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- Table of Contents
Plan MAP2K7 chromogenic IHC in paraffin sections using cytoplasmic staining as the tissue pattern (HPA tissue IHC). Use strongly stained spermatogonia as a reference and account for variable staining elsewhere (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in most tissues (HPA tissue IHC) | |
| Staining pattern | High cytoplasmic staining in spermatogonia; variable elsewhere (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9764) | |
| Positive control | Testis+4 more · see all | |
| Negative control | Caudate+2 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Skeletal myocytes show no staining despite reported expression (HPA tissue IHC; UniProt) | |
| Regulation | No expression change established (UniProt) | |
| Isoform / epitope | Four isoforms; check whether the epitope is shared (UniProt) |
The catalog antibody uses EDTA pH 8.0 retrieval (datasheet PB9764). The published MAP2K7 IHC protocol below uses citrate pH 6.0 retrieval (PMC4863692 methods).
| Sample | Paraffin-embedded human testicular cancer tissue; fixative not specified (datasheet PB9764) |
| Fixation | Image fixative and duration unreported (datasheet PB9764); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9764); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9764) |
| Primary antibody | Rabbit anti-MAP2K7, 1-2μg/ml (datasheet PB9764) |
| Primary incubation | Overnight at 4 °C (datasheet PB9764) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9764) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MAP2K7-positive staining in spermatogonia cells of testis (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues at variable levels. No signal in the no-primary control. |
MAP2K7 is a non-transmembrane protein reported in the cytoplasm and nucleus (UniProt O14733 topology and subcellular location). In paraffin-section IHC, expect predominantly cytoplasmic staining across many tissues at variable levels, with high staining in testicular spermatogonia and medium staining in several epithelial and hematopoietic cell populations (HPA: tissue IHC). HPA rates the tissue pattern Supported, with medium consistency between antibody staining and RNA expression (HPA: reliability).
| Cytoplasmic staining in testicular spermatogonia, with weaker or variable staining elsewhere. | This fits the strongest listed tissue observation: spermatogonia are High, while appendix lymphoid tissue and bone-marrow hematopoietic cells are Medium (HPA: tissue IHC). Compare identifiable cells within each section; an entire tissue need not stain uniformly (HPA: cell-level tissue IHC). |
| Signal appears confined to an unexpected compartment, without the expected cytoplasmic pattern. | Check antibody specificity and detection before calling it MAP2K7 (HPA: predominantly cytoplasmic tissue IHC; general IHC practice). Nuclear signal alone is not conclusive evidence of artefact because UniProt also lists the nucleus (UniProt O14733: subcellular location). Membrane-only tissue staining lacks support from the supplied tissue IHC profile (HPA: tissue IHC). |
| Strong staining occurs in cells listed as Not detected, such as oral squamous epithelium. | Consider cross-reactivity or endogenous detection activity and inspect matched controls (HPA: oral mucosa squamous epithelial cells Not detected; general IHC practice). HPA's category describes its observed sample, so a discrepant specimen warrants investigation rather than automatic rejection (HPA: Supported, medium consistency). |
| Diffuse colour covers tissue and spaces between cells, obscuring boundaries. | Treat widespread, poorly localized colour as background until controls support specific staining (general IHC practice). It is difficult to score against HPA's cell-level, predominantly cytoplasmic pattern when the cellular compartment cannot be resolved (HPA: tissue IHC). |
| No signal is visible in an otherwise interpretable testis section. | First verify that spermatogonia are present and assess the detection run with controls (HPA: testis spermatogonia High; general IHC practice). A blank section alone cannot distinguish a technical failure from specimen variation; HPA reports medium consistency between staining and RNA data (HPA: reliability). |
| Choice of tissue and cell-level controls | Testis spermatogonia provide the clearest listed positive comparison; oral squamous epithelial cells are listed as Not detected (HPA: tissue IHC). Score the named cells, because nearby populations can differ (HPA: cell-level tissue IHC). |
| Antibody validation | HPA lists IHC as Supported for HPA001633 and CAB004262; it does not list either as Enhanced in the supplied antibody record (HPA: antibody validation). Supported evidence guides comparison but does not establish specificity in every specimen (general IHC practice). |
| Topology and processing | MAP2K7 has no transmembrane segment or signal peptide in the supplied record (UniProt O14733: topology and processing). The reference tissue pattern is cytoplasmic; a crisp cell-surface-only IHC pattern needs independent validation (HPA: tissue IHC; general IHC practice). |
| Isoforms and phosphorylation | Four isoforms and several modified residues are listed (UniProt O14733: isoforms and modified residues). The supplied record gives no antibody epitope or phospho-specificity, so staining cannot identify an isoform or activation state from this evidence alone (UniProt O14733; HPA: antibody record). |
| Antigen retrieval | Record and optimize retrieval against a positive tissue and a negative control as general paraffin-IHC practice (general IHC practice). The supplied UniProt and HPA evidence does not establish MAP2K7-specific retrieval requirements or fixation sensitivity (UniProt O14733; HPA: tissue IHC). |
| IF/ICC Q&A: should membrane fluorescence match tissue IHC? | HPA's ICC-IF summary lists cytosol and plasma membrane, both uncertain; that observation does not establish a membrane pattern in paraffin tissue IHC (HPA: subcellular ICC-IF; HPA: tissue IHC). Use the separate IF/ICC guide for that application. |
| Situation | Likely cause | Next action |
|---|---|---|
| Testis control is blank, including identifiable spermatogonia. | The run may have a primary-antibody, retrieval, or detection problem; absence of visible spermatogonia can also make the control uninformative (HPA: spermatogonia High; general IHC practice). | Confirm cell identity, then review the run's positive and negative controls and the documented reagent steps before interpreting study sections (general IHC practice). |
| Colour is diffuse across cells, stroma, and empty spaces. | Nonspecific binding, incomplete blocking, or excessive detection signal can obscure a cellular pattern (general IHC practice). HPA describes cytoplasmic staining in identifiable cells (HPA: tissue IHC). | Inspect a no-primary control, check blocking and washes, and adjust antibody or detection conditions using controlled comparisons (general IHC practice). |
| A no-primary control develops chromogenic signal. | Endogenous enzyme activity or nonspecific detection-reagent binding may contribute colour (general IHC practice). Such colour cannot establish MAP2K7 localization (general IHC practice). | Check the detection chemistry and its appropriate endogenous-activity block, then repeat the control before scoring the MAP2K7 slide (general IHC practice). |
| Strong staining appears in oral squamous epithelium or caudate glial cells. | Both populations are listed as Not detected, so cross-reactivity, background, or a specimen-specific difference needs evaluation (HPA: oral mucosa and caudate tissue IHC; general IHC practice). | Compare cell morphology and controls, then seek independent specificity evidence before treating the discrepant signal as MAP2K7 (general IHC practice). |
| Skeletal-muscle myocytes are blank despite UniProt's high-expression statement. | The sources differ: UniProt reports highest tissue expression in skeletal muscle, while HPA lists skeletal-muscle myocytes as Not detected by IHC (UniProt O14733: tissue specificity; HPA: tissue IHC). | Do not use myocyte staining alone to accept or reject the run; assess an HPA-listed positive cell population and the run controls (HPA: testis spermatogonia High; general IHC practice). |
| Signal is exclusively nuclear or sharply restricted to cell borders. | UniProt permits nuclear localization, but HPA's tissue IHC profile is predominantly cytoplasmic; ICC-IF membrane localization is uncertain (UniProt O14733: subcellular location; HPA: tissue IHC and ICC-IF). | Review morphology, compartment resolution, and controls; validate an atypical pattern independently before reporting it as the expected tissue IHC result (general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Supported — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Testis | Spermatogonia cells | High | Protein (IHC) | HPA → |
| Appendix | Lymphoid tissue | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Myoepithelial cells | Medium | Protein (IHC) | HPA → |
| Bronchus | Respiratory epithelial cells | Medium | Protein (IHC) | HPA → |
Troubleshoot MAP2K7 staining by anchoring the chromogenic IHC workflow to the PB9764 tissue image and checking compartment, cell type, and controls.
The catalog includes IHC images from human paraffin-embedded testicular cancer tissue and brain, plus IF data from PC-3 cells (PB9764 and A02713S271-1 image captions).
PB9764 has IHC data from a human paraffin-embedded testicular cancer section and IF data from PC-3 cells (PB9764 image captions). A02713S271-1 has phospho-Ser271 IHC data from paraffin-embedded human brain, including a phospho-peptide blocking image (A02713S271-1 IHC image caption).
Which to pick: Choose PB9764 for tissue IHC when a documented paraffin-section workflow is useful; its caption reports heat retrieval in EDTA at pH 8.0, while the fixative is unreported (PB9764 IHC image caption). PB9764 also has documented IF staining in PC-3 cells, whereas A02713S271-1 is the choice for phospho-Ser271 IHC in human brain sections (PB9764 IF image caption; A02713S271-1 IHC image caption). PB9764 lists the broadest species reactivity—human, monkey, mouse and rat—but its supplied IHC image documents human tissue only (PB9764 catalog reactivity; PB9764 IHC image caption).