibody cross-reactivity or endogenous detection activity (general IHC practice). These cell-level observations must not be read as a claim that every cell in adipose or soft tissue is negative. |
| Broad, hazy color across cells and surrounding tissue, obscuring cytoplasmic granules. | This is hard to reconcile with HPA's granular cytoplasmic pattern (HPA: tissue IHC). Excess detection background or nonspecific antibody binding are possibilities (general IHC practice). Compare a no-primary control and examine whether color follows cell boundaries; a diffuse deposit is insufficient evidence for HK1 even in a tissue with reported positive cells. |
| No signal in a section containing recognizable cerebral-cortex neurons or bronchial respiratory epithelium. | Those cell types show high HK1 staining in HPA tissue IHC (HPA: cerebral cortex neuronal cells; bronchus respiratory epithelial cells). First confirm that the expected cells are present and assess the run controls (general IHC practice). A negative section cannot distinguish a technical failure from a sample-specific biological difference without a working positive control. |
| Compartment and distribution | HK1 associates with the mitochondrial outer membrane and can relocate to the cytosol (UniProt P19367: localization). HPA describes granular cytoplasmic tissue staining (HPA: tissue IHC); a strictly nuclear pattern therefore needs investigation, while some less punctate cytoplasmic signal need not be excluded solely by shape. |
| Cell-specific comparison | HPA reports high staining in appendix endocrine cells, esophageal squamous epithelium, and hippocampal neurons, but low staining in liver cholangiocytes and pancreatic exocrine cells (HPA: tissue IHC). Score the named cell population rather than treating the whole tissue as one intensity category. |
| Isoforms and antibody epitope | UniProt lists four HK1 isoforms, including an erythrocyte-specific isoform 2 and testis-specific isoforms 3 and 4 (UniProt P19367: isoforms; tissue specificity). The supplied evidence gives no epitope or isoform coverage for the chosen antibody, so staining cannot be assigned to a particular isoform from location alone. |
| Strength of pattern evidence | HPA rates the tissue pattern Supported, with medium consistency between staining and RNA data; its three listed antibodies have IHC Supported status (HPA: tissue IHC; antibody validation). Use the pattern as a reference, while assessing the actual reagent and controls used in this experiment (general IHC practice). |
| IF/ICC: what localization is expected? | HPA reports enhanced mitochondrial localization by ICC-IF (HPA: subcellular ICC-IF). That observation supports the cytoplasmic-granule interpretation in IHC, but it does not specify an IF/ICC protocol or prove that every chromogenic granule is a mitochondrion (HPA: tissue IHC; subcellular ICC-IF). |
| Situation | Likely cause | Next action |
|---|---|---|
| No color in a known-positive cell population. | The result conflicts with high staining reported for cerebral-cortex neurons or bronchial respiratory epithelium (HPA: tissue IHC); a run failure remains possible (general IHC practice). | Confirm the cell population on the counterstained section, inspect the positive control, and verify the IHC-validated antibody and detection steps used for this run (general IHC practice). |
| Granules are faint but the positive control works. | Intensity varies by cell type: HPA reports low staining in cholangiocytes and pancreatic exocrine cells versus high staining in selected neuronal and epithelial cells (HPA: tissue IHC). | Compare like cell types and score localization alongside intensity; avoid calling a low-staining population negative solely because it is weaker than a high-staining control (HPA: tissue IHC). |
| Color is mainly nuclear. | Nuclear-dominant color conflicts with HPA's granular cytoplasmic IHC pattern and mitochondrial ICC-IF localization (HPA: tissue IHC; subcellular ICC-IF). | Check the no-primary control and whether the counterstain or chromogen is being misread; repeat interpretation using cytoplasmic signal in a known-positive cell population (general IHC practice; HPA: tissue IHC). |
| Adipocytes or chondrocytes stain strongly. | HPA reports these sampled cell types as not detected (HPA: tissue IHC). Cross-reactivity or endogenous detection activity may explain unexpected color (general IHC practice). | Review a no-primary control and detection-system controls, then compare the unexpected cells with a documented positive population on the same run (general IHC practice; HPA: tissue IHC). |
| Diffuse color masks cellular detail. | A widespread deposit does not match the reported granular cytoplasmic pattern (HPA: tissue IHC); nonspecific binding or detection background may contribute (general IHC practice). | Inspect a no-primary control, blocking and wash conditions, and detection exposure; score HK1 only where cellular cytoplasmic staining is distinguishable (general IHC practice; HPA: tissue IHC). |
| A tissue section contains both positive and apparently negative cells. | HPA reports cell-specific staining levels within tissues and an overall ubiquitous cytoplasmic profile, not identical intensity in all cells (HPA: tissue IHC). | Identify and score each cell population separately. Compare observed compartment and intensity with the matching HPA cell-level entry before labeling the entire section discordant (HPA: tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
Troubleshoot HK1 staining in paraffin sections by checking retrieval, cell type, cytoplasmic pattern and controls before comparing signal intensity (datasheet M01504-2; HPA tissue IHC).
Five anti-HK1 antibodies have IHC images from human lung cancer or carcinoma, mouse brain, and rat stomach; catalog reactivity includes human, mouse, and rat, and IF images are also available (catalog image captions; catalog reactivity).
M01504-2 and M01504-1 show paraffin-section IHC in human lung cancer, while A01504-1 shows paraffin-section IHC in mouse brain (respective IHC captions). A01504-2 shows IHC in rat stomach, and M01504 shows paraffin-section IHC in human lung carcinoma (respective IHC captions).
Which to pick: For tissue IHC, choose M01504-2 for human lung cancer or A01504-1 for mouse brain: their paraffin-section captions each specify EDTA pH 8.0 retrieval and 1 μg/mL primary antibody overnight at 4°C (respective IHC captions). For IF/ICC, M01504-2 lists both applications and has IF images from cells and a paraffin section of human lung cancer (catalog applications; M01504-2 IF captions). For cross-species IHC, A01504-1 lists human, mouse, and rat reactivity and has IHC images from all three species; its paraffin-section captions do not report the fixative (catalog reactivity; A01504-1 IHC captions).