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- Table of Contents
Plan LCP1 IHC on paraffin sections around selective cytoplasmic staining in immune cells (HPA tissue IHC). Tonsil germinal center cells provide a high-staining reference (HPA tissue IHC) for assessing chromogenic staining.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in immune cells (HPA tissue IHC) | |
| Staining pattern | Selective cytoplasmic staining in immune cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A03361) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A03361) | |
| Caveat | Epididymal glandular cells also stain strongly (HPA tissue IHC) | |
| Regulation | T-cell costimulation shifts localisation (UniProt) | |
| Isoform / epitope | 2 isoforms; cytoplasmic epitope coverage is unknown (UniProt) |
The catalog antibody protocol and three published LCP1 IHC protocols cover formalin-fixed, paraffin-embedded breast tissue and FFPE tumor samples (PMC11229261; PMC11974013; PMC13266032).
| Sample | Paraffin-embedded human B lymphocytic tumor tissue; fixative not specified (datasheet A03361) |
| Fixation | Image fixative and duration unreported (datasheet A03361); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A03361) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03361) |
| Primary antibody | Rabbit anti-LCP1, 0.5-1μg/ml (datasheet A03361) |
| Primary incubation | Overnight at 4 °C (datasheet A03361) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A03361) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LCP1-positive staining in germinal center cells of appendix (HPA tissue IHC: High). HPA tissue profile: Selective cytoplasmic expression in immune cells. No signal in the no-primary control. |
In paraffin-section IHC, expect predominantly cytoplasmic LCP1 staining in immune cells (HPA: Enhanced tissue IHC; selective cytoplasmic immune-cell expression). Germinal center cells, bone marrow hematopoietic cells, lung macrophages and splenic red-pulp cells are reported at High levels (HPA: tissue IHC). LCP1 is an actin-associated protein with no transmembrane segment (UniProt P13796: localization and topology).
| Distinct cytoplasmic staining in germinal center cells, with nearby cell types less conspicuous. | This fits the reported selective pattern: appendix, lymph node and tonsil germinal center cells stain High (HPA: tissue IHC). Score the identified cells rather than assigning one intensity to the whole section (standard IHC practice). |
| Immune cells stain, but the apparent signal is exclusively nuclear. | An exclusively nuclear result conflicts with the expected cytoplasmic tissue pattern (HPA: tissue IHC) and cytoskeletal localization (UniProt P13796). Check whether counterstain, pigment or detection background is being mistaken for specific chromogen (standard IHC practice). |
| Broad staining appears in a cell population reported as negative, such as bronchial respiratory epithelium. | HPA reports bronchial respiratory epithelial cells as Not detected, while epididymal glandular cells are High (HPA: tissue IHC). Identify the stained cells first; persistent signal in the reported negative population may reflect cross-reactivity or endogenous detection activity (standard IHC practice). |
| A uniform haze covers tissue, empty spaces or many unrelated cell types. | That distribution does not match selective cytoplasmic immune-cell staining (HPA: tissue IHC). Inspect a no-primary control for detection background, then assess blocking, washes and primary-antibody concentration (standard IHC practice). |
| No convincing staining appears in a known-positive cell population. | Absence in, for example, lung macrophages or lymph node germinal center cells conflicts with their reported High staining (HPA: tissue IHC). Confirm that those cells are present before investigating retrieval, antibody performance and detection (standard IHC practice). |
| Cell identity and tissue context | LCP1 staining is selective, and epididymal glandular cells are a documented High exception to an immune-cell-only reading (HPA: tissue IHC). Compare like cell populations when choosing positive and negative reference areas (standard IHC practice). |
| Antibody validation | HPA rates tissue IHC reliability as Enhanced and lists 2 antibodies with Enhanced IHC validation: HPA019493 and CAB020673 (HPA: tissue IHC; antibody validation). This supports the reported pattern, but it does not validate every antibody or staining run. |
| Protein compartment | LCP1 has no transmembrane segment and associates with the cytoskeleton, junctions and cell projections (UniProt P13796: topology and localization). Interpret the paraffin-section result against HPA's cytoplasmic tissue pattern (HPA: tissue IHC). |
| Retrieval and specimen preparation | Antigen retrieval can be optimized against a known-positive and a no-primary control (standard IHC practice). No LCP1-specific retrieval condition or fixation-sensitivity finding is supplied by UniProt or HPA; avoid assigning an absent signal to a particular fixation effect. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive immune cells have no signal. | The expected population may be absent, or the IHC workflow may have failed (HPA: High in lung macrophages and lymph node germinal center cells; standard IHC practice). | Verify cell identity, then check the positive control, retrieval, primary-antibody preparation and detection steps (standard IHC practice). No LCP1-specific retrieval setting is established here. |
| Most of the section looks diffusely brown. | Uniform color is inconsistent with selective cytoplasmic expression (HPA: tissue IHC). Background from blocking, washes or detection is possible (standard IHC practice). | Compare a no-primary control; review blocking and wash steps, and adjust antibody concentration only against a positive control (standard IHC practice). |
| A reported negative cell population stains strongly. | Misidentified immune cells, cross-reactivity or endogenous detection activity may explain the result (standard IHC practice); bronchial respiratory epithelium is reported Not detected (HPA: tissue IHC). | Confirm cell morphology and location, inspect the no-primary control, and compare a documented positive population on the same run (standard IHC practice; HPA: tissue IHC). |
| Color appears confined to nuclei. | Nuclear-only staining does not fit HPA's cytoplasmic tissue profile or UniProt's cytoskeletal localization (HPA: tissue IHC; UniProt P13796: localization). | Recheck the counterstain and chromogen visually; compare no-primary and positive controls before scoring the nuclei as LCP1-positive (standard IHC practice). |
| Signal seems weak despite visible immune cells. | Cell identity, detection performance or scoring threshold may be uncertain (standard IHC practice). HPA's High calls apply to specified populations, not every immune cell (HPA: tissue IHC). | Compare the same named cell population in a documented positive tissue and review the run controls before changing conditions (HPA: tissue IHC; standard IHC practice). |
| Q: Should IF/ICC show the same compartment as paraffin IHC? | HPA reports mainly plasma-membrane localization in ICC-IF, with supported actin-filament staining and uncertain cytosolic staining (HPA: subcellular ICC-IF); tissue IHC is described as cytoplasmic (HPA: tissue IHC). | A: Interpret each assay against its own HPA localization evidence. Use the dedicated IF/ICC guide for that assay's workflow (HPA: tissue IHC and subcellular ICC-IF). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Germinal center cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Lung | Macrophages | High | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot LCP1 staining in paraffin sections by checking retrieval, cell identity, subcellular pattern, and detection controls (datasheet A03361; HPA tissue IHC; UniProt P13796).
A03361 has IHC images from human paraffin sections and an IF image from A431 cells (A03361 image captions). Its listed reactivity covers human, mouse, and rat (catalog reactivity).
A03361 has pictured IHC staining in human B lymphocytic tumor and tonsil paraffin sections, plus IF staining in A431 cells (A03361 image captions). M03361-1 is listed for IHC and ICC/IF in human, mouse, and rat; M03361-2 is listed for those applications in human, with no sample images supplied for either (catalog applications, reactivity, and image captions).
Which to pick: For tissue IHC, choose A03361: its own caption documents a human paraffin section stained at 1 μg/mL after citrate retrieval; the fixative is unreported (A03361 IHC image caption). For IF/ICC, A03361 has a pictured A431 cell result; M03361-1 and M03361-2 are rabbit monoclonals listed for ICC/IF without supplied images (A03361 IF image caption; catalog titles, applications, and image captions). For cross-species work, A03361 and M03361-1 list human, mouse, and rat reactivity, while M03361-2 lists human only; A03361’s pictured IHC samples are human (catalog reactivity; A03361 IHC image captions).