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- Table of Contents
Plan chromogenic IHC of paraffin sections for ICOSLG using the catalog antibody at 2 μg/mL (datasheet). Compare cytoplasmic tissue staining (HPA tissue IHC) with the expected membrane location (UniProt), bearing in mind the low consistency between antibody staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining observed (HPA tissue IHC); membrane expected (UniProt) | |
| Staining pattern | High cytoplasmic staining in lung macrophages (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6.0 HIER, 95–98 °C, 20 min (rule: cytoplasmic / membrane antigen) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | None in HPA (detected in all 45 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Staining has low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Expression regulation not specified (UniProt) | |
| Isoform / epitope | 3 isoforms; check extracellular vs cytoplasmic epitope (UniProt) |
Compare the catalog antibody’s IHC-P protocol with published ICOSLG IHC methods for tumor tissue microarrays, skin sections, and oral squamous cell carcinoma sections (PMC13239265; PMC13324650; PMC10569602).
| Sample | Tissue sections; selected-image fixative not specified (standard IHC workflow) |
| Fixation | Image fixative and duration unreported (datasheet A01965); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat-induced epitope retrieval in citrate buffer, pH 6.0, 20 min at 95–98 °C (standard rule: cytoplasmic / membrane antigen) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% normal serum of the secondary host, 30 min, room temperature (standard) |
| Primary antibody | Rabbit anti-ICOSLG, 2 μg/mL (datasheet A01965) |
| Primary incubation | Overnight at 4 °C (standard) |
| Detection | HRP-polymer secondary, DAB chromogen 5–10 min (standard) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ICOSLG-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: General cytoplasmic expression. No signal in the no-primary control. |
ICOSLG is a cell membrane protein with an extracellular region at residues 19–256 and a transmembrane segment at 257–277 (UniProt O75144 topology). In tissue IHC, assess staining in cell populations reported by HPA, including lung macrophages and lymph node germinal center cells (HPA: High). HPA also describes general cytoplasmic staining, but rates the tissue profile Approved with low consistency between antibody staining and RNA expression (HPA tissue IHC).
| Distinct staining in lung macrophages or lymph node germinal center cells, with a discernible cell border. | These are useful positive patterns: HPA reports High staining in both populations (HPA tissue IHC). A membrane component fits ICOSLG topology (UniProt O75144 topology). Record the actual compartment seen, since HPA's tissue summary also describes general cytoplasmic expression (HPA tissue IHC). |
| Predominantly nuclear staining, or signal confined to a compartment unrelated to the cell border. | Treat this as a localisation mismatch requiring review: UniProt places ICOSLG at the cell membrane (UniProt O75144 subcellular location). Check morphology, controls and detection conditions before calling it ICOSLG. Cytoplasmic tissue staining alone is less decisive because HPA reports a general cytoplasmic pattern (HPA tissue IHC). |
| Strong, uniform staining in an unexpected cell population while expected positive cells are unstained. | Consider antibody cross-reactivity or endogenous detection activity and compare with appropriate controls (standard IHC practice). Do not reject a population solely because it is absent from UniProt's immune-cell list: HPA also reports High staining in several glandular and neuronal populations (HPA tissue IHC; UniProt O75144 tissue specificity). |
| Diffuse color across cells, stroma and blank spaces, without distinguishable cell boundaries. | This pattern is difficult to score as specific cellular staining (standard IHC practice). Assess background with a no-primary control, then review blocking, detection reagent and chromogen development under the general IHC workflow (standard IHC practice). HPA's reported cytoplasmic profile does not establish that diffuse slide-wide color is specific (HPA tissue IHC). |
| No detectable signal in the tested lung macrophages or lymph node germinal center cells. | These populations have High staining in HPA images, so absent signal warrants a run-level check (HPA tissue IHC). Verify the population is present in the section and review antibody, retrieval and detection conditions against the chosen validated IHC method (standard IHC practice). HPA's low RNA–staining consistency limits any claim that every specimen must stain (HPA tissue IHC). |
| Epitope position and topology | ICOSLG has extracellular residues 19–256, a transmembrane segment at 257–277 and a short cytoplasmic tail at 278–302 (UniProt O75144 topology). The antibody epitope is unspecified here, so topology predicts the protein's location but cannot establish which retrieval condition exposes this antibody's epitope (UniProt O75144 topology; standard IHC practice). |
| Tissue evidence and antibody agreement | HPA rates the tissue IHC profile Approved while noting low consistency between staining and RNA expression (HPA tissue IHC). Its two listed IHC antibodies are individually Approved; neither is listed as IHC Enhanced in the supplied record (HPA antibodies). Use cell-resolved controls when interpreting unexpected positives (standard IHC practice). |
| Processing, glycosylation and isoforms | UniProt lists a signal peptide at residues 1–18, five glycosylation sites and three isoforms (UniProt O75144 processing, glycosylation, isoforms). These features make antibody epitope information relevant to interpretation, but the supplied record gives no epitope, isoform coverage, shedding result or target-specific fixation sensitivity. |
| Antigen retrieval | Choose retrieval conditions from the IHC-validated antibody's method and check the positive control when conditions change (standard IHC practice). Neither HPA's tissue levels nor UniProt's topology demonstrates a particular retrieval requirement or a formalin-induced change in ICOSLG detection (HPA tissue IHC; UniProt O75144 topology). |
| IF/ICC: What localisation should be expected? | HPA lists plasma membrane localisation as supported and vesicles as uncertain; its ICC-IF images include RT-4, SiHa and U2OS (HPA subcellular). This answers the localisation question for IF/ICC without using its images as an IHC protocol or treating uncertain vesicle signal as a required positive feature (HPA subcellular). |
| Situation | Likely cause | Next action |
|---|---|---|
| Known positive population is present, but its IHC signal is absent. | Antibody, retrieval or detection conditions may be inadequate for this run (standard IHC practice). | Check the HPA High population in the section, then review the IHC-validated method and run controls (HPA tissue IHC; standard IHC practice). |
| Only nuclei stain. | A nuclear-only pattern conflicts with the reported cell membrane location (UniProt O75144 subcellular location). | Compare a no-primary control and cell morphology; reassess antibody specificity and detection background (standard IHC practice). |
| All cell types show similar color. | Nonspecific binding or endogenous detection activity may obscure cell-specific staining (standard IHC practice). | Examine no-primary and detection controls, then review blocking and detection conditions (standard IHC practice). |
| Cytoplasmic staining appears without an obvious membrane rim. | HPA reports general cytoplasmic tissue staining, while UniProt places ICOSLG at the membrane (HPA tissue IHC; UniProt O75144). | Document the compartment and cell type; compare with controls before assigning specificity (standard IHC practice). |
| A low-staining comparison tissue looks as intense as a positive population. | Background or a specimen difference may explain the contrast; HPA reports low staining in selected cells (HPA tissue IHC). | Compare matched sections and controls, and score the identified cells rather than whole-section color (standard IHC practice). |
| A proposed IF/ICC image shows mainly vesicle-like puncta. | HPA marks vesicle localisation uncertain and plasma membrane localisation supported (HPA subcellular). | Keep that observation separate from the paraffin IHC call; assess membrane signal and consult the dedicated IF/ICC guide (HPA subcellular). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Caudate | Neuronal cells | High | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Gallbladder | Glandular cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: ICOSLG is detected in all 45 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
Use compartment, cell identity, and matched controls to interpret ICOSLG staining in paraffin sections (UniProt O75144; standard IHC practice).
A01965 has IHC and IF images from human lymph node tissue (catalog image captions); human is the only listed reactivity (catalog: Human).
A01965 is listed for IHC and IF in human samples (catalog: applications and reactivity). Its IHC and IF images each show human lymph node tissue (catalog: IHC and IF image captions).
Which to pick: Choose A01965 for human tissue IHC: its own IHC image shows human lymph node tissue at 2 μg/mL (catalog: IHC image caption). A01965 is also listed for IF, with a human lymph node IF image; ICC validation is unreported (catalog: applications and IF image caption). No cross-species reactivity is listed, and the IHC caption does not report section processing or fixative (catalog: reactivity and IHC image caption).