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- Table of Contents
Plan chromogenic LDLR IHC in paraffin sections using 1 μg/mL as a documented starting concentration for A00076-2 (datasheet A00076-2). Expect cytoplasmic staining in liver hepatocytes (HPA tissue IHC); LDLR’s membrane and endosomal locations inform interpretation (UniProt).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining (HPA tissue IHC); membrane and endosomal LDLR (UniProt) | |
| Staining pattern | Cytoplasmic staining in several tissues; high in Leydig cells (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A00076-2) | |
| Positive control | Testis+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep paraffin-section fixation consistent (standard IHC practice; not target-specific) | |
| Caveat | Antibody staining and RNA show low consistency (HPA tissue IHC) | |
| Regulation | LDL binding rapidly triggers endocytosis (UniProt) | |
| Isoform / epitope | 6 isoforms; map the epitope to the extracellular or cytoplasmic region (UniProt) |
Compare the catalog antibody’s IHC-P protocol (datasheet: A00076-2) with published LDLR IHC methods for ovarian carcinoma, high-grade glioma, rat liver, and small-cell lung cancer (PMC8664653; PMC9958636; PMC6413123; PMC5391547).
| Sample | Paraffin-embedded human liver cancer tissue; fixative not specified (datasheet A00076-2) |
| Fixation | Image fixative and duration unreported (datasheet A00076-2); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A00076-2); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A00076-2) |
| Primary antibody | Rabbit anti-LDLR, 0.5-1μg/ml (datasheet A00076-2) |
| Primary incubation | Overnight at 4 °C (datasheet A00076-2) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A00076-2) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | LDLR-positive staining in leydig cells of testis (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in several tissues. No signal in the no-primary control. |
LDLR is a single-pass cell-surface receptor that also traffics through endosomes and other intracellular compartments (UniProt P01130 topology and subcellular location). In paraffin-section IHC, expect cytoplasmic staining in several tissues, strongest in testicular Leydig cells and moderate in selected glandular cells, kidney tubules, hepatocytes and lung macrophages (HPA tissue IHC). Treat intensity as a guide: HPA rates the tissue staining Approved but reports low consistency with RNA expression (HPA tissue IHC).
| Strong Leydig-cell staining, or moderate staining in hepatocytes, kidney tubules or listed glandular cells. | This agrees with HPA's observed cell-specific IHC levels: Leydig cells are High; hepatocytes, tubular cells and adrenal, colon, duodenal or stomach glandular cells are Medium (HPA tissue IHC). Evaluate the named cells within the section, rather than treating every cell in a positive tissue as equally positive (HPA tissue IHC; standard IHC practice). |
| Cytoplasmic staining with some cell-boundary or punctate accentuation in the expected cells. | HPA describes cytoplasmic tissue expression; UniProt places LDLR at the cell membrane, coated pits and intracellular trafficking compartments (HPA tissue IHC; UniProt P01130 subcellular location). The balance between these appearances need not be identical in every cell, because LDLR is rapidly endocytosed after ligand binding (UniProt P01130 subcellular location). |
| A predominantly nuclear pattern with little staining in the expected cellular compartments. | Nuclei are outside the reported LDLR locations, so investigate this as possible nonspecific staining before scoring it as LDLR (UniProt P01130 subcellular location; standard IHC practice). Review the negative control and the location of staining in a known-positive section (standard IHC practice). |
| Strong signal in an unexpected cell type, such as adipocytes, while expected cells are weak. | HPA reports adipocytes as Not detected; unexpected staining may reflect cross-reactivity or endogenous detection activity (HPA tissue IHC; standard IHC practice). That comparison is suggestive, not conclusive, because HPA reports low consistency between antibody staining and RNA expression (HPA tissue IHC). |
| Widespread, diffuse color obscures cell boundaries or appears across unlike tissue compartments. | A diffuse pattern cannot be confidently assigned to the cells and compartments reported for LDLR (HPA tissue IHC; UniProt P01130 subcellular location). Check background controls, blocking, washes and detection chemistry before interpreting intensity (standard IHC practice). |
| Topology and antibody epitope | LDLR has an extracellular region at residues 22–788, one transmembrane segment at 789–810, and a cytoplasmic tail at 811–860 (UniProt P01130 topology). Interpret an antibody's staining in light of its documented epitope if that information is available; no epitope is supplied here (standard IHC practice). |
| Trafficking and compartment | Ligand-bound LDLR enters clathrin-coated pits, and UniProt also lists Golgi, early and late endosomes, and lysosomes (UniProt P01130 function and subcellular location). Intracellular signal can therefore fit the biology alongside surface signal (UniProt P01130 subcellular location). |
| Tissue reference and confidence | HPA records High staining in Leydig cells, Medium staining in several specified cell types, and Not detected in adipocytes and several other cells (HPA tissue IHC). Its Approved rating comes with low staining-to-RNA consistency, so use these as reference patterns rather than absolute diagnostic thresholds (HPA tissue IHC). |
| IF/ICC Q&A: where should signal appear? | Vesicles are the approved main location in HPA ICC-IF images (HPA subcellular ICC-IF). This answers the localization question for IF/ICC; the paraffin-section IHC pattern is separately described as cytoplasmic (HPA tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| No signal in a Leydig-cell reference section. | The result conflicts with HPA's High Leydig-cell staining, but does not identify which workflow step failed (HPA tissue IHC; standard IHC practice). | Confirm the expected cells are present, then review the antibody's documented IHC-P procedure, retrieval, detection reagents and control-section performance (standard IHC practice). Do not infer LDLR-specific fixation sensitivity from this result. |
| Only faint staining in a listed Medium tissue. | HPA calls these cells Medium, and its tissue IHC has low consistency with RNA expression; a faint result alone is inconclusive (HPA tissue IHC). | Compare the same run with a Leydig-cell reference and its negative control before changing scoring or workflow conditions (HPA tissue IHC; standard IHC practice). |
| Unexpected strong staining in adipocytes or another HPA Not detected cell type. | The pattern disagrees with HPA's cell-level reference and may arise from cross-reactivity or endogenous detection activity (HPA tissue IHC; standard IHC practice). | Inspect a no-primary control, assess endogenous detection background, and compare with the expected positive cells in the same run (standard IHC practice). |
| Diffuse color across the section, including tissue spaces. | This does not match HPA's cell-associated cytoplasmic pattern and can obscure interpretable signal (HPA tissue IHC; standard IHC practice). | Check the no-primary control, blocking, washes and detection development; score only staining that remains assignable to cells (standard IHC practice). |
| Predominantly nuclear color despite an otherwise visible section. | A nuclear-dominant pattern is outside UniProt's listed LDLR locations and HPA's cytoplasmic tissue description (UniProt P01130 subcellular location; HPA tissue IHC). | Compare the negative control and a positive reference; reassess specificity and counterstain or chromogen appearance before calling nuclei positive (standard IHC practice). |
| Membrane accentuation varies among cells that show cytoplasmic staining. | LDLR occupies the cell surface and intracellular compartments and is rapidly endocytosed after ligand binding (UniProt P01130 subcellular location). | Score the full cell-associated pattern in the HPA-listed cell type; do not require a continuous membrane rim when interpretable cytoplasmic staining is present (HPA tissue IHC; UniProt P01130 subcellular location). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Leydig cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Kidney | Cells in tubules | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot LDLR staining in paraffin sections by checking retrieval, cell compartment, tissue context, and controls before comparing staining intensity.
Anti-LDLR antibodies have IHC images from human liver, liver cancer, liver carcinoma and rectal cancer tissue; one also has a human liver IF image (catalog image captions).
A00076 has human liver IHC and IF images (A00076 image captions); A00076-2 has paraffin-section IHC images from human liver and rectal cancer tissue (A00076-2 image captions). M00076 has a paraffin-section IHC image from human liver carcinoma (M00076 image caption).
Which to pick: For paraffin-section IHC, choose A00076-2 for its documented EDTA retrieval and chromogenic detection workflow (A00076-2 IHC image caption); its fixative is unreported (A00076-2 IHC image caption). For IF, choose A00076, which has a human liver IF image and a starting concentration of 20 μg/mL (A00076 IF image caption; datasheet: 20 μg/mL); ICC validation is unreported (A00076 applications). For work involving mouse or rat samples, A00076 lists reactivity with both, while A00076-2 lists rat and M00076 lists mouse; the supplied tissue images show human samples only (catalog reactivity; catalog image captions).