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- Table of Contents
Plan HNRNPL staining in paraffin sections using the catalog antibody’s chromogenic IHC workflow (datasheet A03769-4). This guide covers the widespread nuclear pattern to expect and how to assess departures from it (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining across tissues (HPA tissue IHC) | |
| Staining pattern | Widespread nuclear staining across cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A03769-4) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Cytoplasmic mRNP granules may add extranuclear signal (UniProt) | |
| Regulation | Low tissue specificity (HPA tissue RNA) | |
| Isoform / epitope | 2 isoforms; epitope differences are unreported (UniProt) |
The catalog antibody uses EDTA pH 8.0 heat retrieval (datasheet A03769-4). The published IHC protocols below describe paraffin sections (PMC12103590; PMC6433863).
| Sample | Paraffin-embedded human breast cancer tissue; fixative not specified (datasheet A03769-4) |
| Fixation | Image fixative and duration unreported (datasheet A03769-4); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A03769-4); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03769-4) |
| Primary antibody | Rabbit anti-HNRNPL, 2-5 μg/ml (datasheet A03769-4) |
| Primary incubation | Overnight at 4 °C (datasheet A03769-4) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A03769-4) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HNRNPL-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Ubiquitous nuclear expression. No signal in the no-primary control. |
HNRNPL should appear mainly in nuclei, with a nucleoplasmic pattern (UniProt P14866 localisation; HPA: ubiquitous nuclear expression). HPA reports high IHC staining in several cell populations, including appendix glandular cells, bone marrow hematopoietic cells, and caudate glial cells (HPA: High in each). Its lack of a transmembrane segment supports an intracellular interpretation (UniProt P14866 topology). HPA rates its tissue IHC pattern Supported, reflecting consistency with RNA expression data (HPA: Supported).
| Nuclear chromogen is clear in appendix glandular cells or bone marrow hematopoietic cells, with identifiable cell boundaries. | This matches the expected compartment and documented high-staining populations (HPA: ubiquitous nuclear expression; HPA: High in appendix glandular cells and bone marrow hematopoietic cells). Judge intensity against cells on the same section; a high HPA category is not a calibrated intensity threshold. |
| Signal is predominantly membranous, or forms a uniform cytoplasmic wash while nuclei remain unstained. | That distribution conflicts with the principal nucleoplasmic pattern (UniProt P14866 localisation; HPA: nucleoplasm). UniProt also records cytoplasmic mRNP granules, so a discrete cytoplasmic focus alone does not prove an artefact (UniProt P14866 localisation). Recheck the assay before assigning compartment-specific staining. |
| Strong chromogen appears chiefly outside the expected cells in an HPA-listed tissue. | Consider antibody cross-reactivity or endogenous detection activity when the mapped high-staining population lacks nuclear signal (HPA: High in the listed cells; general IHC practice). HPA describes ubiquitous nuclear expression and supplies no negative tissue group here, so staining in another cell population is not automatically false (HPA: tissue profile). |
| Brown colour spreads through stroma, lumina, or broad areas without distinct nuclear outlines. | Treat this as background until cellular localisation can be resolved (general IHC practice). Review the no-primary control, blocking and detection conditions, and chromogen development. Diffuse colour alone cannot establish HNRNPL expression, even in a tissue with documented high staining (HPA: tissue IHC profile). |
| An HPA-listed high-staining population shows no convincing nuclear signal. | Check section quality and assay performance before calling the specimen negative (general IHC practice). HPA reports high staining in, for example, adrenal glandular cells and cerebellar granular-layer cells (HPA: High in each); that reference supports a positive-control choice, but does not guarantee staining under every local assay condition. |
| Tissue and cell choice | HPA reports low tissue specificity and no negative tissue group in this payload (HPA: RNA specificity; HPA: tissue IHC). Choose a documented high-staining cell population for a positive control, and compare its nuclear signal with the surrounding section rather than assuming another tissue is a true negative. |
| Antibody validation | The three listed HPA antibodies have Supported IHC status: HPA051748, HPA052661, and CAB016326 (HPA: antibody validation). This supports the reported tissue pattern; it does not establish the performance of a different catalog antibody, dilution, retrieval setting, or detection system. |
| Intracellular distribution | UniProt places HNRNPL in the nucleoplasm and also in cytoplasmic mRNP granules containing untranslated mRNAs (UniProt P14866 localisation). Because HPA describes ubiquitous nuclear IHC expression, score nuclear staining as the principal tissue result (HPA: tissue IHC profile). |
| Isoforms and epitope coverage | UniProt lists 2 isoforms and four RNA-recognition motifs across the protein (UniProt P14866 isoforms; domains). The payload does not map the catalog antibody epitope, so isoform coverage or altered recognition cannot be predicted from these annotations alone. |
| IF/ICC Q&A: where should fluorescence localise? | Predominantly to the nucleoplasm: HPA reports an enhanced nucleoplasmic location in ICC-IF (HPA: subcellular). UniProt also records cytoplasmic mRNP granules (UniProt P14866 localisation). Interpret discrete cytoplasmic foci cautiously; this IHC section makes no IF protocol recommendation. |
| Situation | Likely cause | Next action |
|---|---|---|
| No nuclear staining in a documented positive cell population. | The assay may have failed, or the chosen antibody and local conditions may not yield detectable signal (general IHC practice). HPA tissue intensity alone cannot identify which step failed (HPA: tissue IHC profile). | Verify section integrity and a same-run positive control; then review antibody dilution, antigen-retrieval setting, incubation, detection reagents, and chromogen development against the assay instructions (general IHC practice). |
| Colour is widespread but nuclei cannot be resolved. | Excess detection background, incomplete blocking, or excessive chromogen development can obscure localisation (general IHC practice). | Compare a no-primary control and reduce the background-producing step indicated by that control; keep counterstain light enough to resolve nuclei (general IHC practice). |
| Staining is mainly at tissue edges or in damaged areas. | Section artefact or uneven reagent exposure can create a misleading distribution (general IHC practice). | Inspect intact interior tissue and repeat on a sound section if needed; score HNRNPL only where nuclear outlines are interpretable (general IHC practice; HPA: ubiquitous nuclear expression). |
| A cytoplasmic pattern dominates while nuclei are blank. | The result disagrees with the main nucleoplasmic assignment (HPA: subcellular; HPA: tissue IHC). UniProt's cytoplasmic granules do not by themselves explain uniform cytoplasmic colour (UniProt P14866 localisation). | Check a documented nuclear-positive population and the no-primary control, then review antibody specificity and detection background before reporting cytoplasmic localisation (general IHC practice). |
| Unexpected cells stain strongly in a listed tissue. | Cross-reactivity or endogenous detection activity is possible (general IHC practice), although HPA's ubiquitous nuclear profile prevents treating every additional nuclear-positive cell as erroneous (HPA: tissue IHC profile). | Compare cell identity and compartment with the HPA-listed high-staining population, inspect the no-primary control, and confirm a reproducible nuclear pattern before assigning the signal to HNRNPL (general IHC practice; HPA: tissue IHC). |
| Two antibodies give different distributions. | Their HPA IHC statuses support the listed antibodies individually but do not prove identical epitope recognition or performance in every assay (HPA: antibody validation). | Compare nuclear staining in the same documented positive population under controlled conditions; review each antibody's assay instructions and avoid inferring isoform specificity without epitope data (HPA: tissue IHC; UniProt P14866 isoforms; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Adipocytes | High | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: HNRNPL is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
HNRNPL shows widespread nuclear staining, with nucleoplasmic localisation expected (HPA tissue IHC; HPA subcellular). These questions focus on interpreting and troubleshooting chromogenic paraffin-section IHC.
Both anti-HNRNPL antibodies have IHC images from human paraffin sections and IF images from MCF-7 cells (catalog image captions). Both list Human, Mouse and Rat reactivity (catalog applications/reactivity).
A03769-4 has IHC images from human breast, colorectal, gastric and hepatocellular cancer sections, plus IF images from MCF-7 cells and human colorectal adenocarcinoma sections (A03769-4 image captions). A03769 has IHC images from human breast, colorectal, laryngeal and liver cancer sections, plus an IF image from MCF-7 cells (A03769 image captions).
Which to pick: Either SKU suits paraffin-section chromogenic IHC: each has its own breast-cancer section image showing EDTA retrieval, 2 μg/ml primary antibody and DAB detection; neither caption reports the fixative (A03769-4 and A03769 IHC image captions). For tissue IF, choose A03769-4 because its IF caption shows a human colorectal adenocarcinoma section; for cell IF/ICC, either has an MCF-7 image, with 5 μg/ml primary antibody (A03769-4 and A03769 IF image captions). Both list Human, Mouse and Rat IHC reactivity, while the supplied IHC images show human tissue only; clonality is unreported for both (catalog applications/reactivity and IHC image captions).