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- Table of Contents
Plan MICALL2 IHC in paraffin sections using glandular tissue staining as a reference (HPA tissue IHC). This guide covers fixation consistency, expected cytoplasmic and membranous signal, and interpretation across tissues (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic and membranous staining (HPA tissue IHC) | |
| Staining pattern | Glandular cells: cytoplasmic and membranous signal (HPA tissue IHC) | |
| Antigen retrieval | EDTA pH 8.0 HIER, heat-mediated (datasheet A12852-1) | |
| Positive control | Colon+4 more · see all | |
| Negative control | Bone marrow+4 more · see all |
| Fixation | Matched tissue-IHC evidence does not establish the fixation claim. Validate the specimen-specific method before use. (selected-SKU IHC image A12852-1) | |
| Caveat | Prostate glandular cells show no staining (HPA tissue IHC) | |
| Regulation | Low tissue specificity by RNA (HPA tissue RNA) | |
| Isoform / epitope | 5 isoforms; check epitope coverage across variants (UniProt) |
The catalog antibody protocol uses EDTA pH 8.0 retrieval (datasheet: A12852-1). The published IHC protocols below cover ovarian, kidney, and colorectal cancer tissue (PMC10778810; PMC8899381; PMC9615392).
| Sample | Paraffin-embedded human colorectal adenocarcinoma tissue; fixative not specified (datasheet A12852-1) |
| Fixation | Image fixative and duration unreported (datasheet A12852-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: EDTA pH 8.0 (datasheet A12852-1); 20 min, 95–100 °C (standard) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A12852-1) |
| Primary antibody | Rabbit anti-MICALL2, 2-5 μg/ml (datasheet A12852-1) |
| Primary incubation | Overnight at 4 °C (datasheet A12852-1) |
| Detection | HRP-conjugated secondary, DAB chromogen (datasheet A12852-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MICALL2-positive staining in glandular cells of colon (HPA tissue IHC: High). HPA tissue profile: Cytoplasmic and membranous expression in several tissues. No signal in the no-primary control. |
MICALL2 should appear chiefly in cytoplasm and along cell borders in paraffin-section IHC (HPA: cytoplasmic and membranous expression; UniProt Q8IY33: cell membrane, junctions and cytoskeleton). Colon, duodenum and small-intestine glandular cells are strong reference sites (HPA: High). HPA rates tissue IHC reliability Enhanced, while reporting medium consistency between antibody staining and RNA expression (HPA: reliability description). MICALL2 has no transmembrane segment (UniProt Q8IY33 topology).
| Cytoplasmic stain with cell-border accentuation in intestinal glands. | This fits the reported compartment pattern and High staining in colon, duodenum and small-intestine glandular cells (HPA: tissue IHC). Compare cells within the same section before judging intensity: a visible border component is plausible, but every positive cell need not show an equally sharp junctional line (UniProt Q8IY33: junction and cytoskeleton locations). |
| Predominantly nuclear stain, with little cytoplasmic or border signal. | Treat a nucleus-only pattern as suspect because the listed locations are membrane, junction, endosome, projection and cytoskeleton (UniProt Q8IY33 subcellular location). Check counterstain overlap and antibody-omission controls before assigning MICALL2 positivity; an unexpected compartment alone does not identify the source of the signal (general IHC interpretation). |
| Strong staining in a cell population listed as undetected. | Hematopoietic cells in bone marrow and prostate glandular cells are reported Not detected (HPA: tissue IHC). Persistent staining there warrants review for cross-reactivity or endogenous chromogen activity (general IHC practice). HPA categories describe observed staining, so they should guide comparison rather than serve as absolute proof that every specimen is negative. |
| Uniform color across cells, stroma and spaces between cells. | A widespread haze does not match the reported cytoplasmic and membranous cellular pattern (HPA: tissue IHC). Review antibody-omission and detection-only controls for nonspecific background or endogenous enzyme activity; assess cellular staining only after background is controlled (general chromogenic IHC practice). |
| No detectable stain in colon or duodenal glandular cells. | Both are High reference populations (HPA: tissue IHC), making an entirely blank run a reason to check section quality, reagent performance and detection controls (general IHC practice). A blank result does not by itself establish biological absence; compare another documented positive section under the same conditions. |
| Cellular location and topology | MICALL2 is listed at cell membrane, tight junction, recycling endosome, projection and cytoskeleton, with no transmembrane segment (UniProt Q8IY33). Cytoplasmic signal can therefore coexist with border staining; the record does not require a continuous membrane outline in every cell. |
| Choice of comparison tissue | Colon, duodenum and small-intestine glandular cells are High; skin keratinocytes are Medium, while prostate glandular and bone-marrow hematopoietic cells are Not detected (HPA: tissue IHC). Score the specified cell population, since a whole-section impression can obscure the relevant comparison. |
| Strength of the IHC evidence | The tissue profile is cytoplasmic and membranous, with Enhanced reliability but medium staining-to-RNA consistency (HPA: tissue IHC). HPA025695 has Enhanced IHC validation (HPA: antibody record). These summaries support a reference pattern; they do not validate every antibody or specimen. |
| Isoforms and antibody recognition | UniProt lists 5 MICALL2 isoforms and a full-length chain spanning residues 1–904 (UniProt Q8IY33). The supplied records give no epitope for the antibody being used, so isoform coverage cannot be predicted; consult its documented immunogen before interpreting a discordant pattern. |
| Retrieval and fixation evidence | The supplied records report no MICALL2-specific retrieval condition or fixation sensitivity (UniProt Q8IY33; HPA: tissue IHC). Use the antibody's documented IHC-P conditions where available; any retrieval adjustment is a general method check, not an established MICALL2-specific effect. |
| IF/ICC question: what pattern is established? | No main ICC-IF location or cell-line image is provided (HPA: subcellular record). UniProt lists membrane, junction, endosome and cytoskeleton locations (UniProt Q8IY33), but those annotations do not establish an observed IF pattern. Evaluate IF/ICC on its own guide page. |
| Situation | Likely cause | Next action |
|---|---|---|
| Positive control tissue is blank. | Colon and duodenal glandular cells are reported High (HPA: tissue IHC); a blank control suggests a run or specimen problem (general IHC practice). | Check section integrity, primary-antibody application, documented IHC-P conditions and detection reagents; repeat with a documented positive section (general IHC practice). |
| Only faint glandular staining appears in an expected strong site. | The result falls below the High reference staining in colon, duodenum or small intestine (HPA: tissue IHC). The supplied sources cannot assign that difference to fixation or retrieval. | Compare matched control sections and the antibody's documented IHC-P conditions before changing one general workflow variable at a time (general IHC practice). |
| Nuclear staining dominates. | A predominantly nuclear pattern conflicts with the listed MICALL2 locations (UniProt Q8IY33 subcellular location); its cause remains undetermined. | Inspect the hematoxylin counterstain and compare primary-omission and positive-tissue controls before calling nuclei positive (general chromogenic IHC practice). |
| Prostate glands or bone-marrow hematopoietic cells stain strongly. | Those cell populations are Not detected in the HPA tissue record (HPA: tissue IHC); cross-reactivity or endogenous detection activity is possible (general IHC practice). | Verify the cell identity, review primary-omission and detection-only controls, and compare a documented positive tissue in the same run (general IHC practice). |
| Color is diffuse across tissue and empty spaces. | Noncellular haze conflicts with the reported cytoplasmic and membranous pattern (HPA: tissue IHC) and can reflect general staining background (general IHC practice). | Review washes, blocking and detection-only controls, then reassess whether signal follows cells and borders (general IHC practice). |
| Intestinal glands stain, but borders are not sharply outlined. | HPA reports both cytoplasmic and membranous staining, without requiring a continuous junctional line (HPA: tissue IHC). UniProt lists several intracellular locations (UniProt Q8IY33). | Score the cytoplasmic component and any reproducible border accentuation against controls; avoid rejecting an otherwise plausible positive solely for an indistinct border (general IHC interpretation). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Enhanced — Medium consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Colon | Glandular cells | High | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | High | Protein (IHC) | HPA → |
| Small intestine | Glandular cells | High | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Medium | Protein (IHC) | HPA → |
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Caudate | Glial cells | Not detected | Protein (IHC) | HPA → |
| Cerebellum | Cells in granular layer | Not detected | Protein (IHC) | HPA → |
| Cerebral cortex | Glial cells | Not detected | Protein (IHC) | HPA → |
| Hippocampus | Glial cells | Not detected | Protein (IHC) | HPA → |
Use the catalog antibody’s tissue section conditions as the starting point, then check staining against MICALL2’s reported localisation and tissue pattern.
A12852-1 has real IHC data from a human paraffin-embedded colorectal adenocarcinoma section (A12852-1 image caption). No IF image is provided (catalog image inventory).
A12852-1 is listed for human IHC (catalog applications and reactivity). Its own image documents staining in a paraffin-embedded human colorectal adenocarcinoma section (A12852-1 image caption).
Which to pick: Choose A12852-1 for human paraffin-section IHC: its own caption reports EDTA pH 8.0 retrieval and 2 μg/ml primary antibody; the fixative is unreported (A12852-1 image caption). No listed SKU has IF/ICC validation or reactivity beyond human (catalog applications, reactivity and image inventory). A12852-1 is rabbit-hosted, and its clonality is unreported (catalog host and clone fields).