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- Table of Contents
Plan ILF2 paraffin IHC around the widespread nuclear tissue pattern (HPA tissue IHC). The IHC-validated antibody has a 1:50–1:200 dilution range for evaluating nuclear staining (datasheet M04443-1).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear tissue staining (HPA tissue IHC) | |
| Staining pattern | Nuclear staining across many tissue cell types (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet M04443-1) | |
| Positive control | Adipose tissue+4 more · see all | |
| Negative control | None in HPA (detected in all 44 tissues); use no-primary + isotype controls |
| Fixation | Keep fixation consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Cytoplasmic mRNP granules may add extranuclear signal (UniProt) | |
| Regulation | CRBN promotes ILF2 degradation (UniProt) | |
| Isoform / epitope | No annotated isoforms; one 1–390 chain (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet M04443-1) with three published ILF2 chromogenic IHC protocols (PMC5555027; PMC12540223; PMC9134917).
| Sample | Paraffin-embedded human lung cancer tissue; fixative not specified (datasheet M04443-1) |
| Fixation | Image fixative and duration unreported (datasheet M04443-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet M04443-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet M04443-1) |
| Primary antibody | Rabbit monoclonal (clone 18I48) anti-ILF2, 1:50-1:200 (datasheet M04443-1) |
| Primary incubation | Overnight at 4 °C (datasheet M04443-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet M04443-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | ILF2-positive staining in adipocytes of adipose tissue (HPA tissue IHC: High). HPA tissue profile: Ubiquitous nuclear expression. No signal in the no-primary control. |
ILF2 should show predominantly nuclear staining across many cell types in paraffin sections (HPA: ubiquitous nuclear expression; Supported IHC reliability). HPA reports high staining in adipocytes, hematopoietic cells, glandular cells, respiratory epithelial cells, glial cells and cerebellar granular-layer cells (HPA: tissue IHC). Nucleolar and cytoplasmic localization is also recorded (UniProt Q12905: subcellular location). ILF2 has no transmembrane segment (UniProt Q12905: topology).
| Clear nuclear chromogen in several cell populations, including the sampled HPA high-staining populations. | This fits the expected broad tissue pattern (HPA: ubiquitous nuclear expression; High in the listed cell populations). Compare nuclei within each population against its surrounding cytoplasm when scoring. HPA rates tissue IHC reliability as Supported, with medium consistency between antibody staining and RNA expression (HPA: reliability description). |
| Predominantly cytoplasmic chromogen with little or no nuclear signal in cells expected to stain. | Treat a cytoplasm-only result as questionable because the tissue IHC profile is nuclear (HPA: ubiquitous nuclear expression). Some cytoplasmic localization is biologically plausible (UniProt Q12905: cytoplasm; HPA: additional cytosol in ICC-IF), so assess the relative compartment signals and controls before calling the result an artefact. |
| Strong staining confined to an unexpected cell population while nearby expected nuclei remain unstained. | Consider cross-reactivity or endogenous detection activity and inspect the control slide (general IHC practice). ILF2 has broad nuclear expression, and HPA supplies no negative tissue or low-staining group here (HPA: tissue IHC profile; negative and low lists empty). Cell identity alone therefore cannot establish a false positive. |
| Diffuse chromogen obscures nuclei, fills extracellular areas, or appears evenly across the section. | This prevents a reliable nuclear localization call (general IHC practice). Compare with a no-primary control, then assess blocking, washing and detection conditions as general IHC troubleshooting. Extracellular or uniform haze should not be scored as ILF2-positive nuclei (HPA: ubiquitous nuclear expression). |
| No nuclear signal in a section containing one of the reported high-staining cell populations. | An absent signal conflicts with the reported pattern for that population (HPA: High in the listed tissue-cell pairs). Check section quality and the staining run with a known-positive section before interpreting a biological absence (general IHC practice). HPA's Supported rating does not guarantee identical staining in every specimen (HPA: medium consistency). |
| Compartment (HPA: tissue IHC; UniProt Q12905: subcellular location) | Use nuclear staining as the main paraffin-section readout (HPA: ubiquitous nuclear expression). UniProt also records nucleolar and cytoplasmic localization, including cytoplasmic mRNP granules (UniProt Q12905: subcellular location); those entries do not establish an expected granule pattern in chromogenic tissue IHC. |
| Choice of positive tissue (HPA: tissue IHC) | The payload lists 8 high-staining tissue-cell pairs, including bone-marrow hematopoietic cells and bronchial respiratory epithelial cells (HPA: High). It lists no negative or low-staining pairs (HPA: tissue IHC); use an appropriate positive section and reagent controls rather than presuming a tissue is ILF2-negative. |
| Antibody evidence (HPA: antibody validation) | HPA007484 is Supported for IHC and ICC; HPA072048 is Supported for ICC with no IHC status supplied (HPA: antibody validation). An ICC-supported result does not itself validate a paraffin-section staining pattern (HPA: application-specific status). |
| IF/ICC Q: What localization should be expected? (HPA: subcellular ICC-IF) | A: Mainly nucleoplasm, with additional cytosol, is the supported ICC-IF pattern (HPA: subcellular ICC-IF). This observation can inform compartment interpretation, while the paraffin IHC call remains anchored to the ubiquitous nuclear tissue profile (HPA: tissue IHC). |
| Target structure and sample preparation (UniProt Q12905: topology; general IHC practice) | ILF2 has no signal peptide, propeptide, transmembrane segment or annotated isoforms in this record (UniProt Q12905: processing, topology and isoforms). The payload gives no target-specific antigen-retrieval or fixation-sensitivity evidence; select and check retrieval conditions using the IHC-validated antibody's instructions (general IHC practice). |
| Situation | Likely cause | Next action |
|---|---|---|
| No stain in the positive section. | The staining run or detection step may have failed (general IHC practice); a reported high-staining population should provide a nuclear reference (HPA: High in listed populations). | Confirm the section contains the intended cells, review the IHC-validated antibody's stated conditions, and check detection reagents with a positive control (general IHC practice). |
| Weak, patchy nuclear stain in an expected high-staining population. | Uneven section handling or staining may contribute (general IHC practice). HPA reports High staining for specific cell populations, not a fixed intensity threshold for every specimen (HPA: tissue IHC). | Compare intact nuclei across the section and repeat with a positive section if the pattern cannot be scored (general IHC practice). |
| Cytoplasmic signal dominates while nuclei are nearly blank. | The result diverges from the nuclear tissue profile (HPA: ubiquitous nuclear expression), although cytoplasmic localization is documented (UniProt Q12905; HPA: ICC-IF). | Compare a known-positive section and no-primary control; review antibody specificity and detection conditions before assigning cytoplasmic ILF2 (general IHC practice). |
| Chromogen appears in the no-primary control. | Primary-antibody-independent signal suggests endogenous detection activity or nonspecific reagent deposition (general IHC practice). | Review the detection system, blocking and washes, then interpret test-section staining only after control background is resolved (general IHC practice). |
| Dense, diffuse background makes nuclei hard to distinguish. | Background can obscure the nuclear pattern that anchors tissue interpretation (general IHC practice; HPA: ubiquitous nuclear expression). | Check reagent concentration against the IHC-validated antibody's instructions and review blocking, washes and chromogen development (general IHC practice). |
| Only scattered unexpected cells stain strongly. | Cross-reactivity or endogenous activity is possible (general IHC practice), but HPA's broad nuclear profile supplies no designated negative cell type here (HPA: tissue IHC). | Verify cell identity and nuclear localization; compare the no-primary control and a known-positive section before labeling the cells false positive (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Breast | Adipocytes | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| None in HPA: ILF2 is detected in all 44 scored tissues. Use a no-primary (secondary-only) and an isotype control instead. | ||||
These answers use the IHC-validated antibody’s paraffin-section example and ILF2 localisation evidence to guide chromogenic staining and interpretation (datasheet M04443-1; HPA subcellular).
Both antibodies show IHC staining in human paraffin sections (M04443-1 and A04443-2 IHC captions); A04443-2 also shows IF staining in HeLa cells (A04443-2 IF caption).
M04443-1 has IHC images from human lung cancer, lymphoma, glioma and testis cancer paraffin sections (M04443-1 IHC captions). A04443-2 has IHC images from human esophageal squamous carcinoma, liver cancer, lung cancer and rectum adenocarcinoma paraffin sections, plus IF data from HeLa cells (A04443-2 IHC and IF captions).
Which to pick: For tissue IHC, M04443-1 is a rabbit monoclonal option (catalog: clone 18I48); its human paraffin-section images used EDTA retrieval at pH 8.0 and 1:50 primary antibody (M04443-1 IHC captions). For IF/ICC, choose A04443-2, which lists both applications and shows IF staining in HeLa cells at 5 μg/ml (A04443-2 applications and IF caption). A04443-2 has the broadest listed species reactivity—human, mouse, rat and monkey—while its IHC images document human paraffin sections with EDTA retrieval at pH 8.0; the fixative is unreported (A04443-2 catalog reactivity and IHC captions).