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- Table of Contents
Plan paraffin-section IHC for HYOU1 using pancreatic exocrine cells as a high-staining reference (HPA tissue IHC). This guide covers fixation consistency, interpretation of mainly cytoplasmic staining, and the reported mismatch between staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Mainly cytoplasmic staining in tissues (HPA tissue IHC) | |
| Staining pattern | Pancreatic exocrine cells: high, mainly cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A04934-2) | |
| Positive control | Pancreas+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across paraffin sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Up-regulated by hypoxia (UniProt) | |
| Isoform / epitope | 2 isoforms; signal peptide 1–32 is cleaved (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet A04934-2) is paired with a published nasopharyngeal carcinoma IHC protocol (PMC4749358).
| Sample | Paraffin-embedded human gall bladder adenosquamous carcinoma tissue; fixative not specified (datasheet A04934-2) |
| Fixation | Image fixative and duration unreported (datasheet A04934-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A04934-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A04934-2) |
| Primary antibody | Rabbit anti-HYOU1, 1-2 μg/ml (datasheet A04934-2) |
| Primary incubation | Overnight at 4 °C (datasheet A04934-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A04934-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | HYOU1-positive staining in exocrine glandular cells of pancreas (HPA tissue IHC: High). HPA tissue profile: Mainly cytoplasmic expression in several different tissue types. No signal in the no-primary control. |
HYOU1 is a soluble endoplasmic reticulum lumen protein with no transmembrane segment, so staining should appear mainly in the cytoplasm rather than the nucleus or cell surface (UniProt Q9Y4L1: location and topology). Pancreatic exocrine glandular cells are a strong tissue reference (HPA: High). Interpret that reference with care: HPA rates the tissue IHC antibody Approved but reports low consistency between staining and RNA expression (HPA: reliability).
| Cytoplasmic staining is strong in pancreatic exocrine glandular cells, with little nuclear staining (HPA: High in pancreatic exocrine cells; UniProt Q9Y4L1: ER lumen). | This fits the reported cell type and compartment. Score the stained cells and intensity, rather than treating every cell in the section as an expected positive (HPA: tissue IHC; general IHC practice). |
| Staining is predominantly nuclear or sharply confined to the cell surface (UniProt Q9Y4L1: ER lumen; no transmembrane segment). | That distribution conflicts with the annotated location. Treat it as a possible staining or interpretation artifact and compare it with a known-positive section and a primary-antibody omission control (UniProt Q9Y4L1: location; general IHC practice). |
| Adipocytes stain strongly in adipose tissue or breast sections, or hematopoietic cells stain strongly in bone marrow (HPA: Not detected in those specified cells). | These are cell-specific discrepancies, not proof that the entire tissue must be blank. Consider cross-reactivity or endogenous detection activity; inspect an omission control before assigning HYOU1 positivity (HPA: tissue IHC; general IHC practice). |
| Chromogen covers extracellular space, empty areas or many unrelated cell types with similar intensity (general IHC practice). | A widespread, poorly cell-delimited deposit is less persuasive than cytoplasmic staining in the expected cells. Check detection background, blocking and wash steps before scoring it as HYOU1 (HPA: High in pancreatic exocrine cells; general IHC practice). |
| Pancreatic exocrine glandular cells show no signal (HPA: High in pancreatic exocrine cells). | The expected reference pattern has failed. Review the catalog antibody’s IHC-P conditions, section quality and detection controls before interpreting other sections as negative (HPA: tissue IHC; general IHC practice). |
| Antibody evidence (HPA: HPA049296, IHC Approved). | Approved does not mean every tissue result agrees with RNA: HPA reports low staining–RNA consistency, so use morphology and controls when judging unexpected positives or negatives (HPA: reliability description). |
| Cell and tissue choice (HPA: tissue IHC). | Pancreatic exocrine cells are High; neuronal cells in cerebral cortex and hippocampus and several glandular cell groups are Medium. Compare like cell types when setting an intensity reference (HPA: tissue IHC). |
| Negative-reference choice (HPA: tissue IHC). | HPA's Not detected calls name specific cells, including adipocytes and bone-marrow hematopoietic cells. They do not establish that every other cell in those sections is negative (HPA: tissue IHC). |
| Protein form and epitope (UniProt Q9Y4L1: processing and isoforms). | UniProt annotates a cleaved signal peptide at residues 1–32 and two isoforms. The supplied record gives no antibody epitope, so it cannot establish which forms this IHC stain detects (UniProt Q9Y4L1; HPA: HPA049296). |
| Antigen retrieval (general IHC practice). | Use the catalog antibody’s IHC-P conditions as the starting point and assess retrieval with controls. Neither source here establishes an HYOU1-specific fixation or retrieval effect (general IHC practice; UniProt Q9Y4L1; HPA: tissue IHC). |
| IF/ICC Q&A: Is an IF pattern validated here? (HPA: subcellular and antibody records). | No HPA main ICC-IF location or cell-line images are supplied, and HPA049296 has no ICC status. The ER annotation suggests a cytoplasmic expectation, but this IHC evidence does not validate an IF pattern (HPA: subcellular; UniProt Q9Y4L1: location). |
| Situation | Likely cause | Next action |
|---|---|---|
| No staining in a pancreatic reference section (HPA: High in exocrine glandular cells). | The expected reference failed; preparation or detection may have failed, but the image alone cannot identify which step (HPA: tissue IHC; general IHC practice). | Check the catalog antibody’s IHC-P conditions, section quality, detection reagents and a working positive control before scoring study sections (general IHC practice). |
| Strong nuclear staining dominates the section (UniProt Q9Y4L1: ER lumen). | Nuclear dominance conflicts with the annotated compartment and may reflect nonspecific signal or misread counterstain (UniProt Q9Y4L1; general IHC practice). | Compare chromogen with the counterstain, review a pancreatic reference and inspect a primary-antibody omission control (HPA: High in pancreatic exocrine cells; general IHC practice). |
| Unexpected staining appears in HPA-negative reference cells (HPA: Not detected in adipocytes and bone-marrow hematopoietic cells). | Cross-reactivity or endogenous detection activity is possible; the HPA call applies to the named cells (HPA: tissue IHC; general IHC practice). | Confirm cell identity, inspect an omission control and assess the relevant endogenous-activity block before attributing the signal to HYOU1 (general IHC practice). |
| Diffuse chromogen obscures cell boundaries (general IHC practice). | Excess background can arise during blocking, washing or detection; this appearance does not establish target localization (general IHC practice). | Check omission controls, wash steps and detection conditions, then score only cell-delimited staining that remains interpretable (general IHC practice). |
| Staining varies across sections or appears weaker than expected in another tissue (HPA: tissue IHC). | HPA reports different cell-specific levels and low staining–RNA consistency; equal intensity across tissues is not established (HPA: tissue IHC and reliability). | Compare the same cell type where possible, keep scoring criteria consistent and include a pancreatic reference section (HPA: High in pancreatic exocrine cells; general IHC practice). |
| An IF/ICC image appears inconsistent with the IHC result (HPA: ICC status unavailable for HPA049296). | The supplied HPA record has no main ICC-IF location or cell-line images, so it does not establish a validated IF comparison (HPA: subcellular and antibody records). | Judge the paraffin-section result against IHC cell patterns and controls; use the separate IF/ICC guide for IF-specific validation (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Pancreas | Exocrine glandular cells | High | Protein (IHC) | HPA → |
| Cerebral cortex | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Hippocampus | Neuronal cells | Medium | Protein (IHC) | HPA → |
| Seminal vesicle | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot chromogenic HYOU1 IHC in paraffin sections using the catalog antibody’s tissue example, protein annotations, and tissue staining patterns.
The figure-backed HYOU1 antibody has paraffin-section IHC data from human tumors and IF/ICC data from CACO-2 cells (catalog image captions). Human, mouse, and rat reactivity is listed (catalog: A04934-2).
A04934-2 is the SKU with a rendered IHC figure, showing a human gall bladder adenosquamous carcinoma paraffin section (A04934-2 IHC image caption). Its separate IF/ICC image shows CACO-2 cells (A04934-2 IF image caption).
Which to pick: Choose A04934-2 for tissue IHC: its image documents a paraffin section with EDTA pH 8.0 retrieval, while the fixative is unreported (A04934-2 IHC image caption). Choose A04934-2 for IF/ICC because its application list includes both and its IF image shows CACO-2 cells (catalog: A04934-2; A04934-2 IF image caption). For mouse or rat samples, both A04934-2 and rabbit monoclonal M04934-2 list reactivity, but the supplied IHC image evidence for A04934-2 is human only and M04934-2 has no supplied IHC image (catalog: A04934-2, M04934-2).