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- Table of Contents
Plan MID1 paraffin-section IHC around cytoplasmic staining reported in several tissues (HPA tissue IHC). Compare staining with appropriate tissue controls, since antibody staining shows low consistency with RNA expression (HPA tissue IHC).
Expected localisation, validated protocols, controls and antibodies — the at-a-glance facts below, then the full design guide.
| Expected localisation | Cytoplasmic staining in several tissues (HPA tissue IHC) | |
| Staining pattern | Cytoplasmic staining in glandular, glial and tubular cells (HPA tissue IHC) | |
| Antigen retrieval | Citrate pH 6 HIER, heat-mediated (datasheet A01774-1) | |
| Positive control | Appendix+4 more · see all | |
| Negative control | Adipose tissue+4 more · see all |
| Fixation | Keep fixation conditions consistent across sections. (standard IHC practice; not target-specific) | |
| Caveat | Low agreement between staining and RNA expression (HPA tissue IHC) | |
| Regulation | Adult heart, placenta, brain most abundant (UniProt) | |
| Isoform / epitope | 2 isoforms; epitope coverage needs checking (UniProt) |
The catalog antibody’s IHC-P protocol (datasheet: A01774-1) is followed by three published MID1 IHC protocols (PMC5653760; PMC4074869; PMC11978649).
| Sample | Paraffin-embedded human placenta tissues; fixative not specified (datasheet A01774-1) |
| Fixation | Image fixative and duration unreported (datasheet A01774-1); verify before use. |
| Sectioning | 4–5 µm sections on charged slides (standard) |
| Deparaffinisation | Xylene, graded ethanol series to water (standard) |
| Antigen retrieval | Heat retrieval: Citrate pH 6, 20 min (datasheet A01774-1) |
| Peroxidase block | 3% H2O2, 10 min, room temperature (standard) |
| Blocking | 10% goat serum (datasheet A01774-1) |
| Primary antibody | Rabbit anti-MID1, 0.5-1μg/ml (datasheet A01774-1) |
| Primary incubation | Overnight at 4 °C (datasheet A01774-1) |
| Detection | Streptavidin-biotin complex (SABC), DAB chromogen (datasheet A01774-1) |
| Counterstain | Hematoxylin, blue, dehydrate and mount (standard) |
| Expected result | MID1-positive staining in glandular cells of appendix (HPA tissue IHC: Medium). HPA tissue profile: Cytoplasmic expression in several tissues. No signal in the no-primary control. |
MID1 is a cytoplasmic, microtubule-associated protein with no transmembrane segment (UniProt O15344). In paraffin-section IHC, expect cytoplasmic staining in selected glandular cells, glial cells and kidney tubule cells (HPA tissue IHC). HPA rates its tissue IHC evidence Approved but reports low consistency between antibody staining and RNA expression, so interpret tissue patterns with that limitation (HPA tissue IHC).
| Medium cytoplasmic staining in colon or appendix glandular cells, or kidney tubule cells (HPA tissue IHC). | This matches reported positive cell populations and MID1's cytoplasmic location (HPA tissue IHC; UniProt O15344). Score the named cells and compartment rather than treating the whole section as uniformly positive; HPA reports low consistency between staining and RNA expression (HPA tissue IHC). |
| Staining is confined to nuclei or outlines cell membranes, with little cytoplasmic signal. | A predominantly nuclear or membrane pattern conflicts with UniProt's cytoplasmic, microtubule-associated annotation and lack of a transmembrane segment (UniProt O15344). Treat the pattern as suspect; compare it with a reported positive cell population and appropriate detection controls (HPA tissue IHC; standard IHC practice). |
| Adipocytes or bone-marrow hematopoietic cells stain strongly while expected positive cells do not (HPA tissue IHC). | HPA reports those cell populations as not detected (HPA tissue IHC). Check for cross-reactivity or endogenous detection activity before assigning the signal to MID1 (standard IHC practice). A negative HPA observation is a reference pattern, not proof that every specimen must be negative. |
| Brown signal spreads across stroma, blank areas or many cell types without a clear cytoplasmic pattern. | Diffuse background makes cell-specific interpretation unreliable (standard IHC practice). Assess a no-primary control, endogenous peroxidase blocking, antibody concentration and washing before scoring the section (standard chromogenic IHC practice). HPA's reported pattern is cytoplasmic expression in several tissues (HPA tissue IHC). |
| No cytoplasmic signal appears in colon glandular cells or kidney tubule cells (HPA tissue IHC). | These are reported medium-staining reference populations, so a blank result warrants a run-quality check (HPA tissue IHC). Confirm tissue morphology, reagent function, retrieval and detection using established controls (standard IHC practice); do not infer a MID1-specific fixation effect from the supplied evidence. |
| Cell and tissue selection | HPA reports medium staining in glandular cells of appendix, colon, duodenum and endometrium; glial cells of caudate, cerebral cortex and hippocampus; and kidney tubule cells (HPA tissue IHC). Its not-detected calls apply to the specified cell populations, such as adipocytes and lung alveolar cells, rather than every cell in those tissues (HPA tissue IHC). |
| Subcellular resolution | UniProt places MID1 on cytoplasmic microtubules, including interphase fibers, mitotic spindles and midbodies (UniProt O15344). HPA tissue IHC supports a cytoplasmic readout, but its tissue summary does not require those fine structures to be resolved in chromogenic sections (HPA tissue IHC). |
| Evidence strength and antibody choice | HPA marks tissue IHC Approved while noting low consistency with RNA expression; HPA003715 has IHC Approved status (HPA tissue IHC; HPA antibody validation). Use that status as validation context, not as a guarantee that every tissue or specimen reproduces the reported intensity (HPA tissue IHC). |
| Isoforms and epitope interpretation | UniProt lists 2 MID1 isoforms and a COS, fibronectin type-III and B30.2/SPRY region (UniProt O15344). The supplied record does not locate either antibody's epitope, so it cannot establish whether both isoforms are detected or predict an epitope-specific IHC pattern. |
| Antigen retrieval and fixation | Antigen retrieval is a standard paraffin-section IHC variable to check when a run fails (standard IHC practice). Neither UniProt nor HPA supplies a MID1-specific fixation or retrieval effect here; do not attribute weak staining, epitope masking or a tissue discrepancy to one without experimental evidence. |
| IF/ICC Q: should it reproduce the IHC pattern? | IF/ICC offers a separate localisation readout: HPA reports centriolar satellites as uncertain, Golgi localisation as uncertain and cytosol as supported (HPA subcellular ICC-IF). HPA002878 has ICC Supported status, whereas HPA003715 has IHC Approved status (HPA antibody validation); do not equate their validation or require a satellite pattern in paraffin IHC. |
| Situation | Likely cause | Next action |
|---|---|---|
| A reported positive reference population is blank. | The run may have failed at retrieval, antibody incubation or detection; HPA reports medium staining in colon glandular cells and kidney tubule cells (standard IHC practice; HPA tissue IHC). | Check a known working positive section and detection control, then review the documented retrieval and antibody conditions (standard IHC practice). The supplied sources give no MID1-specific fixation-sensitivity claim. |
| Only nuclei or cell borders stain. | That distribution does not match MID1's cytoplasmic annotation or lack of a transmembrane segment (UniProt O15344). | Compare the same run with a reported cytoplasmic positive cell population, verify morphology and review no-primary and antibody controls before calling it MID1 (HPA tissue IHC; standard IHC practice). |
| Many cells show uniform brown haze. | Diffuse deposition can obscure compartment and cell identity (standard chromogenic IHC practice). | Inspect the no-primary control; review endogenous peroxidase blocking, antibody concentration and washes, then score only interpretable cellular staining (standard IHC practice). |
| A HPA not-detected cell population stains strongly. | For example, HPA reports adipocytes and bone-marrow hematopoietic cells as not detected; unexpected signal could reflect cross-reactivity or endogenous activity (HPA tissue IHC; standard IHC practice). | Check the exact cell type against the HPA entry, assess no-primary and reagent controls, and compare with a reported positive population on a controlled run (HPA tissue IHC; standard IHC practice). |
| Staining is weaker than the HPA reference. | HPA reports medium signal in specified positive cells but also notes low consistency between antibody staining and RNA expression (HPA tissue IHC). The record cannot identify a specimen-specific cause. | Confirm the same cell population is being compared, check run controls and report the observed intensity; avoid claiming a MID1-specific fixation or retrieval mechanism without evidence (HPA tissue IHC; standard IHC practice). |
| An IF/ICC pattern differs from chromogenic tissue IHC. | HPA describes cytosol plus uncertain satellite and Golgi localisation in ICC-IF, while tissue IHC is summarized as cytoplasmic expression; the two antibody validation entries also differ (HPA subcellular ICC-IF; HPA tissue IHC; HPA antibody validation). | Interpret each assay against its own HPA validation and cellular resolution; use the separate IF/ICC guide for IF design, and do not turn its localisation findings into a required paraffin-section pattern (HPA subcellular ICC-IF; HPA tissue IHC). |
Comprehensive Human Protein Atlas IHC scoring per tissue (reliability: Approved — Low consistency between antibody staining and RNA expression data.). Rows are taken directly from the HPA tissue chart — click any row's HPA link to view the source.
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Appendix | Glandular cells | Medium | Protein (IHC) | HPA → |
| Caudate | Glial cells | Medium | Protein (IHC) | HPA → |
| Cerebral cortex | Glial cells | Medium | Protein (IHC) | HPA → |
| Colon | Glandular cells | Medium | Protein (IHC) | HPA → |
| Duodenum | Glandular cells | Medium | Protein (IHC) | HPA → |
| Tissue | Cell type | Level | Evidence | Source |
|---|---|---|---|---|
| Adipose tissue | Adipocytes | Not detected | Protein (IHC) | HPA → |
| Adrenal gland | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Bone marrow | Hematopoietic cells | Not detected | Protein (IHC) | HPA → |
| Cervix | Glandular cells | Not detected | Protein (IHC) | HPA → |
| Esophagus | Squamous epithelial cells | Not detected | Protein (IHC) | HPA → |
Troubleshoot MID1 staining in paraffin sections by checking retrieval, controls, cytoplasmic localisation and cell type before interpreting chromogenic signal.
The catalog antibody has IHC images from human placenta and mouse brain paraffin sections (A01774-1 IHC captions) and an IF image from U20S cells (A01774-1 IF caption).
A01774-1 has IHC images from human placenta and mouse brain paraffin sections (A01774-1 IHC captions). The same SKU has an IF image from U20S cells (A01774-1 IF caption) and lists human and mouse reactivity (catalog: A01774-1 reactivity).
Which to pick: Choose A01774-1 for paraffin-section IHC: its own captions document staining in human placenta and mouse brain after citrate-buffer retrieval (A01774-1 IHC captions); the fixative is unreported. For IF/ICC, the same rabbit antibody lists both applications (catalog: A01774-1 host and applications) and has an IF image from U20S cells (A01774-1 IF caption). It is also the catalog choice for human and mouse samples (catalog: A01774-1 reactivity); the IHC captions show staining in a paraffin section from each species (A01774-1 IHC captions).