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- Table of Contents
Plan HSPB6 staining in paraffin sections using cytoplasmic staining in myocytes and adipocytes as a reference (HPA tissue IHC). Compare matched sections under consistent fixation and account for possible nuclear foci after heat shock (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic signal in myocytes, adrenal cells, stroma and adipocytes (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A07981-1) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | Appendix+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Heat shock may shift signal to nuclear foci (UniProt) | |
| Regulation | PKA phosphorylates Ser16 (UniProt) | |
| Isoform / epitope | One chain, residues 1–160; no annotated isoforms (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 retrieval (datasheet). The published IHC examples below cover rat myocardial injury, lumbar spine specimens, and multiple sclerosis tissue (PMC3459299; PMC11786202; PMC4688967; PMC6194336).
| Sample | Paraffin-embedded human skeletal muscle tissue; fixative not specified (datasheet A07981-1) |
| Fixation | Image fixative and duration unreported (datasheet A07981-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A07981-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A07981-1) |
| Primary antibody | Rabbit anti-HSPB6, 0.5-1μg/ml (datasheet A07981-1) |
| Primary incubation | Overnight at 4 °C (datasheet A07981-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A07981-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HSPB6-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in myocytes, adrenal gland, stromal cells and adipocytes. No signal in the no-primary control. |
HSPB6 should give predominantly cytoplasmic staining in myocytes, adipocytes and selected stromal or glandular cells (HPA: tissue IHC profile). Cytoplasmic localization is consistent with a protein lacking a transmembrane segment (UniProt O14558: topology). Nuclear signal can occur, particularly in foci during heat shock (UniProt O14558: subcellular location). Interpret intensity by cell type: HPA rates its tissue IHC profile Enhanced, while noting medium consistency with RNA expression (HPA: tissue IHC reliability).
| Clear cytoplasmic staining in skeletal myocytes or cardiomyocytes, with restrained background. | This fits the reported High staining in both cell types (HPA: skeletal muscle and heart muscle IHC). Score the target cells and their compartment, since a whole-section intensity score can obscure which cells carry the signal. |
| Strong signal confined to nuclei, or a membrane outline presented as the dominant pattern. | Reassess compartment and controls before calling it HSPB6: cytoplasm is reported in tissue IHC, while nuclear foci are linked to heat shock (HPA: tissue IHC profile; UniProt O14558: subcellular location). A dominant membrane pattern lacks support from the reported topology (UniProt O14558: no transmembrane segment). |
| Strong staining in cells expected to be unstained, such as appendix glandular cells. | Treat this as a specificity or detection concern: those glandular cells are Not detected in the HPA tissue survey (HPA: appendix IHC). Cross-reactivity or endogenous detection activity is possible; compare the stained cell type with a negative reagent control before assigning target expression (general IHC practice). |
| Uniform brown haze across tissue, including spaces between cells or areas without a coherent cell pattern. | This is difficult to interpret as target staining because the reported pattern is cell-associated and mainly cytoplasmic (HPA: tissue IHC profile). Check background in a negative reagent control, then review blocking, washes and chromogen development (general IHC practice). |
| No staining in skeletal muscle myocytes or heart cardiomyocytes. | A blank known-positive cell population conflicts with the HPA High ratings (HPA: skeletal muscle and heart muscle IHC). First check that the cells are present and preserved; then verify the IHC-validated antibody and detection run with controls (general IHC practice). |
| Cell type and comparator tissue | Adipocytes, adrenal glandular cells, endometrial stromal cells, decidual cells and Leydig cells are also rated High (HPA: tissue IHC). Appendix glandular and bone marrow hematopoietic cells are Not detected (HPA: tissue IHC). Compare like cell types rather than treating every cell in a positive organ as positive. |
| IHC evidence strength | The tissue profile is rated Enhanced but has medium consistency with RNA expression; staining also occurs in cells or structures not fully annotated (HPA: tissue IHC reliability). HPA044153, HPA054811 and CAB001974 each have Enhanced IHC validation (HPA: antibody validation). Use these ratings as support, not a substitute for slide-level controls. |
| Compartment and stress state | UniProt places HSPB6 in cytoplasm and nucleus and reports movement to nuclear foci during heat shock (UniProt O14558: subcellular location). A nuclear focus therefore needs context; routine tissue IHC is described chiefly as cytoplasmic (HPA: tissue IHC profile). No transmembrane segment is reported (UniProt O14558: topology). |
| Protein form and epitope claims | UniProt reports one chain spanning residues 1–160, no signal peptide or propeptide, and no listed isoforms (UniProt O14558: processing and isoforms). It also lists phosphoserine at residue 16 and deamidation at residue 66 (UniProt O14558: modified residues). These facts do not establish which epitope an antibody recognizes or predict a staining change. |
| IF/ICC Q&A: what pattern is supported? | In ICC-IF, HPA reports mainly cytosol and mitochondria, with additional nuclear speckles; the respective location assessments are supported or approved (HPA: subcellular). HPA044153 has Supported ICC validation (HPA: antibody validation). Interpret this as ICC-IF evidence, without treating mitochondrial or speckle staining as a required paraffin IHC pattern. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive myocytes are blank. | The run or detection chain may have failed; skeletal myocytes and cardiomyocytes are rated High (HPA: tissue IHC). | Verify tissue identity, the IHC-validated antibody, and positive control development before interpreting the sample as negative (general IHC practice). |
| Myocyte staining is faint or patchy. | The slide may lack a stable comparator; HPA reports High staining in skeletal myocytes and cardiomyocytes (HPA: tissue IHC). | Compare a known-positive section processed in the same run; review section quality, retrieval settings and detection performance without assuming HSPB6-specific retrieval sensitivity (general IHC practice). |
| Appendix glandular cells stain strongly. | The observed cell type conflicts with the HPA Not detected rating; cross-reactivity or endogenous detection activity is possible (HPA: appendix IHC; general IHC practice). | Check a negative reagent control and the staining compartment; repeat specificity assessment with an independently validated IHC antibody if available (general IHC practice). |
| Brown signal appears across most of the section without cell boundaries. | Diffuse background can arise from detection chemistry or inadequate washing (general IHC practice); it does not match the reported cell-associated cytoplasmic profile (HPA: tissue IHC). | Inspect the negative reagent control, washing and chromogen development, then score only reproducible cell-associated signal (general IHC practice). |
| Only nuclei or membrane outlines are prominent. | HSPB6 may enter nuclear foci during heat shock, but routine tissue IHC is chiefly cytoplasmic; no transmembrane segment is reported (UniProt O14558: subcellular location and topology; HPA: tissue IHC). | Record the compartment, check controls and reassess antibody specificity before calling the pattern positive (general IHC practice). |
| Cells within one tissue show different intensities. | HPA rates specific cell populations, not every cell in an organ; its tissue IHC profile also notes incompletely annotated stained structures (HPA: tissue IHC). | Score named cell populations separately and compare their compartments with the HPA entries; keep unannotated structures descriptive rather than assigning them a target-positive identity. |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | High | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | High | Protein (IHC) | HPA → |
| Placenta | Decidual cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
Troubleshoot HSPB6 staining in paraffin sections by checking retrieval, cell type, compartment and detection controls before scoring chromogenic signal.
IHC images show HSPB6 staining in human skeletal muscle and breast carcinoma, rat cardiac muscle, and mouse lung (A07981-1 and A07981S16 image captions); IF images show A431 and HeLa cells (catalog IF image captions).
A07981-1 has paraffin-section IHC images from human skeletal muscle and mammary cancer, rat cardiac muscle, and mouse lung, plus IF data from A431 cells (A07981-1 image captions). A07981S16 has paraffin-section IHC data from human breast carcinoma and IF data from HeLa cells, both with phospho-peptide blocking images (A07981S16 image captions).
Which to pick: For tissue IHC, choose A07981-1 for the imaged human, rat, and mouse paraffin-section examples; choose A07981S16 when the target is HSPB6 phosphorylated at Ser16 (A07981-1 IHC image captions; A07981S16 title and IHC image caption). For IF/ICC, A07981-1 lists both applications and has an A431 IF image; A07981S16 lists IF and has a HeLa IF image (catalog applications and IF image captions). Both list human, mouse, and rat reactivity, but the cited A07981S16 IHC image is human only; neither IHC caption reports the fixative (catalog reactivity; IHC image captions).