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- Table of Contents
Plan chromogenic KMO IHC in paraffin sections using kidney proximal tubules as a high-staining reference (HPA tissue IHC). This guide covers cytoplasmic scoring (HPA tissue IHC), fixation consistency (standard IHC practice) and the catalog antibody’s 2–5 μg/ml range (datasheet A05469-3).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic in tissue (HPA tissue IHC); outer mitochondrial membrane (UniProt) | |
| Staining pattern | Cytoplasmic in proximal tubules, hepatocytes and trophoblasts (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A05469-3) | |
| Positive control | Kidney+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Endogenous peroxidase can add liver DAB background (standard IHC practice) | |
| Regulation | No expression regulator specified (UniProt) | |
| Isoform / epitope | 3 isoforms; antibody epitope and isoform coverage are unspecified (UniProt; datasheet A05469-3) |
The catalog antibody’s IHC-P protocol is paired with four published KMO IHC protocols covering mouse colon, breast cancer tissue, canine mammary tumors, and kidney sections (PMC7081011; PMC7590459; PMC6521384; PMC11148292).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A05469-3) |
| Fixation | Image fixative and duration unreported (datasheet A05469-3); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A05469-3); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A05469-3) |
| Primary antibody | Rabbit anti-KMO, 2-5 μg/ml (datasheet A05469-3) |
| Primary incubation | Overnight at 4 °C (datasheet A05469-3) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A05469-3) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | KMO-positive staining in proximal tubules (cell body) of kidney (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in liver, kidney, placenta, endometrial glands and lymphoid tissues. No signal in the no-primary control. |
KMO is assigned to the mitochondrial outer membrane, with two transmembrane segments (UniProt O15229: topology). In paraffin IHC, expect cytoplasmic staining, strongest in kidney proximal tubules and present in hepatocytes, placental trophoblastic cells, endometrial glandular cells and splenic white-pulp cells (HPA: tissue IHC). HPA rates the tissue profile Enhanced, while reporting medium consistency between antibody staining and RNA expression (HPA: reliability).
| Kidney proximal-tubule cell bodies stain strongly; hepatocytes and placental trophoblastic cells stain less intensely. | This matches HPA's High proximal-tubule and Medium hepatocyte and trophoblastic-cell IHC levels (HPA: tissue IHC). Score cell types separately: a positive kidney section establishes that staining can be detected in that run, but does not by itself establish specificity in every tissue (standard IHC practice). |
| Predominantly nuclear staining appears where cytoplasmic staining was expected. | A nuclear-dominant pattern conflicts with HPA's cytoplasmic tissue profile and UniProt's outer-membrane assignment (HPA: tissue IHC; UniProt O15229: subcellular location). Treat it as suspect; compare the positive control and detection controls before assigning it to KMO (standard IHC practice). |
| Adipocytes or adrenal glandular cells stain as prominently as kidney proximal tubules. | HPA reports KMO as Not detected in those cells but High in proximal tubules (HPA: tissue IHC). Unexpected staining warrants a specificity check; cross-reactivity or endogenous detection activity are possible explanations, not diagnoses from appearance alone (standard IHC practice). |
| Colour covers most of the section, including spaces between cells or cells expected to be unstained. | A broad deposit obscures the cell-resolved cytoplasmic profile reported by HPA (HPA: tissue IHC). Review a primary-antibody omission control, blocking and wash steps, and chromogen development to locate background from the detection workflow (standard IHC practice). |
| Kidney proximal tubules show no convincing signal. | That conflicts with HPA's High proximal-tubule result (HPA: tissue IHC), but a negative run alone cannot distinguish assay failure from sample differences. Check section quality, reagent activity and the positive control before interpreting weaker tissues (standard IHC practice). |
| Compartment and topology | UniProt assigns KMO to the mitochondrial outer membrane and lists transmembrane segments at residues 385–404 and 425–445 (UniProt O15229: topology). HPA describes cytoplasmic IHC staining (HPA: tissue IHC); chromogenic cytoplasmic colour alone cannot resolve the organelle (standard IHC interpretation). |
| Tissue and cell-type selection | Kidney proximal tubules provide the strongest listed reference; hepatocytes, trophoblastic cells, endometrial glands and splenic white-pulp cells are Medium (HPA: tissue IHC). Lymph-node and tonsil non-germinal-center cells are Low (HPA: tissue IHC), so score those sites against their own expected levels. |
| Antibody evidence | HPA lists HPA031115 and HPA056942 as IHC Enhanced, while the overall tissue profile has medium agreement with RNA (HPA: antibody validation; HPA: reliability). These annotations support comparison with the reported pattern, but do not validate every unexpected compartment or cell type. |
| Isoforms and processing | UniProt lists three KMO isoforms, a chain spanning residues 1–486 and no annotated signal peptide or propeptide (UniProt O15229: isoforms and processing). The supplied sources do not map antibody epitopes to isoforms, so an isoform-specific staining claim is unsupported. |
| Antigen retrieval | Retrieval conditions can be checked against the catalog antibody's IHC-P instructions as a general paraffin-IHC workflow step (standard IHC practice). Neither supplied source reports KMO-specific fixation sensitivity or an optimal retrieval condition; do not infer either from topology or tissue staining. |
| IF/ICC: what pattern is supported? | HPA summarizes the subcellular signal as Membrane but provides no main location or ICC-IF cell-line images (HPA: subcellular). UniProt assigns the mitochondrial outer membrane (UniProt O15229: location). The supplied IF evidence does not establish an image-level staining pattern. |
| Situation | Likely cause | Next action |
|---|---|---|
| Proximal-tubule signal is absent or faint. | A failed IHC run is possible; proximal tubules are High in the HPA reference (HPA: tissue IHC). | Inspect the positive section, reagent activity and detection steps, then check retrieval against the catalog antibody's IHC-P instructions (standard IHC practice). Avoid assigning KMO-specific fixation sensitivity from this result. |
| Nuclei dominate the stain. | The distribution conflicts with cytoplasmic IHC and outer-membrane localisation (HPA: tissue IHC; UniProt O15229: location). | Compare the same run's positive and primary-antibody omission controls; review counterstain and chromogen deposits before scoring nuclear colour as target signal (standard IHC practice). |
| Adipocytes or adrenal glandular cells are strongly positive. | Those cell types are Not detected in the HPA profile (HPA: tissue IHC); nonspecific binding or detection activity is possible (standard IHC practice). | Compare them with kidney proximal tubules and an omission control; repeat with an independently validated antibody if specificity remains uncertain (HPA: antibody validation; standard IHC practice). |
| The entire section has diffuse chromogen. | Background from incomplete blocking, washing or detection chemistry is possible (standard IHC practice); it prevents assessment of HPA's cell-specific profile (HPA: tissue IHC). | Review blocking, washes and development time, and inspect a primary-antibody omission control before changing the biological interpretation (standard IHC practice). |
| Lymph node or tonsil looks weaker than kidney. | HPA reports Low non-germinal-center staining in those tissues versus High proximal-tubule staining (HPA: tissue IHC). | Score the specified cell populations and compare with a kidney positive section; do not require equal intensity across these tissues (HPA: tissue IHC; standard IHC interpretation). |
| Hepatocytes and proximal tubules appear equally intense. | The relative intensities differ from HPA's Medium hepatocyte and High proximal-tubule levels (HPA: tissue IHC); section or detection differences may contribute (standard IHC practice). | Check controls and compare cells within appropriately processed sections; record the observed intensity without treating the HPA levels as an absolute staining threshold (standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Kidney | Proximal tubules (cell body) | High | Protein (IHC) | HPA → |
| Endometrium | Glandular cells | Medium | Protein (IHC) | HPA → |
| Liver | Hepatocytes | Medium | Protein (IHC) | HPA → |
| Placenta | Trophoblastic cells | Medium | Protein (IHC) | HPA → |
| Spleen | Cells in white pulp | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
Use cell-type controls and matched section processing to evaluate KMO staining in paraffin sections; reserve IF for orthogonal localisation checks.
A05469-3 has real IHC data from paraffin sections of human liver cancer and mouse and rat kidney (catalog IHC captions). No IF/ICC data are supplied (catalog applications; image alts).
A05469-3 is listed for IHC in human, mouse and rat at 2–5 μg/ml (catalog applications, reactivity and dilution). Its IHC captions document paraffin sections of human liver cancer, mouse kidney and rat kidney (catalog IHC captions).
Which to pick: For tissue IHC, choose A05469-3, a rabbit antibody with chromogenic paraffin-section data (catalog host; IHC captions). There is no IF/ICC-validated choice in this payload (catalog applications; IF image alts). A05469-3 also covers human, mouse and rat IHC (catalog reactivity; IHC captions); the captions do not report the fixative (catalog IHC captions).