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- Table of Contents
MCM7 is a nuclear DNA replication licensing factor (UniProt), and tissue IHC shows nuclear staining in highly proliferative cells (HPA tissue IHC). Use this paraffin-section guide to plan controls and score nuclear staining, with bone marrow hematopoietic cells as a high-staining reference (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Nuclear staining in highly proliferative cells (HPA tissue IHC) | |
| Staining pattern | Proliferative cells show nuclear staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet PB9261) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image PB9261) | |
| Caveat | Adipocytes may be unstained despite strong marrow staining (HPA tissue IHC) | |
| Regulation | Higher in highly proliferative cells (HPA tissue IHC) | |
| Isoform / epitope | Three isoforms; epitope coverage needs validation (UniProt) |
The catalog antibody’s IHC-P protocol uses EDTA pH 8.0 retrieval (datasheet: PB9261). The published IHC protocols below provide tissue-specific methods (PMC3964599; PMC3125391; PMC4156209).
| Sample | Paraffin-embedded Mouse Testis tissue; fixative not specified (datasheet PB9261) |
| Fixation | Image fixative and duration unreported (datasheet PB9261); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet PB9261); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet PB9261) |
| Primary antibody | Rabbit anti-MCM7, 0.5-1μg/ml (datasheet PB9261) |
| Primary incubation | Overnight at 4 °C (datasheet PB9261) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet PB9261) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MCM7-positive staining in endocrine cells of appendix (HPA tissue IHC: High). HPA tissue profile: Nuclear expression in highly proliferative cells. No signal in the no-primary control. |
MCM7 should stain nuclei, particularly in highly proliferative cells (HPA: nuclear expression in highly proliferative cells). Nuclear and chromosome localisation fits its role in DNA replication (UniProt P33993: localisation and function). HPA rates its tissue IHC pattern Enhanced, reflecting high consistency between staining and RNA expression (HPA: tissue IHC reliability). MCM7 has no transmembrane segment (UniProt P33993: topology).
| Strong, discrete nuclear staining in bone marrow hematopoietic cells or lymph node germinal center cells (HPA: High in both). | This fits the reported IHC pattern; score the relevant cells and their nuclei, rather than treating every nucleus in the section as an expected positive (HPA: nuclear expression in highly proliferative cells; general IHC practice). |
| Predominantly cytoplasmic or membrane staining, with little nuclear signal, in an IHC section. | Question the result because the expected tissue IHC pattern is nuclear (HPA: tissue IHC profile). UniProt places MCM7 in the nucleus and on chromosomes and reports no transmembrane segment (UniProt P33993: localisation and topology). |
| Strong staining in adipocytes or heart muscle cardiomyocytes (HPA: Not detected in those cells). | Investigate antibody cross-reactivity or endogenous detection activity before calling those cells MCM7 positive (general IHC practice). The HPA finding is cell specific; it does not mean every cell in either tissue must be negative (HPA: tissue IHC). |
| Diffuse colour over nuclei, cytoplasm and empty areas, obscuring cell boundaries. | Treat this as background until a no-primary control and a known-positive section clarify whether detection chemistry or nonspecific binding contributes (general IHC practice). Diffuse staining alone does not reproduce HPA's nuclear pattern (HPA: tissue IHC profile). |
| No nuclear staining in bone marrow hematopoietic cells despite intact tissue (HPA: High). | First check the staining run with a known-positive control and confirm that the expected cells are present (general IHC practice). A blank result may reflect assay failure; it does not by itself revise the HPA observation (HPA: tissue IHC). |
| Cell population chosen for evaluation | HPA reports High staining in bronchial basal cells, esophageal squamous epithelial cells and lymph node germinal center cells, but Not detected in adipocytes and cardiomyocytes. Compare the named cell populations, not whole-tissue averages (HPA: tissue IHC; general IHC practice). |
| Cell-cycle context | MCM7 participates in replication initiation and elongation, and its chromatin association changes as replication progresses (UniProt P33993: function and localisation). Interpret variable nuclear staining alongside the HPA pattern in highly proliferative cells; nuclear intensity alone does not assign a precise cell-cycle phase (HPA: tissue IHC profile; general IHC practice). |
| Antibody validation | HPA lists 3 antibodies with Enhanced IHC validation: HPA003898, CAB002163 and CAB016312 (HPA: antibody validation). This supports the reported pattern but does not establish that an unlisted catalog antibody has identical specificity (general IHC practice). |
| IF/ICC Q&A: must every signal be nuclear? | No. HPA approves nucleoplasm as the main ICC-IF location and also reports cytosol and basal body (HPA: ICC-IF localisation). Those additional ICC-IF observations do not make predominantly cytoplasmic staining the expected paraffin IHC result (HPA: tissue IHC profile). |
| Epitope and protein forms | UniProt lists 3 isoforms and several modified residues, but the supplied record does not map an antibody epitope to them (UniProt P33993: isoforms and modified residues; HPA: antibody list). Do not infer isoform selectivity, retrieval requirements or modification-dependent staining from these entries. |
| Processing and topology | UniProt reports no signal peptide, no propeptide and no transmembrane segment (UniProt P33993: processing and topology). A membrane-dominant IHC pattern therefore needs independent verification; these annotations alone do not predict fixation sensitivity or a particular antigen-retrieval condition. |
| Situation | Likely cause | Next action |
|---|---|---|
| Known-positive bone marrow section lacks nuclear signal (HPA: High in hematopoietic cells). | The run may have failed, or the examined field may lack the named positive cells (general IHC practice). | Confirm cell identity and inspect the run control, then check the antibody and detection steps against their instructions (general IHC practice). |
| Strong colour persists across cells and empty areas. | Nonspecific binding or detection background may obscure a true nuclear pattern (general IHC practice; HPA: tissue IHC profile). | Compare a no-primary control; review blocking, washes and detection exposure using general IHC practice. Do not score diffuse colour as nuclear positivity. |
| Signal is mainly at membranes or in cytoplasm on paraffin IHC. | The compartment disagrees with HPA tissue IHC and UniProt localisation (HPA: nuclear profile; UniProt P33993: nucleus and chromosome). | Check morphology and a known-positive nuclear control; investigate nonspecific staining before interpreting the signal as MCM7 (general IHC practice). |
| Adipocytes or cardiomyocytes stain strongly (HPA: Not detected in those cells). | Cross-reactivity or endogenous detection activity is possible; the HPA comparison applies to the named cell types (general IHC practice; HPA: tissue IHC). | Review cell identity and no-primary controls, then compare a listed positive cell population in the same run (HPA: tissue IHC; general IHC practice). |
| Nuclear signal is weak in a section expected to contain positive cells. | The relevant cell population may be sparse, or assay conditions may reduce visibility; target-specific fixation sensitivity is unreported here (HPA: cell-specific levels; general IHC practice). | Locate the named cells, check run controls and review the antibody's IHC-P instructions before adjusting routine assay conditions (general IHC practice). |
| IF/ICC shows a small extranuclear signal alongside nucleoplasmic staining. | HPA also approves cytosol and basal body localisation in ICC-IF (HPA: ICC-IF localisation). | Interpret it with the ICC-IF evidence and suitable imaging controls; use the separate IF/ICC guide for assay setup (HPA: ICC-IF localisation; general IF practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — High consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Endocrine cells | High | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | High | Protein (IHC) | HPA → |
| Bronchus | Basal cells | High | Protein (IHC) | HPA → |
| Colon | Endocrine cells | High | Protein (IHC) | HPA → |
| Duodenum | Endocrine cells | High | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Endothelial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
Troubleshoot MCM7 staining by checking retrieval, nuclear localisation, cell type and detection controls before comparing chromogenic IHC scores.
Anti-MCM7 antibodies have IHC images from paraffin sections of human, mouse, and rat tissues, plus IF images from human cells and colon sections (catalog image captions).
PB9261 has IHC images from mouse testis, rat intestine, and human lung cancer; M01649-3 has IHC images from human laryngeal squamous cell carcinoma, colon adenocarcinoma, and chronic tonsillitis (catalog IHC captions). PA1792 has IHC images from human bladder cancer, ovarian serous adenocarcinoma, and rectal adenocarcinoma (catalog IHC captions).
Which to pick: For human tissue IHC, PA1792 has a paraffin-section image using EDTA retrieval at pH 8.0 and 2 μg/ml primary antibody (PA1792 IHC caption). For human IF/ICC, the mouse monoclonal M01649-3 has an IF image in PC-3 cells and lists both applications (M01649-3 catalog and IF caption). For IHC across human, mouse, and rat samples, PB9261 lists all three species and has paraffin-section images from each; the captions do not report the fixative (PB9261 catalog and IHC captions).