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- Table of Contents
Plan MICAL2 paraffin-section IHC using adrenal or rectal glandular cells as strong positive references (HPA tissue IHC). This guide pairs the catalog antibody’s IHC evidence (datasheet A08683-1) with cytoplasmic tissue-staining expectations and the reported low consistency between staining and RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic tissue staining; nuclear location annotated (HPA tissue IHC; UniProt) | |
| Staining pattern | Glandular and other cells show cytoplasmic staining (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A08683-1) | |
| Positive control | Adrenal gland+4 more · see all | |
| Negative control | Caudate+3 more · see all |
| Fixation | Keep fixation consistent across sections (standard IHC practice; not target-specific) | |
| Caveat | Staining shows low consistency with RNA expression (HPA tissue IHC) | |
| Regulation | Abundance regulation is not annotated (UniProt) | |
| Isoform / epitope | 7 isoforms; antibody epitope coverage is unspecified (UniProt; datasheet A08683-1) |
Compare the catalog antibody’s IHC protocol (datasheet A08683-1) with four published MICAL2 IHC methods (PMC13182836; PMC10850094; PMC6276083; PMC4811499).
| Sample | Paraffin-embedded human pancreas cancer tissue; fixative not specified (datasheet A08683-1) |
| Fixation | Image fixative and duration unreported (datasheet A08683-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A08683-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A08683-1) |
| Primary antibody | Rabbit anti-MICAL2, 1:50 recommended; image 1:100 (datasheet A08683-1) |
| Primary incubation | Overnight at 4 °C (datasheet A08683-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A08683-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MICAL2-positive staining in glandular cells of adrenal gland (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic expression in most tissues. No signal in the no-primary control. |
MICAL2 is a non-transmembrane protein annotated in the cytoplasm and nucleus (UniProt O94851: topology and subcellular location). In paraffin-section IHC, expect predominantly cytoplasmic staining in glandular cells and other cell populations documented by HPA (HPA: tissue IHC). HPA rates the tissue staining “Approved” but reports low consistency with RNA expression and pending external verification (HPA: tissue IHC reliability).
| Cytoplasmic staining in adrenal or rectal glandular cells. | This matches HPA’s reported High staining in those cells and its predominantly cytoplasmic tissue profile (HPA: tissue IHC). Score the stained cell population and compartment together; intensity alone cannot establish specificity because HPA reports low consistency with RNA expression (HPA: tissue IHC reliability). |
| Predominantly nuclear staining with little cytoplasmic staining. | A nuclear signal is biologically plausible because UniProt also annotates MICAL2 in the nucleus (UniProt O94851: subcellular location). Nuclear-only tissue staining, however, differs from HPA’s predominantly cytoplasmic IHC profile; check localization and controls before interpreting it as MICAL2 (HPA: tissue IHC; general IHC practice). |
| Strong staining in cardiomyocytes or oral squamous epithelial cells. | HPA reports MICAL2 as Not detected in these cell populations (HPA: heart muscle and oral mucosa tissue IHC). Unexpected signal warrants checks for antibody cross-reactivity and endogenous chromogen-generating activity; those are possible explanations, not findings established for MICAL2 (general IHC practice). |
| Uniform color over cells, stroma and blank areas. | A broad deposit that does not follow cell boundaries or the expected cytoplasmic distribution is difficult to assign to MICAL2 (HPA: tissue IHC; general IHC practice). Compare it with a negative detection control and inspect washing, blocking and detection conditions (general IHC practice). |
| No detectable staining in adrenal or rectal glandular cells. | Absence conflicts with HPA’s High staining calls for those cells (HPA: adrenal gland and rectum tissue IHC). Check that the relevant glandular cells are present, then review the antibody’s IHC validation, staining run and detection controls before calling the sample negative (HPA: antibodies; general IHC practice). |
| Cell population and tissue | HPA reports High staining in adrenal and rectal glandular cells, Medium staining in several other listed populations, and Not detected in selected cells including cardiomyocytes (HPA: tissue IHC). Interpret the named cell population rather than assigning one expected intensity to an entire tissue (general IHC practice). |
| Compartment | UniProt annotates nucleus and cytoplasm, while HPA describes predominantly cytoplasmic tissue staining (UniProt O94851: subcellular location; HPA: tissue IHC). Thus, nuclear signal can be plausible, but a nuclear-only IHC pattern needs separate evaluation against the reported tissue pattern (general IHC practice). |
| Evidence strength and antibody choice | HPA labels the tissue IHC profile “Approved” while noting low agreement with RNA expression and pending external verification (HPA: tissue IHC reliability). The three listed antibodies, HPA030437, HPA039895 and HPA040438, have “Approved” IHC status; this does not remove the tissue-profile caveat (HPA: antibodies; HPA: tissue IHC reliability). |
| Isoforms and antigen processing | UniProt lists 7 MICAL2 isoforms, no signal peptide or propeptide, and one annotated chain spanning residues 1–1957 (UniProt O94851: isoforms and processing). The supplied record gives no antibody epitope, so it cannot establish which isoforms any listed antibody detects or predict an epitope-specific IHC pattern (UniProt O94851; HPA: antibodies). |
| IF/ICC: should it match tissue IHC? | HPA ICC-IF places MICAL2 mainly in cytosol, with supported nucleoplasmic and uncertain plasma-membrane localization; the main cytosol assignment is also uncertain (HPA: subcellular ICC-IF). Treat those localization details as IF context, not as a paraffin-section IHC protocol or a requirement for membrane staining in tissue (HPA: subcellular ICC-IF; HPA: tissue IHC). |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive-control glandular cells show no signal. | The run may have failed, or the expected cells may be absent from the section; HPA reports High staining in adrenal and rectal glandular cells (HPA: tissue IHC; general IHC practice). | Confirm the cells on the counterstained section, then review the IHC-validated antibody, detection reagents and run controls (HPA: antibodies; general IHC practice). |
| Signal is mainly nuclear in tissue. | UniProt permits nuclear localization, but HPA describes tissue staining as predominantly cytoplasmic (UniProt O94851: subcellular location; HPA: tissue IHC). | Score nuclear and cytoplasmic staining separately and compare matched controls before accepting a nuclear-only result (general IHC practice). |
| Cardiomyocytes or oral squamous cells stain strongly. | These populations are Not detected in HPA tissue IHC; cross-reactivity or endogenous detection activity is possible (HPA: tissue IHC; general IHC practice). | Compare an appropriate negative detection control and an HPA-reported positive cell population; investigate persistent unexpected staining (HPA: tissue IHC; general IHC practice). |
| Diffuse deposit obscures cell boundaries. | Background from blocking, washing or detection conditions can prevent cellular interpretation (general IHC practice). | Inspect the negative control, washing and blocking steps; score MICAL2 only where staining can be assigned to cells and a compartment (general IHC practice). |
| A negative population is used to reject a positive result elsewhere. | HPA reports different levels by cell population, from High in some glandular cells to Not detected in others (HPA: tissue IHC). | Identify and score each cell population separately, with its own HPA reference where available (HPA: tissue IHC; general IHC practice). |
| An IF membrane signal is treated as the expected IHC pattern. | HPA calls plasma-membrane ICC-IF localization uncertain, while its tissue IHC profile is cytoplasmic (HPA: subcellular ICC-IF; HPA: tissue IHC). | Interpret the paraffin-section result against the tissue IHC pattern; use IF/ICC localization only as context and keep the HPA reliability caveat visible (HPA: tissue IHC reliability; general IHC practice). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data. Pending external verification.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adrenal gland | Glandular cells | High | Protein (IHC) | HPA → |
| Rectum | Glandular cells | High | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Medium | Protein (IHC) | HPA → |
| Breast | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Heart muscle | Cardiomyocytes | Not detected | Protein (IHC) | HPA → |
| Oral mucosa | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
| Spleen | Cells in red pulp | Not detected | Protein (IHC) | HPA → |
Troubleshoot MICAL2 staining in paraffin sections by checking retrieval, compartment, cell identity, and controls before interpreting chromogenic signal.
A08683-1 has real IHC images from paraffin-embedded human cancer and mouse intestine (catalog IHC captions). IF/ICC and rat reactivity are listed, but no IF image is supplied (catalog applications/reactivity/images).
A08683-1 is the sole card; its IHC captions show human pancreas cancer, human prostate cancer and mouse small intestine in paraffin sections (A08683-1 IHC captions). IF/ICC is listed for this rabbit polyclonal antibody, with human, mouse and rat reactivity, but no IF image is supplied (catalog applications/host/clonality/reactivity/IF images).
Which to pick: Choose A08683-1 for tissue IHC: its own captions document EDTA retrieval at pH 8.0, goat-serum blocking, 1:100 overnight incubation and peroxidase/DAB detection in paraffin sections; the fixative is unreported (A08683-1 IHC captions). For IF/ICC, A08683-1 is listed at 1:50, without an IF figure (catalog applications/IF dilution/IF images). For cross-species work, A08683-1 lists human, mouse and rat reactivity, while its IHC images document human and mouse samples only (catalog reactivity/A08683-1 IHC captions).