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- Table of Contents
Plan LATS2 chromogenic IHC using its cytoplasmic and nuclear tissue staining pattern (HPA tissue IHC). Stomach glandular cells show high staining, while appendix glandular cells have no detected staining; use this contrast when choosing controls (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and nuclear staining in most tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic and nuclear signal; stained cell types vary (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A01352-1) | |
| Positive control | Cerebral cortex+4 more · see all | |
| Negative control | Appendix+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent across samples. (standard IHC practice; not target-specific) | |
| Caveat | Staining has low consistency with tissue RNA levels (HPA tissue IHC) | |
| Regulation | Expression regulation is unreported (UniProt) | |
| Isoform / epitope | No reported isoforms or processing to alter epitope mapping (UniProt) |
The catalog antibody uses EDTA pH 8.0 heat retrieval (datasheet A01352-1). These four published LATS2 tissue IHC protocols provide additional study-specific conditions (PMC4451109; PMC5746657; PMC2958949; PMC13079482).
| Sample | Paraffin-embedded human prostate cancer tissue; fixative not specified (datasheet A01352-1) |
| Fixation | Image fixative and duration unreported (datasheet A01352-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A01352-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01352-1) |
| Primary antibody | Rabbit anti-LATS2, 1:50 (datasheet A01352-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01352-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A01352-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LATS2-positive staining in neuropil of cerebral cortex (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and nuclear expression in most tissues. No signal in the no-primary control. |
LATS2 can appear in the cytoplasm and nucleus, with centrosome or spindle pole localisation in dividing cells (UniProt Q9NRM7 localisation). In tissue IHC, expect staining in appropriate cell populations, including stomach glandular cells and testicular spermatogonia (HPA: High in both). LATS2 has no transmembrane segment, so a membrane rim is unexpected (UniProt Q9NRM7 topology). HPA rates its tissue IHC pattern Approved, while reporting low consistency with RNA expression (HPA tissue IHC).
| Cytoplasmic and nuclear staining in stomach glandular cells or testicular spermatogonia. | This fits the reported tissue pattern: both cell populations stain High, and LATS2 has cytoplasmic and nuclear localisation (HPA tissue IHC; UniProt Q9NRM7 localisation). Interpret the stained cells and compartments together, rather than treating any brown signal in the section as a positive result. |
| Predominantly sharp staining along cell membranes, with little intracellular signal. | A membrane rim does not match the reported cytoplasmic and nuclear tissue pattern or the absence of a transmembrane segment (HPA tissue IHC; UniProt Q9NRM7 topology). Review morphology and detection controls before calling it LATS2 staining (standard IHC practice). |
| Strong staining in a cell population reported as Not detected, such as appendix glandular cells. | The distribution conflicts with that specific HPA observation; cross-reactivity or endogenous detection activity is possible (HPA: appendix glandular cells Not detected; standard IHC practice). It is a reason to investigate specificity, not proof that the tissue contains no LATS2. |
| Diffuse colour over tissue and blank spaces, obscuring cell boundaries. | This cannot support a compartment or cell-type call. Non-specific binding or detection background may be contributing (standard IHC practice). Compare the negative reagent control and inspect whether signal tracks cells before assigning an HPA-compatible pattern (HPA tissue IHC). |
| No staining in stomach glandular cells or testicular spermatogonia. | Both are reported High by HPA, so an absent result warrants a run-level check (HPA tissue IHC). Check the positive control and the antibody's IHC-P instructions before interpreting the specimen; HPA's Approved rating also carries a low RNA–staining consistency caveat (HPA tissue IHC; standard IHC practice). |
| Tissue and cell selection | HPA reports High staining in cerebral cortex neuropil, stomach glandular cells and testicular spermatogonia; Medium in breast, colon and duodenal glandular cells (HPA tissue IHC). Select a control by the named cell population, since a whole-tissue label alone does not specify which cells should stain (standard IHC practice). |
| Evidence confidence | The tissue IHC reliability is Approved, but antibody staining has low consistency with RNA expression (HPA tissue IHC). Treat the listed cell-level observations as reference patterns, while checking an unexpected result with controls. HPA lists HPA039191 as IHC Approved; it does not list that antibody as IHC Enhanced (HPA antibodies). |
| Compartment and cell cycle | UniProt places LATS2 in cytoplasm and nucleus, with centrosome localisation during interphase and movement to spindle poles in mitosis and the midbody during cytokinesis (UniProt Q9NRM7 localisation). A small mitotic focus may therefore be plausible, but ordinary chromogenic tissue IHC may not resolve it reliably (standard IHC practice). |
| Tissue evidence conflict | UniProt reports high expression in heart and skeletal muscle, whereas HPA lists heart muscle cardiomyocytes as Not detected by tissue IHC (UniProt Q9NRM7 tissue specificity; HPA: heart muscle cardiomyocytes Not detected). Do not use heart cardiomyocytes as the sole positive control for this staining pattern. |
| IF/ICC Q: What pattern is reported? | A: HPA reports cytosol and centriolar satellites as approved locations in ICC-IF, with images from A-431, U-251MG and U2OS (HPA subcellular). HPA049037 is ICC Supported, while HPA039191 is IHC Approved (HPA antibodies). Those validation labels apply to their respective assays and do not establish an IF result for the IHC antibody. |
| Situation | Likely cause | Next action |
|---|---|---|
| The expected glandular-cell positive control is blank. | The run may have failed, or the tested material may differ from HPA's observed pattern; HPA reports High staining in stomach glandular cells (HPA tissue IHC; standard IHC practice). | Confirm that glandular cells are present and preserved, review the positive and negative controls, and follow the IHC-validated antibody's supplied IHC-P instructions for retrieval and detection (standard IHC practice). |
| Signal is confined to cell borders. | Border-only staining conflicts with the reported cytoplasmic and nuclear pattern and LATS2's lack of a transmembrane segment (HPA tissue IHC; UniProt Q9NRM7 topology). | Check adjacent morphology and detection controls; score intracellular signal separately from the border pattern (standard IHC practice). |
| Appendix glandular cells stain strongly. | HPA lists that cell population as Not detected; cross-reactivity or endogenous detection activity may explain the discrepancy (HPA tissue IHC; standard IHC practice). | Check a negative reagent control and the detection-system controls. Interpret the result alongside a named HPA High cell population on the same run (HPA tissue IHC; standard IHC practice). |
| Brown colour is diffuse or present in blank spaces. | Background may obscure the cytoplasmic and nuclear pattern needed for interpretation (HPA tissue IHC; standard IHC practice). | Inspect negative controls, blocking and detection steps, then repeat with the antibody's IHC-P instructions if the compartment cannot be scored (standard IHC practice). |
| Only the nucleus stains across many tissue cell types. | Nuclear localisation is possible for LATS2, but HPA describes both cytoplasmic and nuclear expression in most tissues (UniProt Q9NRM7 localisation; HPA tissue IHC). | Compare cell types and compartments in a positive control and review counterstain and negative controls before assigning a nuclear-only pattern (standard IHC practice). |
| Heart cardiomyocytes are blank and the run is called a failure. | HPA reports cardiomyocytes as Not detected despite UniProt's high heart expression statement (HPA tissue IHC; UniProt Q9NRM7 tissue specificity). | Assess the run with stomach glandular cells or testicular spermatogonia, which HPA reports as High, and record the heart result separately (HPA tissue IHC; standard IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Cerebral cortex | Neuropil | High | Protein (IHC) | HPA → |
| Stomach | Glandular cells | High | Protein (IHC) | HPA → |
| Testis | Spermatogonia cells | High | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Endometrium | Cells in endometrial stroma | Not detected | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Parathyroid gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot LATS2 staining in paraffin sections by checking retrieval, cellular compartment, controls, and scoring before interpreting chromogenic signal.
The IHC images show human prostate cancer and skeletal muscle paraffin sections (IHC captions: A01352-1, A01352); an IF image shows HepG2 cells (A01352 IF caption). Both antibodies list Human and Mouse reactivity (catalog reactivity).
A01352-1 will render with IHC data from a human prostate cancer paraffin section (A01352-1 IHC caption). A01352 will render with IHC data from a human skeletal muscle paraffin section with a peptide-blocked comparison; its separate IF image shows HepG2 cells (A01352 IHC and IF captions).
Which to pick: For tissue IHC, choose A01352-1 if a documented retrieval procedure helps: its prostate cancer paraffin-section caption specifies EDTA pH 8.0 retrieval and a 1:200 primary incubation; the fixative is unreported (A01352-1 IHC caption). For IF, choose A01352 for its HepG2 image with a peptide-blocked comparison (A01352 IF caption); for ICC, choose A01352-1 because ICC is listed among its applications (A01352-1 catalog applications). Both are rabbit polyclonal antibodies listed as reactive with Human and Mouse (catalog: A01352, A01352-1), while their IHC captions document human paraffin sections only and do not report a fixative (IHC captions: A01352, A01352-1).