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- Table of Contents
Plan paraffin-section LCP1 IHC around cytoplasmic immune-cell staining, with tonsil germinal-center cells as a positive reference (HPA tissue IHC). This guide covers fixation consistency, antibody titration, chromogenic detection, and cell-specific scoring.
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasm in immune cells (HPA tissue IHC) | |
| Staining pattern | Selective cytoplasmic staining in immune cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A03361) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific); validate conditions locally. | |
| Caveat | Strong lung macrophage staining can complicate cell scoring (HPA tissue IHC) | |
| Regulation | TCR costimulation shifts LCP1 to synapses (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope differences unspecified; cytoplasmic target (UniProt) |
The catalog antibody has an IHC-P protocol (datasheet A03361). These published methods describe LCP1 staining in breast, sarcoma, and urological cancer samples (PMC11229261; PMC11974013; PMC13266032).
| Sample | Paraffin-embedded human B lymphocytic tumor tissue; fixative not specified (datasheet A03361) |
| Fixation | Image fixative and duration unreported (datasheet A03361); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A03361) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A03361) |
| Primary antibody | Rabbit anti-LCP1, 0.5-1μg/ml (datasheet A03361) |
| Primary incubation | Overnight at 4 °C (datasheet A03361) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A03361) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LCP1-positive staining in germinal center cells of appendix (HPA tissue IHC: High). HPA tissue profile: Selective cytoplasmic expression in immune cells. No signal in the no-primary control. |
LCP1 is a cytoskeletal protein without a transmembrane segment (UniProt P13796 topology). In paraffin section IHC, expect selective cytoplasmic staining in immune cells; HPA rates the tissue pattern Enhanced for agreement between staining and RNA data (HPA: tissue IHC). UniProt also places LCP1 at cell projections and junctions, while HPA ICC-IF supports a plasma membrane location; assess those findings in their respective applications (UniProt P13796 subcellular; HPA: ICC-IF).
| Strong cytoplasmic staining in lung macrophages, bone marrow hematopoietic cells, or lymphoid germinal center cells (HPA: High in each). | This matches the selective immune cell pattern reported for tissue IHC (HPA: tissue IHC). Judge the stained cells and their compartment together: a positive area alone does not establish that the expected cells are positive (general IHC interpretation). |
| Predominantly nuclear staining, with little staining in the expected immune cell cytoplasm (HPA: tissue IHC pattern). | A nuclear dominant result conflicts with HPA tissue IHC and UniProt cytoskeletal localization (HPA: tissue IHC; UniProt P13796 subcellular). Treat it as suspect and check controls, antibody dilution, and detection conditions before assigning LCP1 localization (general IHC practice). |
| Staining concentrated in adipocytes or bronchial respiratory epithelial cells (HPA: Not detected in those cells). | These cells are reported as negative in the sampled HPA tissues (HPA: adipose tissue; HPA: bronchus). Unexpected staining may reflect nonspecific binding or endogenous detection activity; compare a reagent control and the expected positive cells on the same run (general IHC practice). |
| Weak, diffuse color across cells and surrounding tissue, without a clear cell specific pattern (general IHC observation). | Diffuse color obscures the selective cytoplasmic pattern needed for interpretation (HPA: tissue IHC). Assess background in a control lacking primary antibody, then review blocking, washes, and detection exposure (general IHC practice). |
| No staining in bone marrow hematopoietic cells or lung macrophages (HPA: High in both). | The run has missed an expected positive population (HPA: bone marrow; HPA: lung). Check that the IHC-validated antibody and detection reagents worked, then review the chosen retrieval and dilution conditions (general IHC practice); this result alone does not identify the failed step. |
| Cell population and tissue (HPA: tissue IHC) | High staining is reported in lung macrophages, bone marrow hematopoietic cells, lymphoid germinal center cells, spleen red pulp cells, and epididymal glandular cells (HPA: tissue IHC). The epididymal result is a documented exception to a simple immune cell only rule (HPA: epididymis). |
| Compartment and topology (UniProt P13796; HPA: tissue IHC) | UniProt places LCP1 in the cytoskeleton, junctions, and projections and reports no transmembrane segment (UniProt P13796). HPA's tissue IHC profile is selective cytoplasmic expression in immune cells (HPA: tissue IHC); a membrane outline alone should not replace cell type assessment. |
| Antibody evidence (HPA: antibody validation) | HPA019493 and CAB020673 carry Enhanced IHC status, whereas HPA000895 has no stated IHC status in the supplied record (HPA: antibodies). Match interpretation to the antibody actually used; validation for one antibody does not establish identical performance for another (general IHC practice). |
| Isoforms and modifications (UniProt P13796) | UniProt lists two isoforms and multiple modified residues, including phosphorylated sites (UniProt P13796). The supplied record does not map an IHC antibody epitope or show how either feature changes staining, so do not assign a staining difference to them. |
| IF/ICC question: should its membrane signal guide IHC scoring? (HPA: ICC-IF) | HPA ICC-IF supports a main plasma membrane location, with supported actin filament and uncertain cytosol annotations (HPA: ICC-IF). For paraffin section IHC, use the observed selective cytoplasmic tissue pattern as the scoring reference (HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Known positive cells have no chromogenic signal (HPA: High in bone marrow and lung). | The run may have failed at primary binding, retrieval, or detection; the absent signal does not distinguish among them (general IHC practice). | Verify the positive control, antibody use conditions, retrieval step, and detection reagents before interpreting the test section (general IHC practice). |
| Color is strong in HPA negative cell populations (HPA: adipocytes; bronchial respiratory epithelial cells). | Nonspecific antibody binding or endogenous detection activity can mimic a positive result (general IHC practice). | Compare a control lacking primary antibody and review blocking and detection controls; score the named cell populations separately (general IHC practice). |
| Most staining appears nuclear (HPA: tissue IHC pattern). | This conflicts with reported cytoplasmic and cytoskeletal localization (HPA: tissue IHC; UniProt P13796 subcellular). | Recheck cell identity, compare the positive control, and review antibody concentration and detection background (general IHC practice). |
| A uniform haze hides cell boundaries (general IHC observation). | Excess background prevents a reliable comparison with selective cytoplasmic staining (HPA: tissue IHC). | Inspect the control lacking primary antibody; review wash steps, blocking, and chromogen development (general IHC practice). |
| Only a thin membrane rim is visible in paraffin section IHC (HPA: ICC-IF membrane location). | ICC-IF and tissue IHC report different leading appearances (HPA: ICC-IF; HPA: tissue IHC). | Assess whether expected immune cells also show cytoplasmic staining; use the tissue IHC pattern for the IHC call (HPA: tissue IHC). |
| Epididymal glandular cells stain strongly (HPA: High in epididymis). | This is a reported HPA positive population, despite the broader selective immune cell profile (HPA: epididymis; HPA: tissue IHC). | Record tissue and cell type explicitly, then compare negative cell populations and controls before calling it nonspecific (HPA: tissue IHC; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data. Antibody staining in cells/structures not annotated, view images.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Germinal center cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Epididymis | Glandular cells | High | Protein (IHC) | HPA → |
| Lung | Macrophages | High | Protein (IHC) | HPA → |
| Lymph node | Germinal center cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Breast | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot LCP1 chromogenic IHC in paraffin sections using the catalog antibody’s tissue image, UniProt annotation, and HPA staining patterns.
A03361 has pictured LCP1 staining in human paraffin sections and A431 cells; its listed reactivity covers human, mouse, and rat (A03361 IHC/IF captions; catalog reactivity).
A03361 has IHC images from human B lymphocytic tumor and tonsil paraffin sections, plus an IF/ICC image from A431 cells (A03361 IHC/IF captions). M03361-1 lists IHC and IF/ICC for human, mouse, and rat; M03361-2 lists those applications for human, but neither has an IHC or IF image caption (catalog applications, reactivity, and image_alts).
Which to pick: Choose A03361 for tissue IHC: its own caption documents human paraffin sections, citrate retrieval, and staining at 1 μg/ml; the fixative is unreported (A03361 IHC caption). Choose A03361 for IF/ICC when pictured evidence matters: its A431 image used 2 μg/ml; M03361-1 and M03361-2 are listed rabbit monoclonal alternatives without pictured IHC or IF results (A03361 IF caption; catalog clone, applications, and image_alts). For cross-species work, A03361 and M03361-1 list human, mouse, and rat reactivity, while M03361-2 lists human only; A03361’s pictured samples are human tissue and A431 cells (catalog reactivity; A03361 IHC/IF captions).